Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS16160

Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1078_RS16155 and HMPREF1078_RS16160 are separated by 13 nucleotidesHMPREF1078_RS16160 and HMPREF1078_RS16165 overlap by 74 nucleotides HMPREF1078_RS16155: HMPREF1078_RS16155 - rod shape-determining protein RodA, at 355,215 to 356,699 _RS16155 HMPREF1078_RS16160: HMPREF1078_RS16160 - gliding motility lipoprotein GldH, at 356,713 to 357,237 _RS16160 HMPREF1078_RS16165: HMPREF1078_RS16165 - regulatory iron-sulfur-containing complex subunit RicT, at 357,164 to 358,591 _RS16165 Position (kb) 356 357 358Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 356.698 kb on - strandat 356.796 kb on + strand, within HMPREF1078_RS16160at 356.796 kb on + strand, within HMPREF1078_RS16160at 356.796 kb on + strand, within HMPREF1078_RS16160at 356.796 kb on + strand, within HMPREF1078_RS16160at 356.796 kb on + strand, within HMPREF1078_RS16160at 356.796 kb on + strand, within HMPREF1078_RS16160at 356.797 kb on - strand, within HMPREF1078_RS16160at 356.797 kb on - strand, within HMPREF1078_RS16160at 356.797 kb on - strand, within HMPREF1078_RS16160at 356.797 kb on - strand, within HMPREF1078_RS16160at 356.797 kb on - strand, within HMPREF1078_RS16160at 356.797 kb on - strand, within HMPREF1078_RS16160at 356.798 kb on + strand, within HMPREF1078_RS16160at 356.799 kb on - strand, within HMPREF1078_RS16160at 356.820 kb on + strand, within HMPREF1078_RS16160at 356.821 kb on - strand, within HMPREF1078_RS16160at 356.822 kb on + strand, within HMPREF1078_RS16160at 356.822 kb on + strand, within HMPREF1078_RS16160at 356.852 kb on + strand, within HMPREF1078_RS16160at 356.962 kb on + strand, within HMPREF1078_RS16160at 356.972 kb on + strand, within HMPREF1078_RS16160at 356.979 kb on - strand, within HMPREF1078_RS16160at 356.986 kb on - strand, within HMPREF1078_RS16160at 356.986 kb on - strand, within HMPREF1078_RS16160at 356.995 kb on + strand, within HMPREF1078_RS16160at 357.025 kb on + strand, within HMPREF1078_RS16160at 357.025 kb on + strand, within HMPREF1078_RS16160at 357.025 kb on + strand, within HMPREF1078_RS16160at 357.025 kb on + strand, within HMPREF1078_RS16160at 357.026 kb on - strand, within HMPREF1078_RS16160at 357.026 kb on - strand, within HMPREF1078_RS16160at 357.026 kb on - strand, within HMPREF1078_RS16160at 357.026 kb on - strand, within HMPREF1078_RS16160at 357.027 kb on + strand, within HMPREF1078_RS16160at 357.027 kb on + strand, within HMPREF1078_RS16160at 357.027 kb on + strand, within HMPREF1078_RS16160at 357.028 kb on - strand, within HMPREF1078_RS16160at 357.028 kb on - strand, within HMPREF1078_RS16160at 357.028 kb on - strand, within HMPREF1078_RS16160at 357.028 kb on - strand, within HMPREF1078_RS16160at 357.028 kb on - strand, within HMPREF1078_RS16160at 357.028 kb on - strand, within HMPREF1078_RS16160at 357.050 kb on + strand, within HMPREF1078_RS16160at 357.050 kb on + strand, within HMPREF1078_RS16160at 357.051 kb on - strand, within HMPREF1078_RS16160at 357.051 kb on - strand, within HMPREF1078_RS16160at 357.051 kb on - strand, within HMPREF1078_RS16160at 357.053 kb on + strand, within HMPREF1078_RS16160at 357.054 kb on - strand, within HMPREF1078_RS16160at 357.054 kb on - strand, within HMPREF1078_RS16160at 357.054 kb on - strand, within HMPREF1078_RS16160at 357.104 kb on + strand, within HMPREF1078_RS16160at 357.104 kb on + strand, within HMPREF1078_RS16160at 357.105 kb on - strand, within HMPREF1078_RS16160at 357.214 kb on + strandat 357.215 kb on - strandat 357.251 kb on - strandat 357.260 kb on + strandat 357.712 kb on - strand, within HMPREF1078_RS16165at 357.712 kb on - strand, within HMPREF1078_RS16165at 357.734 kb on - strand, within HMPREF1078_RS16165at 357.751 kb on - strand, within HMPREF1078_RS16165at 357.753 kb on + strand, within HMPREF1078_RS16165at 357.753 kb on + strand, within HMPREF1078_RS16165at 357.754 kb on - strand, within HMPREF1078_RS16165at 357.754 kb on - strand, within HMPREF1078_RS16165at 357.757 kb on + strand, within HMPREF1078_RS16165at 357.757 kb on + strand, within HMPREF1078_RS16165at 357.757 kb on + strand, within HMPREF1078_RS16165at 357.757 kb on + strand, within HMPREF1078_RS16165at 357.758 kb on - strand, within HMPREF1078_RS16165at 357.758 kb on - strand, within HMPREF1078_RS16165at 357.758 kb on - strand, within HMPREF1078_RS16165at 357.758 kb on - strand, within HMPREF1078_RS16165at 357.817 kb on - strand, within HMPREF1078_RS16165at 357.817 kb on - strand, within HMPREF1078_RS16165at 357.817 kb on - strand, within HMPREF1078_RS16165at 357.831 kb on + strand, within HMPREF1078_RS16165at 357.832 kb on - strand, within HMPREF1078_RS16165at 357.832 kb on - strand, within HMPREF1078_RS16165at 357.891 kb on - strand, within HMPREF1078_RS16165at 357.891 kb on - strand, within HMPREF1078_RS16165at 357.891 kb on - strand, within HMPREF1078_RS16165at 357.893 kb on - strand, within HMPREF1078_RS16165at 357.921 kb on - strand, within HMPREF1078_RS16165at 357.927 kb on - strand, within HMPREF1078_RS16165at 357.927 kb on - strand, within HMPREF1078_RS16165at 358.228 kb on - strand, within HMPREF1078_RS16165

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day4
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356,698 - +2.8
356,796 + HMPREF1078_RS16160 0.16 -1.4
356,796 + HMPREF1078_RS16160 0.16 -2.7
356,796 + HMPREF1078_RS16160 0.16 -4.3
356,796 + HMPREF1078_RS16160 0.16 -1.6
356,796 + HMPREF1078_RS16160 0.16 -3.7
356,796 + HMPREF1078_RS16160 0.16 -1.1
356,797 - HMPREF1078_RS16160 0.16 -2.7
356,797 - HMPREF1078_RS16160 0.16 -2.5
356,797 - HMPREF1078_RS16160 0.16 -1.8
356,797 - HMPREF1078_RS16160 0.16 -3.6
356,797 - HMPREF1078_RS16160 0.16 -3.1
356,797 - HMPREF1078_RS16160 0.16 -3.0
356,798 + HMPREF1078_RS16160 0.16 -4.0
356,799 - HMPREF1078_RS16160 0.16 +0.2
356,820 + HMPREF1078_RS16160 0.20 -3.1
356,821 - HMPREF1078_RS16160 0.21 -3.7
356,822 + HMPREF1078_RS16160 0.21 -4.2
356,822 + HMPREF1078_RS16160 0.21 -2.3
356,852 + HMPREF1078_RS16160 0.26 -3.1
356,962 + HMPREF1078_RS16160 0.47 -3.1
356,972 + HMPREF1078_RS16160 0.49 -1.1
356,979 - HMPREF1078_RS16160 0.51 -3.2
356,986 - HMPREF1078_RS16160 0.52 -3.9
356,986 - HMPREF1078_RS16160 0.52 -2.5
356,995 + HMPREF1078_RS16160 0.54 -0.4
357,025 + HMPREF1078_RS16160 0.59 -0.4
357,025 + HMPREF1078_RS16160 0.59 -3.5
357,025 + HMPREF1078_RS16160 0.59 -2.8
357,025 + HMPREF1078_RS16160 0.59 +0.2
357,026 - HMPREF1078_RS16160 0.60 -3.5
357,026 - HMPREF1078_RS16160 0.60 -1.1
357,026 - HMPREF1078_RS16160 0.60 -2.4
357,026 - HMPREF1078_RS16160 0.60 -2.1
357,027 + HMPREF1078_RS16160 0.60 -3.7
357,027 + HMPREF1078_RS16160 0.60 -5.2
357,027 + HMPREF1078_RS16160 0.60 -2.0
357,028 - HMPREF1078_RS16160 0.60 -3.4
357,028 - HMPREF1078_RS16160 0.60 -2.3
357,028 - HMPREF1078_RS16160 0.60 -2.1
357,028 - HMPREF1078_RS16160 0.60 -3.1
357,028 - HMPREF1078_RS16160 0.60 -0.4
357,028 - HMPREF1078_RS16160 0.60 -4.8
357,050 + HMPREF1078_RS16160 0.64 -2.9
357,050 + HMPREF1078_RS16160 0.64 -1.1
357,051 - HMPREF1078_RS16160 0.64 -2.3
357,051 - HMPREF1078_RS16160 0.64 -3.9
357,051 - HMPREF1078_RS16160 0.64 -0.4
357,053 + HMPREF1078_RS16160 0.65 -2.6
357,054 - HMPREF1078_RS16160 0.65 -2.8
357,054 - HMPREF1078_RS16160 0.65 -3.9
357,054 - HMPREF1078_RS16160 0.65 -2.7
357,104 + HMPREF1078_RS16160 0.74 -2.3
357,104 + HMPREF1078_RS16160 0.74 -4.7
357,105 - HMPREF1078_RS16160 0.75 -2.7
357,214 + -2.0
357,215 - -1.4
357,251 - +0.3
357,260 + -0.8
357,712 - HMPREF1078_RS16165 0.38 -0.1
357,712 - HMPREF1078_RS16165 0.38 -1.6
357,734 - HMPREF1078_RS16165 0.40 -0.7
357,751 - HMPREF1078_RS16165 0.41 -1.8
357,753 + HMPREF1078_RS16165 0.41 -2.0
357,753 + HMPREF1078_RS16165 0.41 -2.1
357,754 - HMPREF1078_RS16165 0.41 -0.3
357,754 - HMPREF1078_RS16165 0.41 -1.0
357,757 + HMPREF1078_RS16165 0.42 +0.2
357,757 + HMPREF1078_RS16165 0.42 -2.7
357,757 + HMPREF1078_RS16165 0.42 -3.3
357,757 + HMPREF1078_RS16165 0.42 -1.1
357,758 - HMPREF1078_RS16165 0.42 -0.7
357,758 - HMPREF1078_RS16165 0.42 -0.7
357,758 - HMPREF1078_RS16165 0.42 -0.6
357,758 - HMPREF1078_RS16165 0.42 +0.5
357,817 - HMPREF1078_RS16165 0.46 -2.1
357,817 - HMPREF1078_RS16165 0.46 -3.3
357,817 - HMPREF1078_RS16165 0.46 -2.7
357,831 + HMPREF1078_RS16165 0.47 -1.1
357,832 - HMPREF1078_RS16165 0.47 -2.6
357,832 - HMPREF1078_RS16165 0.47 -1.8
357,891 - HMPREF1078_RS16165 0.51 +0.6
357,891 - HMPREF1078_RS16165 0.51 -0.8
357,891 - HMPREF1078_RS16165 0.51 -2.8
357,893 - HMPREF1078_RS16165 0.51 +0.2
357,921 - HMPREF1078_RS16165 0.53 -1.1
357,927 - HMPREF1078_RS16165 0.53 -2.6
357,927 - HMPREF1078_RS16165 0.53 -0.4
358,228 - HMPREF1078_RS16165 0.75 -1.8

Or see this region's nucleotide sequence