Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS15315

Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day4
147,053	+		HMPREF1078_RS15310	0.36	-0.2
147,053	+		HMPREF1078_RS15310	0.36	-1.2
147,054	-		HMPREF1078_RS15310	0.36	-1.6
147,054	-		HMPREF1078_RS15310	0.36	-1.2
147,054	-		HMPREF1078_RS15310	0.36	-1.3
147,056	-		HMPREF1078_RS15310	0.36	-2.6
147,066	+		HMPREF1078_RS15310	0.37	-0.7
147,067	-		HMPREF1078_RS15310	0.37	-2.2
147,084	+		HMPREF1078_RS15310	0.38	-1.6
147,084	+		HMPREF1078_RS15310	0.38	+0.2
147,122	+		HMPREF1078_RS15310	0.41	-2.0
147,144	+		HMPREF1078_RS15310	0.42	-0.4
147,151	+		HMPREF1078_RS15310	0.43	-1.5
147,151	+		HMPREF1078_RS15310	0.43	-2.2
147,152	-		HMPREF1078_RS15310	0.43	-0.4
147,166	-		HMPREF1078_RS15310	0.43	-3.6
147,254	+		HMPREF1078_RS15310	0.49	-2.9
147,254	+		HMPREF1078_RS15310	0.49	-1.0
147,307	-		HMPREF1078_RS15310	0.53	-1.3
147,318	+		HMPREF1078_RS15310	0.53	-0.6
147,318	+		HMPREF1078_RS15310	0.53	-2.5
147,318	+		HMPREF1078_RS15310	0.53	-0.2
147,319	-		HMPREF1078_RS15310	0.54	-1.4
147,319	-		HMPREF1078_RS15310	0.54	-0.4
147,319	-		HMPREF1078_RS15310	0.54	-0.8
147,319	-		HMPREF1078_RS15310	0.54	-1.4
147,319	-		HMPREF1078_RS15310	0.54	+0.7
147,319	-		HMPREF1078_RS15310	0.54	-1.3
147,324	-		HMPREF1078_RS15310	0.54	-0.4
147,324	-		HMPREF1078_RS15310	0.54	+1.2
147,433	+		HMPREF1078_RS15310	0.61	-2.5
147,436	+		HMPREF1078_RS15310	0.61	-0.1
147,436	+		HMPREF1078_RS15310	0.61	-2.1
147,437	-		HMPREF1078_RS15310	0.61	+1.2
147,437	-		HMPREF1078_RS15310	0.61	-0.3
147,440	+		HMPREF1078_RS15310	0.61	-0.5
147,441	-		HMPREF1078_RS15310	0.61	-2.5
147,441	-		HMPREF1078_RS15310	0.61	-1.8
147,441	-		HMPREF1078_RS15310	0.61	-2.5
147,450	+		HMPREF1078_RS15310	0.62	-1.3
147,450	+		HMPREF1078_RS15310	0.62	-1.8
147,490	+		HMPREF1078_RS15310	0.65	-2.3
147,490	+		HMPREF1078_RS15310	0.65	-2.6
147,529	+		HMPREF1078_RS15310	0.67	+0.2
147,530	-		HMPREF1078_RS15310	0.67	-2.7
147,544	-		HMPREF1078_RS15310	0.68	-0.8
147,554	+		HMPREF1078_RS15310	0.69	-1.5
147,555	-		HMPREF1078_RS15310	0.69	-3.0
147,574	-		HMPREF1078_RS15310	0.70	-0.7
147,589	+		HMPREF1078_RS15310	0.71	-1.2
147,589	+		HMPREF1078_RS15310	0.71	-1.8
147,590	-		HMPREF1078_RS15310	0.71	-0.5
147,590	-		HMPREF1078_RS15310	0.71	-0.2
147,590	-		HMPREF1078_RS15310	0.71	-0.5
147,596	+		HMPREF1078_RS15310	0.72	-2.1
147,596	+		HMPREF1078_RS15310	0.72	-0.8
147,597	-		HMPREF1078_RS15310	0.72	-1.5
147,625	+		HMPREF1078_RS15310	0.74	-1.7
147,626	-		HMPREF1078_RS15310	0.74	-1.4
147,642	+		HMPREF1078_RS15310	0.75	-1.2
147,643	-		HMPREF1078_RS15310	0.75	-3.3
147,643	-		HMPREF1078_RS15310	0.75	+0.5
147,643	-		HMPREF1078_RS15310	0.75	-0.1
147,657	+		HMPREF1078_RS15310	0.76	+1.0
147,657	+		HMPREF1078_RS15310	0.76	-1.8
147,657	+		HMPREF1078_RS15310	0.76	-0.0
147,657	+		HMPREF1078_RS15310	0.76	-0.8
147,658	-		HMPREF1078_RS15310	0.76	-2.0
147,678	+		HMPREF1078_RS15310	0.77	-0.3
147,720	-		HMPREF1078_RS15310	0.80	-3.0
147,734	-		HMPREF1078_RS15310	0.81	-1.8
147,769	+		HMPREF1078_RS15310	0.83	-1.8
147,770	-		HMPREF1078_RS15310	0.83	-0.8
147,824	+		HMPREF1078_RS15310	0.87	+0.4
147,831	+		HMPREF1078_RS15310	0.87	-1.2
147,832	-		HMPREF1078_RS15310	0.87	-1.5
147,832	-		HMPREF1078_RS15310	0.87	-1.7
147,832	-		HMPREF1078_RS15310	0.87	-1.8
147,864	+		HMPREF1078_RS15310	0.89	-0.8
147,883	+				-2.7
147,890	+				-1.9
147,891	-				-0.2
147,891	-				-0.4
147,899	+				+1.0
147,900	-				-0.6
147,958	+				-1.2
147,959	-				+0.2
147,959	-				-0.7
147,959	-				-0.6
148,000	+				+1.2
148,000	+				-0.6
148,000	+				-1.9
148,001	-				-2.0
148,001	-				-2.8
148,001	-				-2.2
148,002	+				-1.8
148,002	+				+1.2
148,002	+				-2.8
148,028	+				+0.3
148,034	+				+0.2
148,035	-				-2.0
148,042	+				-3.1
148,043	-				+0.2
148,092	+				-0.4
148,114	+				-1.3
148,163	-		HMPREF1078_RS15315	0.11	-1.6
148,230	-		HMPREF1078_RS15315	0.17	-2.2
148,234	+		HMPREF1078_RS15315	0.17	-0.4
148,234	+		HMPREF1078_RS15315	0.17	+1.2
148,234	+		HMPREF1078_RS15315	0.17	-3.1
148,234	+		HMPREF1078_RS15315	0.17	+1.2
148,235	-		HMPREF1078_RS15315	0.17	-2.4
148,235	-		HMPREF1078_RS15315	0.17	-0.4
148,236	+		HMPREF1078_RS15315	0.18	-1.2
148,236	+		HMPREF1078_RS15315	0.18	-1.2
148,236	+		HMPREF1078_RS15315	0.18	-1.2
148,236	+		HMPREF1078_RS15315	0.18	-1.8
148,236	+		HMPREF1078_RS15315	0.18	-1.6
148,237	-		HMPREF1078_RS15315	0.18	-1.8
148,237	-		HMPREF1078_RS15315	0.18	-1.4
148,238	+		HMPREF1078_RS15315	0.18	-1.4
148,238	+		HMPREF1078_RS15315	0.18	-1.2
148,238	+		HMPREF1078_RS15315	0.18	-0.8
148,241	-		HMPREF1078_RS15315	0.18	-2.3
148,287	-		HMPREF1078_RS15315	0.22	-1.6
148,313	+		HMPREF1078_RS15315	0.25	-1.2
148,321	+		HMPREF1078_RS15315	0.25	-2.3
148,321	+		HMPREF1078_RS15315	0.25	-3.5
148,321	+		HMPREF1078_RS15315	0.25	-0.2
148,321	+		HMPREF1078_RS15315	0.25	+0.2
148,322	+		HMPREF1078_RS15315	0.26	-1.6
148,324	-		HMPREF1078_RS15315	0.26	+1.2
148,324	-		HMPREF1078_RS15315	0.26	-1.4
148,355	+		HMPREF1078_RS15315	0.29	+0.2
148,356	-		HMPREF1078_RS15315	0.29	-2.6
148,356	-		HMPREF1078_RS15315	0.29	-1.2
148,388	+		HMPREF1078_RS15315	0.32	-1.6
148,388	+		HMPREF1078_RS15315	0.32	-0.4
148,389	-		HMPREF1078_RS15315	0.32	-1.6
148,397	-		HMPREF1078_RS15315	0.33	-1.4
148,415	+		HMPREF1078_RS15315	0.34	-3.5
148,415	+		HMPREF1078_RS15315	0.34	-3.7
148,416	-		HMPREF1078_RS15315	0.34	-1.8
148,420	+		HMPREF1078_RS15315	0.35	-2.5
148,420	+		HMPREF1078_RS15315	0.35	-2.0
148,539	-		HMPREF1078_RS15315	0.46	-0.6
148,558	+		HMPREF1078_RS15315	0.48	-3.4
148,559	-		HMPREF1078_RS15315	0.48	-1.6
148,571	-		HMPREF1078_RS15315	0.49	-1.2
148,591	-		HMPREF1078_RS15315	0.51	-2.3
148,591	-		HMPREF1078_RS15315	0.51	-1.8
148,627	+		HMPREF1078_RS15315	0.54	-3.1
148,627	+		HMPREF1078_RS15315	0.54	-3.0
148,732	+		HMPREF1078_RS15315	0.64	-1.2
148,732	+		HMPREF1078_RS15315	0.64	-2.6
148,733	-		HMPREF1078_RS15315	0.64	-1.1
148,782	+		HMPREF1078_RS15315	0.69	-1.6
148,783	-		HMPREF1078_RS15315	0.69	-0.8
148,804	+		HMPREF1078_RS15315	0.71	-2.6
148,823	-		HMPREF1078_RS15315	0.72	-2.2
148,823	-		HMPREF1078_RS15315	0.72	-1.8
148,869	-		HMPREF1078_RS15315	0.77	-2.7
148,869	-		HMPREF1078_RS15315	0.77	-2.3
148,869	-		HMPREF1078_RS15315	0.77	+0.4
148,878	+		HMPREF1078_RS15315	0.78	-2.0
148,885	+		HMPREF1078_RS15315	0.78	-3.1
148,885	+		HMPREF1078_RS15315	0.78	-3.1
148,885	+		HMPREF1078_RS15315	0.78	-1.6
148,885	+		HMPREF1078_RS15315	0.78	-2.2
148,885	+		HMPREF1078_RS15315	0.78	-2.5
148,886	-		HMPREF1078_RS15315	0.78	-3.2
148,886	-		HMPREF1078_RS15315	0.78	-1.6
148,886	-		HMPREF1078_RS15315	0.78	-1.2
148,886	-		HMPREF1078_RS15315	0.78	-2.3
148,886	-		HMPREF1078_RS15315	0.78	-2.6
148,886	-		HMPREF1078_RS15315	0.78	-2.0
148,917	+		HMPREF1078_RS15315	0.81	-2.9
148,930	-		HMPREF1078_RS15315	0.82	-1.4
148,933	+		HMPREF1078_RS15315	0.83	-2.2
148,935	+		HMPREF1078_RS15315	0.83	+1.2
148,936	-		HMPREF1078_RS15315	0.83	-0.8
148,939	-		HMPREF1078_RS15315	0.83	-2.7
148,958	+		HMPREF1078_RS15315	0.85	-2.6
148,958	+		HMPREF1078_RS15315	0.85	-1.8
148,966	+		HMPREF1078_RS15315	0.86	-1.8
148,996	+		HMPREF1078_RS15315	0.89	-2.2
149,007	+		HMPREF1078_RS15315	0.90	-1.2
149,007	+		HMPREF1078_RS15315	0.90	-1.6
149,008	-		HMPREF1078_RS15315	0.90	+1.2
149,012	+				+0.2
149,013	-				-0.8
149,013	-				-1.6
149,015	-				-0.2
149,048	+				-2.4
149,075	+				-2.8
149,096	+				+1.2
149,096	+				-0.8
149,097	-				-2.6
149,098	+				-2.7
149,098	+				-2.8
149,099	-				-3.3
149,117	-				+0.1
149,121	+				-1.4
149,122	-				-1.4
149,143	-				+1.6
149,143	-				-1.6
149,152	+				+0.2
149,153	-				-1.8
149,175	+				+0.2
149,210	-				+1.2
149,211	+				-1.8
149,211	+				-0.4
149,212	-				+3.8
149,227	+				+0.3
149,306	+				+0.4
149,306	+				-1.2
149,306	+				+1.2
149,307	-				+0.8
149,307	-				-1.6
149,364	-				-0.1
149,364	-				+0.2
149,374	+				-1.2
149,374	+				-0.2
149,404	+				-0.4
149,473	+				-0.9
149,473	+				+2.8
149,515	+				-0.4
149,516	-				-0.4
149,516	-				+1.8
149,516	-				+0.2
149,522	-				-1.2
149,546	+				+0.6
149,546	+				+0.2
149,547	-				+0.4
149,561	+				+0.2
149,562	-				-0.4
149,572	+		HMPREF1078_RS15320	0.10	-1.6
149,572	+		HMPREF1078_RS15320	0.10	-1.6
149,572	+		HMPREF1078_RS15320	0.10	-0.2
149,572	+		HMPREF1078_RS15320	0.10	-0.1
149,573	-		HMPREF1078_RS15320	0.11	+0.7
149,573	-		HMPREF1078_RS15320	0.11	+0.2
149,576	+		HMPREF1078_RS15320	0.11	-1.6
149,585	+		HMPREF1078_RS15320	0.11	-3.3
149,687	+		HMPREF1078_RS15320	0.18	+0.3
149,688	-		HMPREF1078_RS15320	0.18	+1.5
149,688	-		HMPREF1078_RS15320	0.18	-1.0
149,717	+		HMPREF1078_RS15320	0.20	-0.8
149,717	+		HMPREF1078_RS15320	0.20	-1.6
149,718	-		HMPREF1078_RS15320	0.20	-1.0
149,802	-		HMPREF1078_RS15320	0.25	-0.9
149,817	+		HMPREF1078_RS15320	0.26	+0.0
149,818	-		HMPREF1078_RS15320	0.26	-0.7
149,874	-		HMPREF1078_RS15320	0.30	-0.1
149,903	+		HMPREF1078_RS15320	0.32	-0.3
149,904	-		HMPREF1078_RS15320	0.32	+0.4
149,904	-		HMPREF1078_RS15320	0.32	+0.4
149,907	+		HMPREF1078_RS15320	0.32	-2.6
149,907	+		HMPREF1078_RS15320	0.32	-0.3
149,908	-		HMPREF1078_RS15320	0.32	-0.8
149,925	+		HMPREF1078_RS15320	0.33	-1.3
150,030	+		HMPREF1078_RS15320	0.40	-0.5
150,070	+		HMPREF1078_RS15320	0.43	+1.5
150,106	+		HMPREF1078_RS15320	0.45	-0.2
150,106	+		HMPREF1078_RS15320	0.45	-2.7
150,107	-		HMPREF1078_RS15320	0.45	+0.0
150,116	+		HMPREF1078_RS15320	0.46	-0.4