Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS16130

Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1078_RS16120 and HMPREF1078_RS16125 are separated by 516 nucleotidesHMPREF1078_RS16125 and HMPREF1078_RS16130 are separated by 162 nucleotidesHMPREF1078_RS16130 and HMPREF1078_RS16135 are separated by 107 nucleotides HMPREF1078_RS16120: HMPREF1078_RS16120 - outer membrane beta-barrel protein, at 347,502 to 348,413 _RS16120 HMPREF1078_RS16125: HMPREF1078_RS16125 - hypothetical protein, at 348,930 to 349,118 _RS16125 HMPREF1078_RS16130: HMPREF1078_RS16130 - bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase, at 349,281 to 350,804 _RS16130 HMPREF1078_RS16135: HMPREF1078_RS16135 - rod shape-determining protein, at 350,912 to 351,931 _RS16135 Position (kb) 349 350 351Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4at 348.388 kb on - strandat 348.411 kb on + strandat 348.412 kb on - strandat 348.482 kb on - strandat 348.520 kb on + strandat 348.520 kb on + strandat 348.520 kb on + strandat 348.521 kb on - strandat 348.521 kb on - strandat 348.521 kb on - strandat 348.528 kb on - strandat 348.534 kb on + strandat 348.534 kb on + strandat 348.535 kb on - strandat 348.535 kb on - strandat 348.535 kb on - strandat 348.536 kb on + strandat 348.537 kb on - strandat 348.540 kb on + strandat 348.541 kb on - strandat 348.544 kb on - strandat 348.546 kb on + strandat 348.547 kb on - strandat 348.550 kb on + strandat 348.564 kb on - strandat 348.564 kb on - strandat 348.566 kb on + strandat 348.569 kb on + strandat 348.569 kb on + strandat 348.573 kb on + strandat 348.574 kb on - strandat 348.574 kb on - strandat 348.574 kb on - strandat 348.574 kb on - strandat 348.581 kb on - strandat 348.582 kb on + strandat 348.582 kb on + strandat 348.583 kb on - strandat 348.583 kb on - strandat 348.583 kb on - strandat 348.583 kb on - strandat 348.586 kb on + strandat 348.587 kb on - strandat 348.587 kb on - strandat 348.593 kb on - strandat 348.593 kb on - strandat 348.597 kb on - strandat 348.606 kb on - strandat 348.606 kb on - strandat 348.606 kb on - strandat 348.606 kb on - strandat 348.606 kb on - strandat 348.616 kb on + strandat 348.640 kb on + strandat 348.640 kb on + strandat 348.765 kb on - strandat 348.777 kb on + strandat 348.790 kb on - strandat 348.833 kb on + strandat 348.834 kb on - strandat 348.834 kb on - strandat 348.835 kb on + strandat 348.835 kb on + strandat 348.836 kb on - strandat 348.836 kb on - strandat 348.838 kb on + strandat 348.895 kb on + strandat 348.896 kb on - strandat 348.896 kb on - strandat 348.941 kb on - strandat 349.018 kb on - strand, within HMPREF1078_RS16125at 349.083 kb on - strand, within HMPREF1078_RS16125at 349.112 kb on + strandat 349.173 kb on - strandat 349.199 kb on + strandat 349.206 kb on + strandat 349.211 kb on + strandat 349.216 kb on + strandat 349.216 kb on + strandat 349.220 kb on + strandat 349.220 kb on + strandat 349.220 kb on + strandat 349.220 kb on + strandat 349.220 kb on + strandat 349.220 kb on + strandat 349.224 kb on + strandat 349.224 kb on + strandat 349.660 kb on + strand, within HMPREF1078_RS16130at 349.660 kb on + strand, within HMPREF1078_RS16130at 349.664 kb on + strand, within HMPREF1078_RS16130at 349.666 kb on + strand, within HMPREF1078_RS16130at 349.706 kb on + strand, within HMPREF1078_RS16130at 349.714 kb on + strand, within HMPREF1078_RS16130at 349.714 kb on + strand, within HMPREF1078_RS16130at 349.723 kb on + strand, within HMPREF1078_RS16130at 349.723 kb on + strand, within HMPREF1078_RS16130at 349.740 kb on + strand, within HMPREF1078_RS16130at 349.973 kb on + strand, within HMPREF1078_RS16130at 349.973 kb on + strand, within HMPREF1078_RS16130at 349.973 kb on + strand, within HMPREF1078_RS16130at 349.973 kb on + strand, within HMPREF1078_RS16130at 349.994 kb on + strand, within HMPREF1078_RS16130at 350.007 kb on + strand, within HMPREF1078_RS16130at 350.007 kb on + strand, within HMPREF1078_RS16130at 350.038 kb on + strand, within HMPREF1078_RS16130at 350.080 kb on + strand, within HMPREF1078_RS16130at 350.087 kb on + strand, within HMPREF1078_RS16130at 350.087 kb on + strand, within HMPREF1078_RS16130at 350.087 kb on + strand, within HMPREF1078_RS16130at 350.200 kb on + strand, within HMPREF1078_RS16130at 350.200 kb on + strand, within HMPREF1078_RS16130at 350.306 kb on + strand, within HMPREF1078_RS16130at 350.311 kb on + strand, within HMPREF1078_RS16130at 350.311 kb on + strand, within HMPREF1078_RS16130at 350.321 kb on + strand, within HMPREF1078_RS16130at 350.393 kb on + strand, within HMPREF1078_RS16130at 350.396 kb on + strand, within HMPREF1078_RS16130at 350.396 kb on + strand, within HMPREF1078_RS16130at 350.585 kb on + strand, within HMPREF1078_RS16130at 350.630 kb on + strand, within HMPREF1078_RS16130at 350.690 kb on + strandat 350.720 kb on + strandat 350.745 kb on + strandat 350.745 kb on + strandat 350.802 kb on + strandat 350.802 kb on + strandat 350.802 kb on + strandat 350.812 kb on + strandat 350.815 kb on + strandat 350.822 kb on + strandat 350.831 kb on + strandat 350.831 kb on + strandat 350.865 kb on + strandat 350.865 kb on + strandat 350.880 kb on + strandat 350.880 kb on + strandat 350.880 kb on + strandat 350.887 kb on + strandat 350.894 kb on + strandat 350.894 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day4
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348,388 - -2.5
348,411 + +0.9
348,412 - -2.1
348,482 - -1.6
348,520 + +0.4
348,520 + +4.4
348,520 + -0.4
348,521 - -3.6
348,521 - +0.3
348,521 - -1.3
348,528 - +0.4
348,534 + +0.3
348,534 + -0.1
348,535 - -0.1
348,535 - -0.3
348,535 - -1.1
348,536 + -2.3
348,537 - +0.9
348,540 + +1.2
348,541 - +1.9
348,544 - -1.3
348,546 + -0.3
348,547 - +0.5
348,550 + +1.4
348,564 - +2.2
348,564 - +0.7
348,566 + -2.5
348,569 + +1.0
348,569 + +1.2
348,573 + -0.5
348,574 - +0.0
348,574 - -0.3
348,574 - +0.2
348,574 - -0.8
348,581 - -1.8
348,582 + -0.8
348,582 + +0.6
348,583 - +0.2
348,583 - -2.7
348,583 - -1.2
348,583 - +0.2
348,586 + -1.0
348,587 - +2.5
348,587 - +2.1
348,593 - +0.2
348,593 - -2.0
348,597 - -0.0
348,606 - +1.2
348,606 - -0.4
348,606 - -0.3
348,606 - -1.6
348,606 - +2.1
348,616 + +2.8
348,640 + +0.5
348,640 + +0.9
348,765 - +1.0
348,777 + +1.0
348,790 - +0.2
348,833 + +0.9
348,834 - +0.0
348,834 - -0.6
348,835 + +0.3
348,835 + +1.0
348,836 - +1.2
348,836 - +0.6
348,838 + +0.4
348,895 + -1.6
348,896 - -0.6
348,896 - +1.3
348,941 - +2.4
349,018 - HMPREF1078_RS16125 0.47 -1.4
349,083 - HMPREF1078_RS16125 0.81 -0.1
349,112 + -0.4
349,173 - +0.3
349,199 + -0.9
349,206 + +0.2
349,211 + -1.0
349,216 + +0.1
349,216 + -0.4
349,220 + -0.1
349,220 + -0.8
349,220 + -0.1
349,220 + -0.4
349,220 + +1.9
349,220 + -1.1
349,224 + +2.1
349,224 + -0.1
349,660 + HMPREF1078_RS16130 0.25 -0.4
349,660 + HMPREF1078_RS16130 0.25 -0.4
349,664 + HMPREF1078_RS16130 0.25 -2.4
349,666 + HMPREF1078_RS16130 0.25 -0.8
349,706 + HMPREF1078_RS16130 0.28 -2.0
349,714 + HMPREF1078_RS16130 0.28 -2.0
349,714 + HMPREF1078_RS16130 0.28 +0.2
349,723 + HMPREF1078_RS16130 0.29 +0.2
349,723 + HMPREF1078_RS16130 0.29 -1.8
349,740 + HMPREF1078_RS16130 0.30 -2.0
349,973 + HMPREF1078_RS16130 0.45 -3.0
349,973 + HMPREF1078_RS16130 0.45 +3.2
349,973 + HMPREF1078_RS16130 0.45 -4.8
349,973 + HMPREF1078_RS16130 0.45 -3.8
349,994 + HMPREF1078_RS16130 0.47 -2.4
350,007 + HMPREF1078_RS16130 0.48 -3.9
350,007 + HMPREF1078_RS16130 0.48 -2.0
350,038 + HMPREF1078_RS16130 0.50 -2.9
350,080 + HMPREF1078_RS16130 0.52 -1.4
350,087 + HMPREF1078_RS16130 0.53 -2.9
350,087 + HMPREF1078_RS16130 0.53 -1.1
350,087 + HMPREF1078_RS16130 0.53 -3.8
350,200 + HMPREF1078_RS16130 0.60 -2.4
350,200 + HMPREF1078_RS16130 0.60 -2.2
350,306 + HMPREF1078_RS16130 0.67 -3.3
350,311 + HMPREF1078_RS16130 0.68 -2.3
350,311 + HMPREF1078_RS16130 0.68 -3.0
350,321 + HMPREF1078_RS16130 0.68 -0.8
350,393 + HMPREF1078_RS16130 0.73 -0.8
350,396 + HMPREF1078_RS16130 0.73 +1.2
350,396 + HMPREF1078_RS16130 0.73 -1.8
350,585 + HMPREF1078_RS16130 0.86 -0.7
350,630 + HMPREF1078_RS16130 0.89 +0.8
350,690 + -2.1
350,720 + -1.0
350,745 + +0.3
350,745 + -1.8
350,802 + -0.8
350,802 + -1.7
350,802 + +1.8
350,812 + +0.9
350,815 + +0.4
350,822 + -2.1
350,831 + -2.7
350,831 + -3.2
350,865 + -3.5
350,865 + -3.5
350,880 + -1.2
350,880 + -1.2
350,880 + -0.3
350,887 + -2.9
350,894 + -1.7
350,894 + +0.6

Or see this region's nucleotide sequence