Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS15250 and HMPREF1078_RS15255 are separated by 11 nucleotides HMPREF1078_RS15255 and HMPREF1078_RS15260 are separated by 15 nucleotides HMPREF1078_RS15260 and HMPREF1078_RS15265 are separated by 5 nucleotides
HMPREF1078_RS15250: HMPREF1078_RS15250 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase, at 135,021 to 136,325
_RS15250
HMPREF1078_RS15255: HMPREF1078_RS15255 - ribosome maturation factor RimM, at 136,337 to 136,858
_RS15255
HMPREF1078_RS15260: HMPREF1078_RS15260 - M23 family metallopeptidase, at 136,874 to 137,746
_RS15260
HMPREF1078_RS15265: HMPREF1078_RS15265 - 1-deoxy-D-xylulose-5-phosphate reductoisomerase, at 137,752 to 138,903
_RS15265
Position (kb) 136
137 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 136.313 kb on + strand at 136.453 kb on + strand, within HMPREF1078_RS15255 at 136.453 kb on + strand, within HMPREF1078_RS15255 at 136.453 kb on + strand, within HMPREF1078_RS15255 at 136.456 kb on + strand, within HMPREF1078_RS15255 at 136.456 kb on + strand, within HMPREF1078_RS15255 at 136.456 kb on + strand, within HMPREF1078_RS15255 at 136.456 kb on + strand, within HMPREF1078_RS15255 at 136.456 kb on + strand, within HMPREF1078_RS15255 at 136.456 kb on + strand, within HMPREF1078_RS15255 at 136.510 kb on + strand, within HMPREF1078_RS15255 at 136.510 kb on + strand, within HMPREF1078_RS15255 at 136.636 kb on + strand, within HMPREF1078_RS15255 at 136.671 kb on + strand, within HMPREF1078_RS15255 at 136.671 kb on + strand, within HMPREF1078_RS15255 at 136.702 kb on + strand, within HMPREF1078_RS15255 at 136.813 kb on + strand at 136.869 kb on + strand at 136.924 kb on + strand at 136.934 kb on + strand at 136.974 kb on + strand, within HMPREF1078_RS15260 at 136.974 kb on + strand, within HMPREF1078_RS15260 at 137.056 kb on + strand, within HMPREF1078_RS15260 at 137.172 kb on + strand, within HMPREF1078_RS15260 at 137.179 kb on + strand, within HMPREF1078_RS15260 at 137.191 kb on + strand, within HMPREF1078_RS15260 at 137.400 kb on + strand, within HMPREF1078_RS15260 at 137.400 kb on + strand, within HMPREF1078_RS15260 at 137.400 kb on + strand, within HMPREF1078_RS15260 at 137.423 kb on + strand, within HMPREF1078_RS15260 at 137.425 kb on + strand, within HMPREF1078_RS15260 at 137.444 kb on + strand, within HMPREF1078_RS15260 at 137.557 kb on + strand, within HMPREF1078_RS15260 at 137.581 kb on + strand, within HMPREF1078_RS15260 at 137.581 kb on + strand, within HMPREF1078_RS15260 at 137.581 kb on + strand, within HMPREF1078_RS15260 at 137.587 kb on + strand, within HMPREF1078_RS15260 at 137.649 kb on + strand, within HMPREF1078_RS15260 at 137.656 kb on + strand, within HMPREF1078_RS15260 at 137.702 kb on + strand at 137.732 kb on + strand at 137.732 kb on + strand at 137.732 kb on + strand at 137.734 kb on + strand at 137.736 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day4 remove 136,313 + -3.3 136,453 + HMPREF1078_RS15255 0.22 -1.4 136,453 + HMPREF1078_RS15255 0.22 -3.6 136,453 + HMPREF1078_RS15255 0.22 -4.0 136,456 + HMPREF1078_RS15255 0.23 -2.0 136,456 + HMPREF1078_RS15255 0.23 -2.3 136,456 + HMPREF1078_RS15255 0.23 -2.2 136,456 + HMPREF1078_RS15255 0.23 -4.0 136,456 + HMPREF1078_RS15255 0.23 -3.5 136,456 + HMPREF1078_RS15255 0.23 -3.9 136,510 + HMPREF1078_RS15255 0.33 -4.2 136,510 + HMPREF1078_RS15255 0.33 -4.0 136,636 + HMPREF1078_RS15255 0.57 -0.6 136,671 + HMPREF1078_RS15255 0.64 -4.5 136,671 + HMPREF1078_RS15255 0.64 -2.7 136,702 + HMPREF1078_RS15255 0.70 -1.2 136,813 + -2.4 136,869 + +0.8 136,924 + -1.8 136,934 + -0.2 136,974 + HMPREF1078_RS15260 0.11 +0.5 136,974 + HMPREF1078_RS15260 0.11 -0.8 137,056 + HMPREF1078_RS15260 0.21 -1.0 137,172 + HMPREF1078_RS15260 0.34 -2.2 137,179 + HMPREF1078_RS15260 0.35 -1.2 137,191 + HMPREF1078_RS15260 0.36 -1.3 137,400 + HMPREF1078_RS15260 0.60 +0.2 137,400 + HMPREF1078_RS15260 0.60 -1.1 137,400 + HMPREF1078_RS15260 0.60 +1.2 137,423 + HMPREF1078_RS15260 0.63 +0.3 137,425 + HMPREF1078_RS15260 0.63 +0.9 137,444 + HMPREF1078_RS15260 0.65 +1.2 137,557 + HMPREF1078_RS15260 0.78 -0.3 137,581 + HMPREF1078_RS15260 0.81 -2.0 137,581 + HMPREF1078_RS15260 0.81 -1.4 137,581 + HMPREF1078_RS15260 0.81 -1.2 137,587 + HMPREF1078_RS15260 0.82 -0.6 137,649 + HMPREF1078_RS15260 0.89 +0.1 137,656 + HMPREF1078_RS15260 0.90 -1.6 137,702 + -0.8 137,732 + -0.7 137,732 + -0.1 137,732 + -1.0 137,734 + +0.2 137,736 + -2.7
Or see this region's nucleotide sequence