Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS15445 and HMPREF1078_RS15450 are separated by 11 nucleotides HMPREF1078_RS15450 and HMPREF1078_RS15455 are separated by 10 nucleotides HMPREF1078_RS15455 and HMPREF1078_RS15460 are separated by 100 nucleotides
HMPREF1078_RS15445: HMPREF1078_RS15445 - electron transport complex subunit RsxC, at 184,763 to 186,094
_RS15445
HMPREF1078_RS15450: HMPREF1078_RS15450 - Fe-S cluster domain-containing protein, at 186,106 to 187,116
_RS15450
HMPREF1078_RS15455: HMPREF1078_RS15455 - SoxR reducing system RseC family protein, at 187,127 to 187,543
_RS15455
HMPREF1078_RS15460: HMPREF1078_RS15460 - DUF3078 domain-containing protein, at 187,644 to 189,224
_RS15460
Position (kb) 186
187
188 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 186.304 kb on - strand, within HMPREF1078_RS15450 at 187.148 kb on - strand at 187.588 kb on - strand at 187.599 kb on - strand at 187.619 kb on + strand at 187.630 kb on + strand at 187.630 kb on + strand at 187.655 kb on - strand at 187.655 kb on - strand at 187.693 kb on + strand at 187.694 kb on - strand at 187.733 kb on - strand at 187.733 kb on - strand at 187.811 kb on + strand, within HMPREF1078_RS15460 at 187.834 kb on + strand, within HMPREF1078_RS15460 at 188.017 kb on + strand, within HMPREF1078_RS15460 at 188.017 kb on + strand, within HMPREF1078_RS15460 at 188.017 kb on + strand, within HMPREF1078_RS15460 at 188.017 kb on + strand, within HMPREF1078_RS15460 at 188.017 kb on + strand, within HMPREF1078_RS15460 at 188.017 kb on + strand, within HMPREF1078_RS15460 at 188.017 kb on + strand, within HMPREF1078_RS15460 at 188.018 kb on - strand, within HMPREF1078_RS15460 at 188.018 kb on - strand, within HMPREF1078_RS15460 at 188.018 kb on - strand, within HMPREF1078_RS15460 at 188.018 kb on - strand, within HMPREF1078_RS15460 at 188.018 kb on - strand, within HMPREF1078_RS15460 at 188.018 kb on - strand, within HMPREF1078_RS15460 at 188.018 kb on - strand, within HMPREF1078_RS15460 at 188.021 kb on + strand, within HMPREF1078_RS15460 at 188.021 kb on + strand, within HMPREF1078_RS15460 at 188.021 kb on + strand, within HMPREF1078_RS15460 at 188.022 kb on - strand, within HMPREF1078_RS15460 at 188.023 kb on + strand, within HMPREF1078_RS15460 at 188.023 kb on + strand, within HMPREF1078_RS15460 at 188.023 kb on + strand, within HMPREF1078_RS15460 at 188.023 kb on + strand, within HMPREF1078_RS15460 at 188.027 kb on + strand, within HMPREF1078_RS15460 at 188.027 kb on + strand, within HMPREF1078_RS15460 at 188.028 kb on - strand, within HMPREF1078_RS15460 at 188.028 kb on - strand, within HMPREF1078_RS15460 at 188.028 kb on - strand, within HMPREF1078_RS15460 at 188.028 kb on - strand, within HMPREF1078_RS15460 at 188.030 kb on - strand, within HMPREF1078_RS15460 at 188.030 kb on - strand, within HMPREF1078_RS15460 at 188.085 kb on - strand, within HMPREF1078_RS15460 at 188.104 kb on + strand, within HMPREF1078_RS15460
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day4 remove 186,304 - HMPREF1078_RS15450 0.20 -3.5 187,148 - -0.8 187,588 - +0.9 187,599 - +0.6 187,619 + +0.2 187,630 + -0.4 187,630 + -0.6 187,655 - +0.2 187,655 - -1.4 187,693 + +1.2 187,694 - -0.4 187,733 - +1.2 187,733 - +1.2 187,811 + HMPREF1078_RS15460 0.11 -0.2 187,834 + HMPREF1078_RS15460 0.12 +0.2 188,017 + HMPREF1078_RS15460 0.24 -0.4 188,017 + HMPREF1078_RS15460 0.24 -1.8 188,017 + HMPREF1078_RS15460 0.24 -1.2 188,017 + HMPREF1078_RS15460 0.24 -2.0 188,017 + HMPREF1078_RS15460 0.24 +0.2 188,017 + HMPREF1078_RS15460 0.24 -1.2 188,017 + HMPREF1078_RS15460 0.24 +0.2 188,018 - HMPREF1078_RS15460 0.24 -2.7 188,018 - HMPREF1078_RS15460 0.24 -0.8 188,018 - HMPREF1078_RS15460 0.24 -2.3 188,018 - HMPREF1078_RS15460 0.24 -1.4 188,018 - HMPREF1078_RS15460 0.24 -0.8 188,018 - HMPREF1078_RS15460 0.24 -2.2 188,018 - HMPREF1078_RS15460 0.24 -1.4 188,021 + HMPREF1078_RS15460 0.24 -2.6 188,021 + HMPREF1078_RS15460 0.24 -1.9 188,021 + HMPREF1078_RS15460 0.24 +0.2 188,022 - HMPREF1078_RS15460 0.24 -1.6 188,023 + HMPREF1078_RS15460 0.24 +1.2 188,023 + HMPREF1078_RS15460 0.24 -0.8 188,023 + HMPREF1078_RS15460 0.24 -0.8 188,023 + HMPREF1078_RS15460 0.24 -1.8 188,027 + HMPREF1078_RS15460 0.24 -1.4 188,027 + HMPREF1078_RS15460 0.24 -1.6 188,028 - HMPREF1078_RS15460 0.24 +0.2 188,028 - HMPREF1078_RS15460 0.24 -1.4 188,028 - HMPREF1078_RS15460 0.24 -3.5 188,028 - HMPREF1078_RS15460 0.24 -1.6 188,030 - HMPREF1078_RS15460 0.24 -0.7 188,030 - HMPREF1078_RS15460 0.24 -1.8 188,085 - HMPREF1078_RS15460 0.28 -1.4 188,104 + HMPREF1078_RS15460 0.29 +1.9
Or see this region's nucleotide sequence