Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS17245 and HMPREF1078_RS19035 are separated by 105 nucleotides HMPREF1078_RS19035 and HMPREF1078_RS17250 are separated by 12 nucleotides HMPREF1078_RS17250 and HMPREF1078_RS17255 are separated by 88 nucleotides HMPREF1078_RS17255 and HMPREF1078_RS17260 are separated by 213 nucleotides HMPREF1078_RS17260 and HMPREF1078_RS17265 are separated by 99 nucleotides
HMPREF1078_RS17245: HMPREF1078_RS17245 - beta-ketoacyl-ACP synthase III, at 166,558 to 167,562
_RS17245
HMPREF1078_RS19035: HMPREF1078_RS19035 - 50S ribosomal protein L32, at 167,668 to 167,853
_RS19035
HMPREF1078_RS17250: HMPREF1078_RS17250 - DUF177 domain-containing protein, at 167,866 to 168,453
_RS17250
HMPREF1078_RS17255: HMPREF1078_RS17255 - HAMP domain-containing sensor histidine kinase, at 168,542 to 169,696
_RS17255
HMPREF1078_RS17260: HMPREF1078_RS17260 - 5S ribosomal RNA, at 169,910 to 170,020
_RS17260
HMPREF1078_RS17265: HMPREF1078_RS17265 - 23S ribosomal RNA, at 170,120 to 172,995
_RS17265
Position (kb) 168
169
170 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 167.575 kb on - strand at 167.587 kb on - strand at 167.587 kb on - strand at 167.587 kb on - strand at 167.587 kb on - strand at 167.587 kb on - strand at 167.587 kb on - strand at 167.587 kb on - strand at 167.589 kb on - strand at 167.598 kb on - strand at 167.598 kb on - strand at 167.616 kb on + strand at 167.696 kb on - strand, within HMPREF1078_RS19035 at 167.875 kb on - strand at 167.930 kb on - strand, within HMPREF1078_RS17250 at 167.950 kb on - strand, within HMPREF1078_RS17250 at 168.433 kb on - strand at 168.531 kb on + strand at 168.531 kb on + strand at 168.543 kb on + strand at 168.550 kb on + strand at 168.551 kb on - strand at 168.552 kb on + strand at 168.553 kb on - strand at 168.604 kb on + strand at 168.605 kb on - strand at 168.611 kb on + strand at 168.611 kb on + strand at 168.627 kb on + strand at 168.688 kb on + strand, within HMPREF1078_RS17255 at 168.688 kb on + strand, within HMPREF1078_RS17255 at 168.700 kb on + strand, within HMPREF1078_RS17255 at 168.847 kb on + strand, within HMPREF1078_RS17255 at 168.932 kb on - strand, within HMPREF1078_RS17255 at 168.932 kb on - strand, within HMPREF1078_RS17255 at 168.943 kb on + strand, within HMPREF1078_RS17255 at 168.945 kb on + strand, within HMPREF1078_RS17255 at 168.945 kb on + strand, within HMPREF1078_RS17255 at 168.945 kb on + strand, within HMPREF1078_RS17255 at 168.946 kb on - strand, within HMPREF1078_RS17255 at 168.946 kb on - strand, within HMPREF1078_RS17255 at 168.946 kb on - strand, within HMPREF1078_RS17255 at 168.965 kb on - strand, within HMPREF1078_RS17255 at 168.970 kb on + strand, within HMPREF1078_RS17255 at 168.971 kb on - strand, within HMPREF1078_RS17255 at 168.971 kb on - strand, within HMPREF1078_RS17255 at 168.971 kb on - strand, within HMPREF1078_RS17255 at 169.082 kb on + strand, within HMPREF1078_RS17255 at 169.082 kb on + strand, within HMPREF1078_RS17255 at 169.083 kb on - strand, within HMPREF1078_RS17255 at 169.083 kb on - strand, within HMPREF1078_RS17255 at 169.083 kb on - strand, within HMPREF1078_RS17255 at 169.083 kb on - strand, within HMPREF1078_RS17255 at 169.084 kb on + strand, within HMPREF1078_RS17255 at 169.085 kb on - strand, within HMPREF1078_RS17255 at 169.101 kb on + strand, within HMPREF1078_RS17255 at 169.102 kb on - strand, within HMPREF1078_RS17255 at 169.130 kb on - strand, within HMPREF1078_RS17255 at 169.140 kb on - strand, within HMPREF1078_RS17255 at 169.140 kb on - strand, within HMPREF1078_RS17255 at 169.140 kb on - strand, within HMPREF1078_RS17255 at 169.159 kb on + strand, within HMPREF1078_RS17255 at 169.242 kb on - strand, within HMPREF1078_RS17255 at 169.250 kb on - strand, within HMPREF1078_RS17255 at 169.250 kb on - strand, within HMPREF1078_RS17255 at 169.260 kb on + strand, within HMPREF1078_RS17255 at 169.261 kb on - strand, within HMPREF1078_RS17255 at 169.261 kb on - strand, within HMPREF1078_RS17255 at 169.261 kb on - strand, within HMPREF1078_RS17255 at 169.266 kb on + strand, within HMPREF1078_RS17255 at 169.267 kb on - strand, within HMPREF1078_RS17255 at 169.302 kb on + strand, within HMPREF1078_RS17255 at 169.302 kb on + strand, within HMPREF1078_RS17255 at 169.303 kb on - strand, within HMPREF1078_RS17255 at 169.306 kb on - strand, within HMPREF1078_RS17255 at 169.306 kb on - strand, within HMPREF1078_RS17255 at 169.306 kb on - strand, within HMPREF1078_RS17255 at 169.311 kb on + strand, within HMPREF1078_RS17255 at 169.311 kb on + strand, within HMPREF1078_RS17255 at 169.311 kb on + strand, within HMPREF1078_RS17255 at 169.311 kb on + strand, within HMPREF1078_RS17255 at 169.311 kb on + strand, within HMPREF1078_RS17255 at 169.311 kb on + strand, within HMPREF1078_RS17255 at 169.311 kb on + strand, within HMPREF1078_RS17255 at 169.311 kb on + strand, within HMPREF1078_RS17255 at 169.311 kb on + strand, within HMPREF1078_RS17255 at 169.312 kb on - strand, within HMPREF1078_RS17255 at 169.336 kb on - strand, within HMPREF1078_RS17255 at 169.349 kb on - strand, within HMPREF1078_RS17255 at 169.377 kb on - strand, within HMPREF1078_RS17255 at 169.418 kb on - strand, within HMPREF1078_RS17255 at 169.457 kb on + strand, within HMPREF1078_RS17255 at 169.458 kb on - strand, within HMPREF1078_RS17255 at 169.474 kb on + strand, within HMPREF1078_RS17255 at 169.475 kb on - strand, within HMPREF1078_RS17255 at 169.475 kb on - strand, within HMPREF1078_RS17255 at 169.525 kb on + strand, within HMPREF1078_RS17255 at 169.526 kb on - strand, within HMPREF1078_RS17255 at 169.526 kb on - strand, within HMPREF1078_RS17255 at 169.543 kb on + strand, within HMPREF1078_RS17255 at 169.556 kb on + strand, within HMPREF1078_RS17255 at 169.557 kb on - strand, within HMPREF1078_RS17255 at 169.557 kb on - strand, within HMPREF1078_RS17255 at 169.596 kb on - strand at 169.603 kb on + strand at 169.645 kb on + strand at 169.655 kb on + strand at 169.683 kb on + strand at 169.683 kb on + strand at 169.683 kb on + strand at 169.683 kb on + strand at 169.683 kb on + strand at 169.683 kb on + strand at 169.683 kb on + strand at 169.683 kb on + strand at 169.683 kb on + strand at 169.684 kb on - strand at 169.684 kb on - strand at 169.684 kb on - strand at 169.684 kb on - strand at 169.684 kb on - strand at 169.684 kb on - strand at 169.684 kb on - strand at 169.684 kb on - strand at 169.684 kb on - strand at 169.684 kb on - strand at 169.684 kb on - strand at 169.684 kb on - strand at 169.686 kb on - strand at 169.686 kb on - strand at 169.688 kb on - strand at 169.688 kb on - strand at 169.715 kb on + strand at 169.715 kb on + strand at 169.715 kb on + strand at 169.715 kb on + strand at 169.716 kb on - strand at 169.716 kb on - strand at 169.716 kb on - strand at 169.716 kb on - strand at 169.717 kb on + strand at 169.717 kb on + strand at 169.718 kb on - strand at 169.718 kb on - strand at 169.718 kb on - strand at 169.718 kb on - strand at 169.718 kb on - strand at 169.718 kb on - strand at 169.718 kb on - strand at 169.719 kb on + strand at 169.719 kb on + strand at 169.735 kb on + strand at 169.735 kb on + strand at 169.735 kb on + strand at 169.735 kb on + strand at 169.736 kb on - strand at 169.740 kb on + strand at 169.740 kb on + strand at 169.743 kb on + strand at 169.746 kb on + strand at 169.747 kb on - strand at 169.748 kb on + strand at 169.748 kb on + strand at 169.748 kb on + strand at 169.748 kb on + strand at 169.748 kb on + strand at 169.748 kb on + strand at 169.748 kb on + strand at 169.748 kb on + strand at 169.749 kb on - strand at 169.749 kb on - strand at 169.749 kb on - strand at 169.749 kb on - strand at 169.749 kb on - strand at 169.749 kb on - strand at 169.751 kb on + strand at 169.751 kb on + strand at 169.751 kb on + strand at 169.752 kb on - strand at 169.794 kb on + strand at 169.794 kb on + strand at 169.809 kb on - strand at 169.829 kb on + strand at 169.829 kb on + strand at 169.830 kb on - strand at 170.071 kb on - strand at 170.071 kb on - strand at 170.071 kb on - strand at 170.104 kb on - strand at 170.104 kb on - strand at 170.104 kb on - strand at 170.104 kb on - strand at 170.106 kb on - strand at 170.106 kb on - strand at 170.106 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day4 remove 167,575 - -1.9 167,587 - -0.4 167,587 - +0.8 167,587 - -0.3 167,587 - +0.3 167,587 - -0.5 167,587 - -1.6 167,587 - -1.7 167,589 - -0.4 167,598 - +0.6 167,598 - +1.2 167,616 + +0.3 167,696 - HMPREF1078_RS19035 0.15 +0.3 167,875 - +0.3 167,930 - HMPREF1078_RS17250 0.11 -1.6 167,950 - HMPREF1078_RS17250 0.14 +0.3 168,433 - +0.3 168,531 + -0.2 168,531 + -1.3 168,543 + -2.7 168,550 + -0.3 168,551 - +1.2 168,552 + -0.3 168,553 - +0.1 168,604 + -1.7 168,605 - -0.7 168,611 + -2.2 168,611 + -2.9 168,627 + -2.6 168,688 + HMPREF1078_RS17255 0.13 +0.3 168,688 + HMPREF1078_RS17255 0.13 -2.3 168,700 + HMPREF1078_RS17255 0.14 -1.7 168,847 + HMPREF1078_RS17255 0.26 -2.6 168,932 - HMPREF1078_RS17255 0.34 -1.9 168,932 - HMPREF1078_RS17255 0.34 -3.0 168,943 + HMPREF1078_RS17255 0.35 -3.6 168,945 + HMPREF1078_RS17255 0.35 +0.3 168,945 + HMPREF1078_RS17255 0.35 -2.1 168,945 + HMPREF1078_RS17255 0.35 -0.9 168,946 - HMPREF1078_RS17255 0.35 -4.8 168,946 - HMPREF1078_RS17255 0.35 -1.1 168,946 - HMPREF1078_RS17255 0.35 +0.3 168,965 - HMPREF1078_RS17255 0.37 -0.9 168,970 + HMPREF1078_RS17255 0.37 -1.7 168,971 - HMPREF1078_RS17255 0.37 -3.1 168,971 - HMPREF1078_RS17255 0.37 -1.6 168,971 - HMPREF1078_RS17255 0.37 -3.8 169,082 + HMPREF1078_RS17255 0.47 -0.3 169,082 + HMPREF1078_RS17255 0.47 -3.1 169,083 - HMPREF1078_RS17255 0.47 -3.6 169,083 - HMPREF1078_RS17255 0.47 -2.2 169,083 - HMPREF1078_RS17255 0.47 -1.9 169,083 - HMPREF1078_RS17255 0.47 -3.0 169,084 + HMPREF1078_RS17255 0.47 -1.9 169,085 - HMPREF1078_RS17255 0.47 -1.6 169,101 + HMPREF1078_RS17255 0.48 -3.1 169,102 - HMPREF1078_RS17255 0.48 -2.7 169,130 - HMPREF1078_RS17255 0.51 -1.7 169,140 - HMPREF1078_RS17255 0.52 -3.5 169,140 - HMPREF1078_RS17255 0.52 +1.3 169,140 - HMPREF1078_RS17255 0.52 -3.2 169,159 + HMPREF1078_RS17255 0.53 -3.0 169,242 - HMPREF1078_RS17255 0.61 -1.9 169,250 - HMPREF1078_RS17255 0.61 +1.3 169,250 - HMPREF1078_RS17255 0.61 -3.9 169,260 + HMPREF1078_RS17255 0.62 -2.1 169,261 - HMPREF1078_RS17255 0.62 -1.6 169,261 - HMPREF1078_RS17255 0.62 -0.7 169,261 - HMPREF1078_RS17255 0.62 -2.9 169,266 + HMPREF1078_RS17255 0.63 -0.2 169,267 - HMPREF1078_RS17255 0.63 -2.4 169,302 + HMPREF1078_RS17255 0.66 +0.0 169,302 + HMPREF1078_RS17255 0.66 -2.8 169,303 - HMPREF1078_RS17255 0.66 -1.6 169,306 - HMPREF1078_RS17255 0.66 -0.2 169,306 - HMPREF1078_RS17255 0.66 -1.9 169,306 - HMPREF1078_RS17255 0.66 -0.7 169,311 + HMPREF1078_RS17255 0.67 -3.0 169,311 + HMPREF1078_RS17255 0.67 -1.7 169,311 + HMPREF1078_RS17255 0.67 -4.0 169,311 + HMPREF1078_RS17255 0.67 -2.4 169,311 + HMPREF1078_RS17255 0.67 -2.1 169,311 + HMPREF1078_RS17255 0.67 -2.7 169,311 + HMPREF1078_RS17255 0.67 -3.7 169,311 + HMPREF1078_RS17255 0.67 -3.9 169,311 + HMPREF1078_RS17255 0.67 -1.1 169,312 - HMPREF1078_RS17255 0.67 -1.7 169,336 - HMPREF1078_RS17255 0.69 -0.7 169,349 - HMPREF1078_RS17255 0.70 -0.3 169,377 - HMPREF1078_RS17255 0.72 -3.3 169,418 - HMPREF1078_RS17255 0.76 -3.5 169,457 + HMPREF1078_RS17255 0.79 -2.4 169,458 - HMPREF1078_RS17255 0.79 -2.2 169,474 + HMPREF1078_RS17255 0.81 -1.6 169,475 - HMPREF1078_RS17255 0.81 -3.1 169,475 - HMPREF1078_RS17255 0.81 -2.7 169,525 + HMPREF1078_RS17255 0.85 -1.9 169,526 - HMPREF1078_RS17255 0.85 -1.9 169,526 - HMPREF1078_RS17255 0.85 -1.7 169,543 + HMPREF1078_RS17255 0.87 -2.6 169,556 + HMPREF1078_RS17255 0.88 +1.3 169,557 - HMPREF1078_RS17255 0.88 -1.8 169,557 - HMPREF1078_RS17255 0.88 -1.9 169,596 - -2.2 169,603 + -2.4 169,645 + -1.8 169,655 + -2.1 169,683 + +0.8 169,683 + -2.9 169,683 + -3.8 169,683 + -3.4 169,683 + -1.3 169,683 + +0.3 169,683 + -2.3 169,683 + -0.7 169,683 + -2.9 169,684 - -2.4 169,684 - -1.6 169,684 - -1.8 169,684 - -2.4 169,684 - -1.9 169,684 - -1.9 169,684 - -2.2 169,684 - -0.3 169,684 - -1.6 169,684 - -2.0 169,684 - -0.3 169,684 - -2.6 169,686 - -2.1 169,686 - -1.6 169,688 - -0.3 169,688 - -0.3 169,715 + -3.0 169,715 + -1.6 169,715 + +0.3 169,715 + -1.6 169,716 - +0.1 169,716 - -0.3 169,716 - +0.2 169,716 - +2.3 169,717 + -3.3 169,717 + -1.5 169,718 - +1.6 169,718 - -1.3 169,718 - +1.3 169,718 - +0.4 169,718 - +1.8 169,718 - -0.5 169,718 - +0.1 169,719 + -0.9 169,719 + -0.7 169,735 + -4.7 169,735 + -2.6 169,735 + -0.3 169,735 + -1.6 169,736 - -2.1 169,740 + -1.7 169,740 + -3.0 169,743 + +0.4 169,746 + -1.7 169,747 - -1.5 169,748 + -1.5 169,748 + +2.3 169,748 + +0.8 169,748 + +0.6 169,748 + +0.4 169,748 + +0.1 169,748 + -0.3 169,748 + +1.3 169,749 - -1.6 169,749 - -1.1 169,749 - -1.8 169,749 - -0.4 169,749 - -0.7 169,749 - -1.7 169,751 + +0.3 169,751 + +1.2 169,751 + +0.4 169,752 - -1.1 169,794 + -1.0 169,794 + +0.8 169,809 - +0.3 169,829 + +1.5 169,829 + -0.6 169,830 - +0.1 170,071 - -2.2 170,071 - +1.3 170,071 - +0.3 170,104 - +1.3 170,104 - -0.3 170,104 - +1.3 170,104 - -0.3 170,106 - +3.6 170,106 - -0.7 170,106 - +0.3
Or see this region's nucleotide sequence