Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS15320 and HMPREF1078_RS15325 are separated by 751 nucleotides HMPREF1078_RS15325 and HMPREF1078_RS15330 are separated by 181 nucleotides HMPREF1078_RS15330 and HMPREF1078_RS15335 are separated by 77 nucleotides
HMPREF1078_RS15320: HMPREF1078_RS15320 - tetratricopeptide repeat protein, at 149,411 to 150,946
_RS15320
HMPREF1078_RS15325: HMPREF1078_RS15325 - bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase, at 151,698 to 153,209
_RS15325
HMPREF1078_RS15330: HMPREF1078_RS15330 - tRNA-Gly, at 153,391 to 153,463
_RS15330
HMPREF1078_RS15335: HMPREF1078_RS15335 - acetylglutamate kinase, at 153,541 to 154,308
_RS15335
Position (kb) 151
152
153
154 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 150.706 kb on + strand, within HMPREF1078_RS15320 at 150.707 kb on - strand, within HMPREF1078_RS15320 at 150.707 kb on - strand, within HMPREF1078_RS15320 at 150.708 kb on + strand, within HMPREF1078_RS15320 at 150.709 kb on - strand, within HMPREF1078_RS15320 at 150.709 kb on - strand, within HMPREF1078_RS15320 at 150.744 kb on - strand, within HMPREF1078_RS15320 at 150.744 kb on - strand, within HMPREF1078_RS15320 at 150.748 kb on - strand, within HMPREF1078_RS15320 at 150.797 kb on + strand at 150.851 kb on + strand at 150.851 kb on + strand at 150.855 kb on - strand at 150.922 kb on + strand at 150.923 kb on - strand at 150.923 kb on - strand at 150.923 kb on - strand at 150.925 kb on + strand at 150.925 kb on + strand at 150.930 kb on - strand at 150.940 kb on + strand at 150.959 kb on + strand at 150.977 kb on + strand at 150.978 kb on - strand at 151.036 kb on - strand at 151.146 kb on - strand at 151.146 kb on - strand at 151.146 kb on - strand at 151.146 kb on - strand at 151.191 kb on + strand at 151.191 kb on + strand at 151.191 kb on + strand at 151.192 kb on - strand at 151.402 kb on + strand at 151.402 kb on + strand at 151.413 kb on + strand at 151.433 kb on + strand at 151.454 kb on - strand at 151.464 kb on - strand at 151.493 kb on - strand at 151.578 kb on + strand at 151.638 kb on + strand at 151.658 kb on + strand at 151.659 kb on - strand at 151.686 kb on - strand at 151.731 kb on - strand at 151.839 kb on + strand at 151.860 kb on + strand, within HMPREF1078_RS15325 at 151.861 kb on - strand, within HMPREF1078_RS15325 at 151.868 kb on + strand, within HMPREF1078_RS15325 at 151.930 kb on + strand, within HMPREF1078_RS15325 at 151.931 kb on - strand, within HMPREF1078_RS15325 at 151.931 kb on - strand, within HMPREF1078_RS15325 at 151.961 kb on + strand, within HMPREF1078_RS15325 at 151.963 kb on + strand, within HMPREF1078_RS15325 at 151.963 kb on + strand, within HMPREF1078_RS15325 at 152.039 kb on + strand, within HMPREF1078_RS15325 at 152.039 kb on - strand, within HMPREF1078_RS15325 at 152.115 kb on + strand, within HMPREF1078_RS15325 at 152.123 kb on + strand, within HMPREF1078_RS15325 at 152.179 kb on - strand, within HMPREF1078_RS15325 at 152.188 kb on - strand, within HMPREF1078_RS15325 at 152.391 kb on - strand, within HMPREF1078_RS15325 at 152.391 kb on - strand, within HMPREF1078_RS15325 at 152.409 kb on + strand, within HMPREF1078_RS15325 at 152.474 kb on + strand, within HMPREF1078_RS15325 at 152.513 kb on + strand, within HMPREF1078_RS15325 at 152.513 kb on + strand, within HMPREF1078_RS15325 at 152.560 kb on - strand, within HMPREF1078_RS15325 at 152.587 kb on - strand, within HMPREF1078_RS15325 at 152.765 kb on + strand, within HMPREF1078_RS15325 at 152.765 kb on + strand, within HMPREF1078_RS15325 at 152.767 kb on + strand, within HMPREF1078_RS15325 at 152.767 kb on + strand, within HMPREF1078_RS15325 at 152.768 kb on - strand, within HMPREF1078_RS15325 at 152.768 kb on - strand, within HMPREF1078_RS15325 at 152.768 kb on - strand, within HMPREF1078_RS15325 at 152.773 kb on - strand, within HMPREF1078_RS15325 at 153.054 kb on + strand, within HMPREF1078_RS15325 at 153.054 kb on + strand, within HMPREF1078_RS15325 at 153.063 kb on - strand at 153.102 kb on - strand at 153.106 kb on - strand at 153.124 kb on - strand at 153.161 kb on + strand at 153.163 kb on + strand at 153.164 kb on - strand at 153.164 kb on - strand at 153.168 kb on - strand at 153.185 kb on + strand at 153.186 kb on - strand at 153.199 kb on - strand at 153.199 kb on - strand at 153.204 kb on + strand at 153.209 kb on + strand at 153.210 kb on - strand at 153.210 kb on - strand at 153.214 kb on - strand at 153.214 kb on - strand at 153.241 kb on - strand at 153.248 kb on + strand at 153.249 kb on - strand at 153.257 kb on + strand at 153.287 kb on - strand at 153.320 kb on - strand at 153.443 kb on + strand, within HMPREF1078_RS15330 at 153.458 kb on + strand at 153.534 kb on + strand at 153.536 kb on + strand at 153.537 kb on - strand at 153.537 kb on - strand at 153.552 kb on - strand at 153.630 kb on - strand, within HMPREF1078_RS15335 at 153.630 kb on - strand, within HMPREF1078_RS15335 at 153.639 kb on + strand, within HMPREF1078_RS15335 at 153.640 kb on - strand, within HMPREF1078_RS15335 at 153.757 kb on - strand, within HMPREF1078_RS15335 at 153.757 kb on - strand, within HMPREF1078_RS15335 at 153.812 kb on + strand, within HMPREF1078_RS15335 at 153.817 kb on - strand, within HMPREF1078_RS15335 at 153.893 kb on - strand, within HMPREF1078_RS15335 at 153.893 kb on - strand, within HMPREF1078_RS15335 at 153.957 kb on + strand, within HMPREF1078_RS15335 at 154.002 kb on + strand, within HMPREF1078_RS15335 at 154.002 kb on + strand, within HMPREF1078_RS15335 at 154.003 kb on - strand, within HMPREF1078_RS15335 at 154.003 kb on - strand, within HMPREF1078_RS15335 at 154.003 kb on - strand, within HMPREF1078_RS15335 at 154.011 kb on + strand, within HMPREF1078_RS15335 at 154.145 kb on + strand, within HMPREF1078_RS15335 at 154.153 kb on - strand, within HMPREF1078_RS15335 at 154.169 kb on - strand, within HMPREF1078_RS15335 at 154.207 kb on - strand, within HMPREF1078_RS15335
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day4 remove 150,706 + HMPREF1078_RS15320 0.84 -1.6 150,707 - HMPREF1078_RS15320 0.84 -1.4 150,707 - HMPREF1078_RS15320 0.84 +0.9 150,708 + HMPREF1078_RS15320 0.84 +1.2 150,709 - HMPREF1078_RS15320 0.85 -2.2 150,709 - HMPREF1078_RS15320 0.85 +2.3 150,744 - HMPREF1078_RS15320 0.87 -1.6 150,744 - HMPREF1078_RS15320 0.87 -0.5 150,748 - HMPREF1078_RS15320 0.87 -2.5 150,797 + -0.8 150,851 + -0.2 150,851 + +1.2 150,855 - -1.2 150,922 + +1.7 150,923 - -0.5 150,923 - +0.3 150,923 - -1.3 150,925 + -0.4 150,925 + -2.3 150,930 - -2.6 150,940 + -1.6 150,959 + -0.2 150,977 + +1.3 150,978 - -0.3 151,036 - +1.7 151,146 - -0.3 151,146 - +1.2 151,146 - -0.3 151,146 - +1.0 151,191 + -0.4 151,191 + +0.7 151,191 + -0.5 151,192 - -1.2 151,402 + -1.8 151,402 + -0.1 151,413 + -0.4 151,433 + -0.4 151,454 - -0.3 151,464 - -0.6 151,493 - +0.2 151,578 + +0.4 151,638 + -3.2 151,658 + -0.4 151,659 - -1.6 151,686 - -0.7 151,731 - -1.6 151,839 + -2.3 151,860 + HMPREF1078_RS15325 0.11 -3.1 151,861 - HMPREF1078_RS15325 0.11 +1.2 151,868 + HMPREF1078_RS15325 0.11 -3.4 151,930 + HMPREF1078_RS15325 0.15 -2.6 151,931 - HMPREF1078_RS15325 0.15 +0.2 151,931 - HMPREF1078_RS15325 0.15 -2.5 151,961 + HMPREF1078_RS15325 0.17 -0.4 151,963 + HMPREF1078_RS15325 0.18 -1.6 151,963 + HMPREF1078_RS15325 0.18 -1.8 152,039 + HMPREF1078_RS15325 0.23 -0.8 152,039 - HMPREF1078_RS15325 0.23 -1.8 152,115 + HMPREF1078_RS15325 0.28 +1.2 152,123 + HMPREF1078_RS15325 0.28 +0.2 152,179 - HMPREF1078_RS15325 0.32 -2.6 152,188 - HMPREF1078_RS15325 0.32 -1.6 152,391 - HMPREF1078_RS15325 0.46 -0.4 152,391 - HMPREF1078_RS15325 0.46 -1.2 152,409 + HMPREF1078_RS15325 0.47 -2.5 152,474 + HMPREF1078_RS15325 0.51 -3.2 152,513 + HMPREF1078_RS15325 0.54 -2.3 152,513 + HMPREF1078_RS15325 0.54 -1.6 152,560 - HMPREF1078_RS15325 0.57 -3.2 152,587 - HMPREF1078_RS15325 0.59 -1.4 152,765 + HMPREF1078_RS15325 0.71 -3.7 152,765 + HMPREF1078_RS15325 0.71 +0.2 152,767 + HMPREF1078_RS15325 0.71 -3.3 152,767 + HMPREF1078_RS15325 0.71 -1.6 152,768 - HMPREF1078_RS15325 0.71 -2.7 152,768 - HMPREF1078_RS15325 0.71 -2.3 152,768 - HMPREF1078_RS15325 0.71 -1.4 152,773 - HMPREF1078_RS15325 0.71 -2.9 153,054 + HMPREF1078_RS15325 0.90 +1.2 153,054 + HMPREF1078_RS15325 0.90 -1.4 153,063 - +1.2 153,102 - -5.1 153,106 - +0.2 153,124 - -1.2 153,161 + -2.5 153,163 + -2.0 153,164 - -1.6 153,164 - -2.0 153,168 - -0.4 153,185 + -1.6 153,186 - -2.3 153,199 - -3.6 153,199 - +1.2 153,204 + -2.5 153,209 + -2.9 153,210 - -0.9 153,210 - -1.4 153,214 - -1.6 153,214 - +1.2 153,241 - +1.2 153,248 + -1.2 153,249 - -2.2 153,257 + -1.4 153,287 - -2.4 153,320 - +0.2 153,443 + HMPREF1078_RS15330 0.71 -0.0 153,458 + -0.6 153,534 + +0.2 153,536 + +1.4 153,537 - -2.6 153,537 - -2.0 153,552 - -3.1 153,630 - HMPREF1078_RS15335 0.12 -1.4 153,630 - HMPREF1078_RS15335 0.12 -1.8 153,639 + HMPREF1078_RS15335 0.13 -0.4 153,640 - HMPREF1078_RS15335 0.13 -1.8 153,757 - HMPREF1078_RS15335 0.28 +0.6 153,757 - HMPREF1078_RS15335 0.28 -2.0 153,812 + HMPREF1078_RS15335 0.35 -2.6 153,817 - HMPREF1078_RS15335 0.36 -0.5 153,893 - HMPREF1078_RS15335 0.46 -0.6 153,893 - HMPREF1078_RS15335 0.46 -2.5 153,957 + HMPREF1078_RS15335 0.54 -2.3 154,002 + HMPREF1078_RS15335 0.60 -0.4 154,002 + HMPREF1078_RS15335 0.60 -2.6 154,003 - HMPREF1078_RS15335 0.60 -0.8 154,003 - HMPREF1078_RS15335 0.60 -4.0 154,003 - HMPREF1078_RS15335 0.60 -1.4 154,011 + HMPREF1078_RS15335 0.61 -2.2 154,145 + HMPREF1078_RS15335 0.79 -0.8 154,153 - HMPREF1078_RS15335 0.80 -2.6 154,169 - HMPREF1078_RS15335 0.82 -1.4 154,207 - HMPREF1078_RS15335 0.87 -2.5
Or see this region's nucleotide sequence