Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS17750

Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day4
115,294	+		HMPREF1078_RS17740	0.60	+1.0
115,294	+		HMPREF1078_RS17740	0.60	+1.5
115,328	-		HMPREF1078_RS17740	0.63	+2.0
115,329	+		HMPREF1078_RS17740	0.63	+0.3
115,330	-		HMPREF1078_RS17740	0.63	+0.1
115,330	-		HMPREF1078_RS17740	0.63	+1.7
115,349	+		HMPREF1078_RS17740	0.65	+1.6
115,448	-		HMPREF1078_RS17740	0.74	+0.3
115,448	-		HMPREF1078_RS17740	0.74	+1.3
115,495	+		HMPREF1078_RS17740	0.78	+1.8
115,495	+		HMPREF1078_RS17740	0.78	+0.4
115,506	-		HMPREF1078_RS17740	0.79	+0.1
115,540	-		HMPREF1078_RS17740	0.83	+1.3
115,597	+		HMPREF1078_RS17740	0.88	+0.3
115,598	-		HMPREF1078_RS17740	0.88	+0.2
115,654	+				-0.2
115,669	-				+0.3
115,669	-				+1.5
115,763	+				+0.3
115,764	-				+0.8
115,764	-				-0.4
115,768	+				-3.6
115,769	-				-0.9
115,769	-				-1.2
115,769	-				-2.0
115,769	-				-2.0
115,839	+		HMPREF1078_RS17745	0.30	-2.1
115,840	-		HMPREF1078_RS17745	0.30	-1.4
115,862	-		HMPREF1078_RS17745	0.37	-2.3
115,868	+		HMPREF1078_RS17745	0.39	-1.0
115,869	-		HMPREF1078_RS17745	0.39	-0.8
115,869	-		HMPREF1078_RS17745	0.39	-0.3
115,879	-		HMPREF1078_RS17745	0.42	-2.4
115,879	-		HMPREF1078_RS17745	0.42	+1.3
115,911	-		HMPREF1078_RS17745	0.52	+0.6
115,920	+		HMPREF1078_RS17745	0.54	-0.8
115,921	-		HMPREF1078_RS17745	0.55	-1.3
115,922	+		HMPREF1078_RS17745	0.55	-0.7
115,922	+		HMPREF1078_RS17745	0.55	-0.7
115,922	+		HMPREF1078_RS17745	0.55	-2.3
115,922	+		HMPREF1078_RS17745	0.55	+0.7
115,922	+		HMPREF1078_RS17745	0.55	-0.3
115,922	+		HMPREF1078_RS17745	0.55	-1.5
115,922	+		HMPREF1078_RS17745	0.55	-1.3
115,922	+		HMPREF1078_RS17745	0.55	-1.5
115,923	-		HMPREF1078_RS17745	0.55	+1.3
115,923	-		HMPREF1078_RS17745	0.55	-1.3
115,923	-		HMPREF1078_RS17745	0.55	-3.4
115,923	-		HMPREF1078_RS17745	0.55	-0.6
115,923	-		HMPREF1078_RS17745	0.55	-0.4
115,923	-		HMPREF1078_RS17745	0.55	-2.1
115,923	-		HMPREF1078_RS17745	0.55	+0.6
115,924	-		HMPREF1078_RS17745	0.56	+4.4
115,959	-		HMPREF1078_RS17745	0.66	-2.2
115,970	-		HMPREF1078_RS17745	0.70	+1.3
116,009	+		HMPREF1078_RS17745	0.82	+0.5
116,010	-		HMPREF1078_RS17745	0.82	-0.3
116,010	-		HMPREF1078_RS17745	0.82	-0.4
116,010	-		HMPREF1078_RS17745	0.82	+0.3
116,014	+		HMPREF1078_RS17745	0.83	-1.9
116,015	-		HMPREF1078_RS17745	0.83	-2.6
116,015	-		HMPREF1078_RS17745	0.83	+0.3
116,015	-		HMPREF1078_RS17745	0.83	-0.3
116,015	-		HMPREF1078_RS17745	0.83	-0.7
116,015	-		HMPREF1078_RS17745	0.83	-1.3
116,020	-		HMPREF1078_RS17745	0.85	-1.7
116,052	-				+1.1
116,082	+				-2.0
116,093	+				+1.3
116,094	-				-0.2
116,094	-				-1.7
116,094	-				-1.6
116,146	+				-0.8
116,156	-				-0.8
116,209	-				+1.9
116,255	+				-2.0
116,262	+				-0.3
116,271	+				-1.0
116,304	+				-1.3
116,396	+				-2.6
116,397	-				+1.3
116,397	-				-0.3
116,438	+				+0.3
116,463	-		HMPREF1078_RS17750	0.11	+0.5
116,478	+		HMPREF1078_RS17750	0.12	-2.7
116,496	+		HMPREF1078_RS17750	0.13	+0.6
116,496	+		HMPREF1078_RS17750	0.13	-2.3
116,497	-		HMPREF1078_RS17750	0.13	-1.0
116,497	-		HMPREF1078_RS17750	0.13	-0.7
116,497	-		HMPREF1078_RS17750	0.13	-0.7
116,497	-		HMPREF1078_RS17750	0.13	+0.3
116,526	+		HMPREF1078_RS17750	0.15	-0.3
116,526	+		HMPREF1078_RS17750	0.15	-2.6
116,556	+		HMPREF1078_RS17750	0.16	-2.5
116,558	+		HMPREF1078_RS17750	0.16	+1.3
116,561	-		HMPREF1078_RS17750	0.17	+1.0
116,576	+		HMPREF1078_RS17750	0.17	+0.3
116,576	+		HMPREF1078_RS17750	0.17	+0.3
116,578	+		HMPREF1078_RS17750	0.18	-0.3
116,579	-		HMPREF1078_RS17750	0.18	+0.3
116,579	-		HMPREF1078_RS17750	0.18	-2.6
116,583	-		HMPREF1078_RS17750	0.18	-2.0
116,713	-		HMPREF1078_RS17750	0.25	-1.7
116,804	+		HMPREF1078_RS17750	0.30	-1.7
116,812	+		HMPREF1078_RS17750	0.30	-1.5
116,812	+		HMPREF1078_RS17750	0.30	+1.3
116,812	+		HMPREF1078_RS17750	0.30	-1.5
116,814	+		HMPREF1078_RS17750	0.30	-2.9
116,814	+		HMPREF1078_RS17750	0.30	-0.3
116,814	+		HMPREF1078_RS17750	0.30	-3.0
116,814	+		HMPREF1078_RS17750	0.30	-2.9
116,814	+		HMPREF1078_RS17750	0.30	-1.5
116,815	-		HMPREF1078_RS17750	0.30	-2.7
116,816	+		HMPREF1078_RS17750	0.31	-1.6
116,816	+		HMPREF1078_RS17750	0.31	-1.5
116,816	+		HMPREF1078_RS17750	0.31	-2.5
116,817	-		HMPREF1078_RS17750	0.31	-0.3
116,817	-		HMPREF1078_RS17750	0.31	-0.3
116,817	-		HMPREF1078_RS17750	0.31	-0.7
116,919	-		HMPREF1078_RS17750	0.36	-1.3
116,930	+		HMPREF1078_RS17750	0.37	-2.3
116,931	-		HMPREF1078_RS17750	0.37	-2.2
116,955	-		HMPREF1078_RS17750	0.38	-0.5
116,980	-		HMPREF1078_RS17750	0.39	-3.4
117,052	+		HMPREF1078_RS17750	0.43	+1.3
117,053	-		HMPREF1078_RS17750	0.43	-1.8
117,059	+		HMPREF1078_RS17750	0.44	-1.0
117,059	+		HMPREF1078_RS17750	0.44	-3.1
117,097	+		HMPREF1078_RS17750	0.46	-1.7
117,097	+		HMPREF1078_RS17750	0.46	-1.3
117,097	+		HMPREF1078_RS17750	0.46	-1.7
117,097	+		HMPREF1078_RS17750	0.46	-0.7
117,099	+		HMPREF1078_RS17750	0.46	-1.9
117,183	+		HMPREF1078_RS17750	0.50	-0.3
117,184	-		HMPREF1078_RS17750	0.51	-0.3
117,250	-		HMPREF1078_RS17750	0.54	-1.7
117,254	+		HMPREF1078_RS17750	0.54	-1.3
117,254	+		HMPREF1078_RS17750	0.54	-0.7
117,374	+		HMPREF1078_RS17750	0.61	-0.7
117,374	+		HMPREF1078_RS17750	0.61	-1.0
117,475	+		HMPREF1078_RS17750	0.66	-3.3
117,475	+		HMPREF1078_RS17750	0.66	-1.9
117,476	-		HMPREF1078_RS17750	0.66	-1.3
117,476	-		HMPREF1078_RS17750	0.66	+0.3
117,476	-		HMPREF1078_RS17750	0.66	-1.9
117,481	+		HMPREF1078_RS17750	0.67	-4.0
117,543	+		HMPREF1078_RS17750	0.70	+0.3
117,545	+		HMPREF1078_RS17750	0.70	-2.4
117,589	-		HMPREF1078_RS17750	0.73	-1.9
117,658	+		HMPREF1078_RS17750	0.76	+1.3
117,658	+		HMPREF1078_RS17750	0.76	-1.3
117,658	+		HMPREF1078_RS17750	0.76	-1.3
117,658	+		HMPREF1078_RS17750	0.76	-0.3
117,658	+		HMPREF1078_RS17750	0.76	-1.9
117,659	-		HMPREF1078_RS17750	0.76	-1.7
117,662	+		HMPREF1078_RS17750	0.77	-0.3
117,663	-		HMPREF1078_RS17750	0.77	-2.4
117,726	+		HMPREF1078_RS17750	0.80	-1.5
117,726	+		HMPREF1078_RS17750	0.80	-2.4
117,727	-		HMPREF1078_RS17750	0.80	-1.9
117,727	-		HMPREF1078_RS17750	0.80	+0.5
117,762	-		HMPREF1078_RS17750	0.82	-0.8
117,762	-		HMPREF1078_RS17750	0.82	-1.0
117,811	-		HMPREF1078_RS17750	0.85	-2.4
117,893	+		HMPREF1078_RS17750	0.89	+1.3
117,893	+		HMPREF1078_RS17750	0.89	-0.5
117,893	+		HMPREF1078_RS17750	0.89	-1.9
117,893	+		HMPREF1078_RS17750	0.89	+0.1
117,894	-		HMPREF1078_RS17750	0.89	-3.0
117,894	-		HMPREF1078_RS17750	0.89	-2.0
117,995	+				-2.6
118,079	+				-1.3
118,080	-				+0.2
118,099	-				+1.6