Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS02875 and HMPREF1078_RS18205 are separated by 1 nucleotides HMPREF1078_RS18205 and HMPREF1078_RS19485 are separated by 174 nucleotides HMPREF1078_RS19485 and HMPREF1078_RS02885 are separated by 31 nucleotides HMPREF1078_RS02885 and HMPREF1078_RS02890 are separated by 79 nucleotides
HMPREF1078_RS02875: HMPREF1078_RS02875 - recombination protein NinG, at 690,983 to 691,423
_RS02875
HMPREF1078_RS18205: HMPREF1078_RS18205 - DUF4373 domain-containing protein, at 691,425 to 692,189
_RS18205
HMPREF1078_RS19485: HMPREF1078_RS19485 - hypothetical protein, at 692,364 to 692,513
_RS19485
HMPREF1078_RS02885: HMPREF1078_RS02885 - DUF1566 domain-containing protein, at 692,545 to 693,186
_RS02885
HMPREF1078_RS02890: HMPREF1078_RS02890 - PcfK-like family protein, at 693,266 to 693,676
_RS02890
Position (kb) 692
693 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 691.421 kb on + strand at 691.422 kb on - strand at 691.452 kb on - strand at 691.496 kb on - strand at 691.509 kb on - strand, within HMPREF1078_RS18205 at 691.522 kb on - strand, within HMPREF1078_RS18205 at 691.531 kb on - strand, within HMPREF1078_RS18205 at 691.536 kb on + strand, within HMPREF1078_RS18205 at 691.536 kb on + strand, within HMPREF1078_RS18205 at 691.537 kb on - strand, within HMPREF1078_RS18205 at 691.537 kb on - strand, within HMPREF1078_RS18205 at 691.538 kb on + strand, within HMPREF1078_RS18205 at 691.538 kb on + strand, within HMPREF1078_RS18205 at 691.538 kb on + strand, within HMPREF1078_RS18205 at 691.538 kb on + strand, within HMPREF1078_RS18205 at 691.538 kb on + strand, within HMPREF1078_RS18205 at 691.539 kb on - strand, within HMPREF1078_RS18205 at 691.539 kb on - strand, within HMPREF1078_RS18205 at 691.540 kb on + strand, within HMPREF1078_RS18205 at 691.541 kb on - strand, within HMPREF1078_RS18205 at 691.541 kb on - strand, within HMPREF1078_RS18205 at 691.541 kb on - strand, within HMPREF1078_RS18205 at 691.606 kb on + strand, within HMPREF1078_RS18205 at 691.606 kb on + strand, within HMPREF1078_RS18205 at 691.607 kb on - strand, within HMPREF1078_RS18205 at 691.657 kb on - strand, within HMPREF1078_RS18205 at 691.708 kb on + strand, within HMPREF1078_RS18205 at 691.709 kb on - strand, within HMPREF1078_RS18205 at 691.732 kb on + strand, within HMPREF1078_RS18205 at 691.733 kb on - strand, within HMPREF1078_RS18205 at 691.737 kb on + strand, within HMPREF1078_RS18205 at 691.737 kb on + strand, within HMPREF1078_RS18205 at 691.737 kb on + strand, within HMPREF1078_RS18205 at 691.738 kb on - strand, within HMPREF1078_RS18205 at 691.738 kb on - strand, within HMPREF1078_RS18205 at 691.800 kb on - strand, within HMPREF1078_RS18205 at 691.869 kb on + strand, within HMPREF1078_RS18205 at 691.869 kb on + strand, within HMPREF1078_RS18205 at 691.870 kb on - strand, within HMPREF1078_RS18205 at 691.871 kb on + strand, within HMPREF1078_RS18205 at 691.872 kb on - strand, within HMPREF1078_RS18205 at 691.872 kb on - strand, within HMPREF1078_RS18205 at 692.024 kb on - strand, within HMPREF1078_RS18205 at 692.151 kb on + strand at 692.278 kb on + strand at 692.295 kb on + strand at 692.321 kb on - strand at 692.334 kb on + strand at 692.338 kb on - strand at 692.393 kb on - strand, within HMPREF1078_RS19485 at 692.442 kb on + strand, within HMPREF1078_RS19485 at 692.511 kb on + strand at 692.514 kb on + strand at 692.514 kb on + strand at 692.515 kb on - strand at 692.515 kb on - strand at 692.515 kb on - strand at 692.520 kb on + strand at 692.521 kb on - strand at 692.523 kb on - strand at 692.530 kb on + strand at 692.616 kb on - strand, within HMPREF1078_RS02885 at 692.619 kb on + strand, within HMPREF1078_RS02885 at 692.620 kb on - strand, within HMPREF1078_RS02885 at 692.671 kb on + strand, within HMPREF1078_RS02885 at 692.733 kb on - strand, within HMPREF1078_RS02885 at 692.733 kb on - strand, within HMPREF1078_RS02885 at 692.737 kb on + strand, within HMPREF1078_RS02885 at 692.758 kb on + strand, within HMPREF1078_RS02885 at 692.759 kb on - strand, within HMPREF1078_RS02885 at 692.799 kb on - strand, within HMPREF1078_RS02885 at 692.849 kb on - strand, within HMPREF1078_RS02885 at 692.953 kb on + strand, within HMPREF1078_RS02885 at 692.954 kb on - strand, within HMPREF1078_RS02885 at 692.954 kb on - strand, within HMPREF1078_RS02885 at 692.955 kb on + strand, within HMPREF1078_RS02885 at 692.955 kb on + strand, within HMPREF1078_RS02885 at 692.955 kb on + strand, within HMPREF1078_RS02885 at 692.955 kb on + strand, within HMPREF1078_RS02885 at 692.955 kb on + strand, within HMPREF1078_RS02885 at 692.955 kb on + strand, within HMPREF1078_RS02885 at 692.956 kb on - strand, within HMPREF1078_RS02885 at 692.956 kb on - strand, within HMPREF1078_RS02885 at 692.956 kb on - strand, within HMPREF1078_RS02885 at 692.957 kb on + strand, within HMPREF1078_RS02885 at 692.957 kb on + strand, within HMPREF1078_RS02885 at 692.957 kb on + strand, within HMPREF1078_RS02885 at 692.958 kb on - strand, within HMPREF1078_RS02885 at 692.975 kb on + strand, within HMPREF1078_RS02885 at 692.995 kb on - strand, within HMPREF1078_RS02885 at 692.995 kb on - strand, within HMPREF1078_RS02885 at 692.995 kb on - strand, within HMPREF1078_RS02885 at 693.094 kb on + strand, within HMPREF1078_RS02885 at 693.094 kb on + strand, within HMPREF1078_RS02885 at 693.094 kb on + strand, within HMPREF1078_RS02885 at 693.095 kb on - strand, within HMPREF1078_RS02885 at 693.130 kb on + strand at 693.131 kb on - strand at 693.141 kb on + strand at 693.141 kb on + strand at 693.146 kb on - strand at 693.177 kb on + strand at 693.178 kb on - strand at 693.185 kb on - strand at 693.294 kb on + strand at 693.331 kb on + strand, within HMPREF1078_RS02890 at 693.331 kb on + strand, within HMPREF1078_RS02890 at 693.371 kb on - strand, within HMPREF1078_RS02890 at 693.371 kb on - strand, within HMPREF1078_RS02890 at 693.468 kb on - strand, within HMPREF1078_RS02890 at 693.468 kb on - strand, within HMPREF1078_RS02890 at 693.468 kb on - strand, within HMPREF1078_RS02890
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day4 remove 691,421 + -0.1 691,422 - +1.2 691,452 - +2.6 691,496 - -0.4 691,509 - HMPREF1078_RS18205 0.11 -1.4 691,522 - HMPREF1078_RS18205 0.13 +1.5 691,531 - HMPREF1078_RS18205 0.14 -0.4 691,536 + HMPREF1078_RS18205 0.15 -2.4 691,536 + HMPREF1078_RS18205 0.15 -3.2 691,537 - HMPREF1078_RS18205 0.15 +0.1 691,537 - HMPREF1078_RS18205 0.15 -0.1 691,538 + HMPREF1078_RS18205 0.15 -1.4 691,538 + HMPREF1078_RS18205 0.15 +0.6 691,538 + HMPREF1078_RS18205 0.15 +0.2 691,538 + HMPREF1078_RS18205 0.15 -1.4 691,538 + HMPREF1078_RS18205 0.15 -2.4 691,539 - HMPREF1078_RS18205 0.15 -1.1 691,539 - HMPREF1078_RS18205 0.15 -0.6 691,540 + HMPREF1078_RS18205 0.15 -0.8 691,541 - HMPREF1078_RS18205 0.15 -0.4 691,541 - HMPREF1078_RS18205 0.15 -1.1 691,541 - HMPREF1078_RS18205 0.15 +0.2 691,606 + HMPREF1078_RS18205 0.24 -1.8 691,606 + HMPREF1078_RS18205 0.24 +1.4 691,607 - HMPREF1078_RS18205 0.24 +0.1 691,657 - HMPREF1078_RS18205 0.30 +1.5 691,708 + HMPREF1078_RS18205 0.37 -0.1 691,709 - HMPREF1078_RS18205 0.37 -0.8 691,732 + HMPREF1078_RS18205 0.40 -2.8 691,733 - HMPREF1078_RS18205 0.40 +0.7 691,737 + HMPREF1078_RS18205 0.41 +0.1 691,737 + HMPREF1078_RS18205 0.41 -0.8 691,737 + HMPREF1078_RS18205 0.41 -1.1 691,738 - HMPREF1078_RS18205 0.41 +0.4 691,738 - HMPREF1078_RS18205 0.41 +1.0 691,800 - HMPREF1078_RS18205 0.49 +0.2 691,869 + HMPREF1078_RS18205 0.58 -2.2 691,869 + HMPREF1078_RS18205 0.58 -2.1 691,870 - HMPREF1078_RS18205 0.58 +0.8 691,871 + HMPREF1078_RS18205 0.58 -0.5 691,872 - HMPREF1078_RS18205 0.58 -0.4 691,872 - HMPREF1078_RS18205 0.58 +1.7 692,024 - HMPREF1078_RS18205 0.78 -2.7 692,151 + -0.8 692,278 + -2.4 692,295 + -1.9 692,321 - -2.1 692,334 + +1.4 692,338 - -1.1 692,393 - HMPREF1078_RS19485 0.19 -1.8 692,442 + HMPREF1078_RS19485 0.52 -1.4 692,511 + +0.2 692,514 + +0.8 692,514 + -1.5 692,515 - -1.1 692,515 - -0.8 692,515 - -1.6 692,520 + -0.7 692,521 - +0.4 692,523 - -1.4 692,530 + -2.2 692,616 - HMPREF1078_RS02885 0.11 +0.4 692,619 + HMPREF1078_RS02885 0.12 +1.4 692,620 - HMPREF1078_RS02885 0.12 +1.2 692,671 + HMPREF1078_RS02885 0.20 +1.0 692,733 - HMPREF1078_RS02885 0.29 +2.2 692,733 - HMPREF1078_RS02885 0.29 -0.3 692,737 + HMPREF1078_RS02885 0.30 -0.8 692,758 + HMPREF1078_RS02885 0.33 +0.5 692,759 - HMPREF1078_RS02885 0.33 -1.1 692,799 - HMPREF1078_RS02885 0.40 +0.8 692,849 - HMPREF1078_RS02885 0.47 +0.5 692,953 + HMPREF1078_RS02885 0.64 -1.9 692,954 - HMPREF1078_RS02885 0.64 +0.8 692,954 - HMPREF1078_RS02885 0.64 -2.9 692,955 + HMPREF1078_RS02885 0.64 +1.9 692,955 + HMPREF1078_RS02885 0.64 +1.2 692,955 + HMPREF1078_RS02885 0.64 -0.8 692,955 + HMPREF1078_RS02885 0.64 +0.9 692,955 + HMPREF1078_RS02885 0.64 -0.5 692,955 + HMPREF1078_RS02885 0.64 -1.2 692,956 - HMPREF1078_RS02885 0.64 -1.1 692,956 - HMPREF1078_RS02885 0.64 -1.6 692,956 - HMPREF1078_RS02885 0.64 -4.2 692,957 + HMPREF1078_RS02885 0.64 -1.4 692,957 + HMPREF1078_RS02885 0.64 -3.7 692,957 + HMPREF1078_RS02885 0.64 -1.8 692,958 - HMPREF1078_RS02885 0.64 +0.9 692,975 + HMPREF1078_RS02885 0.67 -0.1 692,995 - HMPREF1078_RS02885 0.70 -1.4 692,995 - HMPREF1078_RS02885 0.70 +0.8 692,995 - HMPREF1078_RS02885 0.70 +0.9 693,094 + HMPREF1078_RS02885 0.86 -0.4 693,094 + HMPREF1078_RS02885 0.86 -2.9 693,094 + HMPREF1078_RS02885 0.86 +0.6 693,095 - HMPREF1078_RS02885 0.86 +1.2 693,130 + -0.9 693,131 - +1.2 693,141 + -2.4 693,141 + +1.5 693,146 - -1.9 693,177 + -2.4 693,178 - +0.2 693,185 - +2.1 693,294 + +0.1 693,331 + HMPREF1078_RS02890 0.16 +1.8 693,331 + HMPREF1078_RS02890 0.16 +1.8 693,371 - HMPREF1078_RS02890 0.26 -0.4 693,371 - HMPREF1078_RS02890 0.26 -0.4 693,468 - HMPREF1078_RS02890 0.49 +0.7 693,468 - HMPREF1078_RS02890 0.49 +1.2 693,468 - HMPREF1078_RS02890 0.49 +1.2
Or see this region's nucleotide sequence