Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS16860 and HMPREF1078_RS16865 are separated by 11 nucleotides HMPREF1078_RS16865 and HMPREF1078_RS19030 are separated by 35 nucleotides HMPREF1078_RS19030 and HMPREF1078_RS16870 are separated by 14 nucleotides HMPREF1078_RS16870 and HMPREF1078_RS16875 are separated by 16 nucleotides HMPREF1078_RS16875 and HMPREF1078_RS16880 are separated by 5 nucleotides
HMPREF1078_RS16860: HMPREF1078_RS16860 - 30S ribosomal protein S11, at 91,403 to 91,792
_RS16860
HMPREF1078_RS16865: HMPREF1078_RS16865 - 30S ribosomal protein S13, at 91,804 to 92,184
_RS16865
HMPREF1078_RS19030: HMPREF1078_RS19030 - type B 50S ribosomal protein L36, at 92,220 to 92,336
_RS19030
HMPREF1078_RS16870: HMPREF1078_RS16870 - translation initiation factor IF-1, at 92,351 to 92,569
_RS16870
HMPREF1078_RS16875: HMPREF1078_RS16875 - type I methionyl aminopeptidase, at 92,586 to 93,371
_RS16875
HMPREF1078_RS16880: HMPREF1078_RS16880 - preprotein translocase subunit SecY, at 93,377 to 94,717
_RS16880
Position (kb) 92
93
94 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 92.353 kb on - strand at 92.357 kb on - strand at 92.357 kb on - strand at 92.601 kb on - strand at 92.601 kb on - strand at 92.605 kb on - strand at 92.667 kb on - strand, within HMPREF1078_RS16875 at 92.667 kb on - strand, within HMPREF1078_RS16875 at 92.667 kb on - strand, within HMPREF1078_RS16875 at 92.667 kb on - strand, within HMPREF1078_RS16875 at 92.667 kb on - strand, within HMPREF1078_RS16875 at 92.697 kb on - strand, within HMPREF1078_RS16875 at 92.745 kb on - strand, within HMPREF1078_RS16875 at 92.745 kb on - strand, within HMPREF1078_RS16875 at 92.757 kb on - strand, within HMPREF1078_RS16875 at 92.875 kb on - strand, within HMPREF1078_RS16875 at 92.912 kb on - strand, within HMPREF1078_RS16875 at 92.934 kb on - strand, within HMPREF1078_RS16875 at 92.967 kb on - strand, within HMPREF1078_RS16875 at 93.045 kb on - strand, within HMPREF1078_RS16875 at 93.047 kb on - strand, within HMPREF1078_RS16875 at 93.097 kb on - strand, within HMPREF1078_RS16875 at 93.097 kb on - strand, within HMPREF1078_RS16875 at 93.097 kb on - strand, within HMPREF1078_RS16875 at 93.097 kb on - strand, within HMPREF1078_RS16875 at 93.099 kb on - strand, within HMPREF1078_RS16875 at 93.099 kb on - strand, within HMPREF1078_RS16875 at 93.099 kb on - strand, within HMPREF1078_RS16875 at 93.099 kb on - strand, within HMPREF1078_RS16875 at 93.099 kb on - strand, within HMPREF1078_RS16875 at 93.099 kb on - strand, within HMPREF1078_RS16875 at 93.099 kb on - strand, within HMPREF1078_RS16875 at 93.138 kb on - strand, within HMPREF1078_RS16875 at 93.172 kb on - strand, within HMPREF1078_RS16875 at 93.172 kb on - strand, within HMPREF1078_RS16875 at 93.199 kb on - strand, within HMPREF1078_RS16875 at 93.199 kb on - strand, within HMPREF1078_RS16875 at 93.222 kb on - strand, within HMPREF1078_RS16875 at 93.222 kb on - strand, within HMPREF1078_RS16875 at 93.228 kb on - strand, within HMPREF1078_RS16875 at 93.228 kb on - strand, within HMPREF1078_RS16875 at 93.249 kb on - strand, within HMPREF1078_RS16875 at 93.264 kb on - strand, within HMPREF1078_RS16875 at 93.282 kb on - strand, within HMPREF1078_RS16875 at 93.309 kb on - strand at 93.365 kb on - strand at 93.365 kb on - strand at 93.375 kb on - strand at 93.379 kb on - strand at 93.379 kb on - strand at 93.379 kb on - strand at 93.382 kb on - strand at 93.382 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day4 remove 92,353 - +0.3 92,357 - -0.6 92,357 - -0.7 92,601 - +0.3 92,601 - -2.2 92,605 - -1.9 92,667 - HMPREF1078_RS16875 0.10 +0.3 92,667 - HMPREF1078_RS16875 0.10 -0.3 92,667 - HMPREF1078_RS16875 0.10 -1.7 92,667 - HMPREF1078_RS16875 0.10 -1.1 92,667 - HMPREF1078_RS16875 0.10 -4.1 92,697 - HMPREF1078_RS16875 0.14 +0.3 92,745 - HMPREF1078_RS16875 0.20 -1.6 92,745 - HMPREF1078_RS16875 0.20 -1.1 92,757 - HMPREF1078_RS16875 0.22 -1.3 92,875 - HMPREF1078_RS16875 0.37 -3.8 92,912 - HMPREF1078_RS16875 0.41 -1.3 92,934 - HMPREF1078_RS16875 0.44 -0.3 92,967 - HMPREF1078_RS16875 0.48 +0.3 93,045 - HMPREF1078_RS16875 0.58 -1.1 93,047 - HMPREF1078_RS16875 0.59 -1.6 93,097 - HMPREF1078_RS16875 0.65 -1.1 93,097 - HMPREF1078_RS16875 0.65 +1.3 93,097 - HMPREF1078_RS16875 0.65 -1.1 93,097 - HMPREF1078_RS16875 0.65 -2.3 93,099 - HMPREF1078_RS16875 0.65 +0.3 93,099 - HMPREF1078_RS16875 0.65 -0.3 93,099 - HMPREF1078_RS16875 0.65 -3.3 93,099 - HMPREF1078_RS16875 0.65 -2.3 93,099 - HMPREF1078_RS16875 0.65 -2.3 93,099 - HMPREF1078_RS16875 0.65 -0.7 93,099 - HMPREF1078_RS16875 0.65 +0.3 93,138 - HMPREF1078_RS16875 0.70 -1.6 93,172 - HMPREF1078_RS16875 0.75 -2.8 93,172 - HMPREF1078_RS16875 0.75 -2.3 93,199 - HMPREF1078_RS16875 0.78 -3.6 93,199 - HMPREF1078_RS16875 0.78 -1.7 93,222 - HMPREF1078_RS16875 0.81 -1.3 93,222 - HMPREF1078_RS16875 0.81 -1.1 93,228 - HMPREF1078_RS16875 0.82 -2.3 93,228 - HMPREF1078_RS16875 0.82 -4.4 93,249 - HMPREF1078_RS16875 0.84 -2.7 93,264 - HMPREF1078_RS16875 0.86 -3.3 93,282 - HMPREF1078_RS16875 0.89 -1.7 93,309 - -0.7 93,365 - -0.7 93,365 - -4.5 93,375 - -3.7 93,379 - -1.8 93,379 - -2.9 93,379 - +0.3 93,382 - +0.3 93,382 - -0.3
Or see this region's nucleotide sequence