Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS14945

Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1078_RS14940 and HMPREF1078_RS14945 are separated by 31 nucleotidesHMPREF1078_RS14945 and HMPREF1078_RS14950 are separated by 12 nucleotidesHMPREF1078_RS14950 and HMPREF1078_RS14955 are separated by 9 nucleotides HMPREF1078_RS14940: HMPREF1078_RS14940 - hypothetical protein, at 38,774 to 39,529 _RS14940 HMPREF1078_RS14945: HMPREF1078_RS14945 - DUF1282 family protein, at 39,561 to 40,127 _RS14945 HMPREF1078_RS14950: HMPREF1078_RS14950 - SsrA-binding protein, at 40,140 to 40,601 _RS14950 HMPREF1078_RS14955: HMPREF1078_RS14955 - methionine synthase, at 40,611 to 44,306 _RS14955 Position (kb) 39 40 41Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 38.561 kb on + strandat 38.562 kb on - strandat 38.565 kb on + strandat 38.565 kb on + strandat 38.565 kb on + strandat 38.566 kb on - strandat 38.566 kb on - strandat 38.566 kb on - strandat 38.596 kb on + strandat 38.597 kb on - strandat 38.745 kb on + strandat 38.745 kb on + strandat 38.750 kb on - strandat 38.787 kb on + strandat 38.787 kb on + strandat 38.790 kb on + strandat 38.790 kb on + strandat 38.790 kb on + strandat 38.790 kb on + strandat 38.790 kb on + strandat 38.790 kb on + strandat 38.792 kb on + strandat 38.792 kb on + strandat 38.880 kb on + strand, within HMPREF1078_RS14940at 38.915 kb on + strand, within HMPREF1078_RS14940at 38.915 kb on + strand, within HMPREF1078_RS14940at 38.931 kb on + strand, within HMPREF1078_RS14940at 38.931 kb on + strand, within HMPREF1078_RS14940at 38.983 kb on + strand, within HMPREF1078_RS14940at 38.996 kb on + strand, within HMPREF1078_RS14940at 38.996 kb on + strand, within HMPREF1078_RS14940at 39.025 kb on + strand, within HMPREF1078_RS14940at 39.044 kb on - strand, within HMPREF1078_RS14940at 39.052 kb on + strand, within HMPREF1078_RS14940at 39.053 kb on - strand, within HMPREF1078_RS14940at 39.053 kb on - strand, within HMPREF1078_RS14940at 39.064 kb on + strand, within HMPREF1078_RS14940at 39.064 kb on + strand, within HMPREF1078_RS14940at 39.069 kb on - strand, within HMPREF1078_RS14940at 39.076 kb on + strand, within HMPREF1078_RS14940at 39.107 kb on + strand, within HMPREF1078_RS14940at 39.107 kb on + strand, within HMPREF1078_RS14940at 39.109 kb on + strand, within HMPREF1078_RS14940at 39.112 kb on + strand, within HMPREF1078_RS14940at 39.112 kb on + strand, within HMPREF1078_RS14940at 39.124 kb on + strand, within HMPREF1078_RS14940at 39.130 kb on + strand, within HMPREF1078_RS14940at 39.182 kb on + strand, within HMPREF1078_RS14940at 39.182 kb on + strand, within HMPREF1078_RS14940at 39.184 kb on + strand, within HMPREF1078_RS14940at 39.292 kb on + strand, within HMPREF1078_RS14940at 39.292 kb on + strand, within HMPREF1078_RS14940at 39.358 kb on + strand, within HMPREF1078_RS14940at 39.359 kb on - strand, within HMPREF1078_RS14940at 39.436 kb on + strand, within HMPREF1078_RS14940at 39.436 kb on + strand, within HMPREF1078_RS14940at 39.440 kb on + strand, within HMPREF1078_RS14940at 39.440 kb on + strand, within HMPREF1078_RS14940at 39.440 kb on + strand, within HMPREF1078_RS14940at 39.446 kb on + strand, within HMPREF1078_RS14940at 39.499 kb on + strandat 39.540 kb on - strandat 39.566 kb on + strandat 39.566 kb on + strandat 39.589 kb on + strandat 39.778 kb on + strand, within HMPREF1078_RS14945at 39.931 kb on + strand, within HMPREF1078_RS14945at 39.931 kb on + strand, within HMPREF1078_RS14945at 39.958 kb on + strand, within HMPREF1078_RS14945at 39.967 kb on + strand, within HMPREF1078_RS14945at 39.969 kb on + strand, within HMPREF1078_RS14945at 39.969 kb on + strand, within HMPREF1078_RS14945at 39.969 kb on + strand, within HMPREF1078_RS14945at 39.971 kb on + strand, within HMPREF1078_RS14945at 39.971 kb on + strand, within HMPREF1078_RS14945at 40.005 kb on + strand, within HMPREF1078_RS14945at 40.005 kb on + strand, within HMPREF1078_RS14945at 40.005 kb on + strand, within HMPREF1078_RS14945at 40.005 kb on + strand, within HMPREF1078_RS14945at 40.005 kb on + strand, within HMPREF1078_RS14945at 40.007 kb on + strand, within HMPREF1078_RS14945at 40.007 kb on + strand, within HMPREF1078_RS14945at 40.128 kb on + strandat 40.128 kb on + strandat 40.160 kb on + strandat 40.165 kb on + strandat 40.165 kb on + strandat 40.328 kb on + strand, within HMPREF1078_RS14950at 40.332 kb on + strand, within HMPREF1078_RS14950at 40.332 kb on + strand, within HMPREF1078_RS14950at 40.332 kb on + strand, within HMPREF1078_RS14950at 40.332 kb on + strand, within HMPREF1078_RS14950at 40.332 kb on + strand, within HMPREF1078_RS14950at 40.344 kb on + strand, within HMPREF1078_RS14950at 40.359 kb on + strand, within HMPREF1078_RS14950at 40.360 kb on - strand, within HMPREF1078_RS14950at 40.442 kb on + strand, within HMPREF1078_RS14950at 40.616 kb on + strandat 40.695 kb on - strandat 40.760 kb on + strandat 40.770 kb on + strandat 40.772 kb on - strandat 40.775 kb on + strandat 40.776 kb on - strandat 40.776 kb on - strandat 40.815 kb on + strandat 40.816 kb on - strandat 40.884 kb on + strandat 41.071 kb on - strand, within HMPREF1078_RS14955at 41.091 kb on + strand, within HMPREF1078_RS14955at 41.092 kb on - strand, within HMPREF1078_RS14955

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day4
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38,561 + +0.2
38,562 - -0.9
38,565 + -1.6
38,565 + -1.6
38,565 + -0.5
38,566 - +0.5
38,566 - +0.4
38,566 - +1.5
38,596 + -1.6
38,597 - -2.4
38,745 + -0.8
38,745 + -2.5
38,750 - -0.4
38,787 + +0.2
38,787 + +1.7
38,790 + +0.3
38,790 + +1.0
38,790 + -0.4
38,790 + -1.8
38,790 + -0.4
38,790 + +1.6
38,792 + +1.2
38,792 + +0.2
38,880 + HMPREF1078_RS14940 0.14 +1.8
38,915 + HMPREF1078_RS14940 0.19 +0.6
38,915 + HMPREF1078_RS14940 0.19 +0.2
38,931 + HMPREF1078_RS14940 0.21 -0.8
38,931 + HMPREF1078_RS14940 0.21 -0.4
38,983 + HMPREF1078_RS14940 0.28 -1.6
38,996 + HMPREF1078_RS14940 0.29 +0.6
38,996 + HMPREF1078_RS14940 0.29 -0.8
39,025 + HMPREF1078_RS14940 0.33 +0.1
39,044 - HMPREF1078_RS14940 0.36 -0.4
39,052 + HMPREF1078_RS14940 0.37 +1.2
39,053 - HMPREF1078_RS14940 0.37 -1.2
39,053 - HMPREF1078_RS14940 0.37 -0.4
39,064 + HMPREF1078_RS14940 0.38 +0.8
39,064 + HMPREF1078_RS14940 0.38 +2.1
39,069 - HMPREF1078_RS14940 0.39 -0.8
39,076 + HMPREF1078_RS14940 0.40 +1.2
39,107 + HMPREF1078_RS14940 0.44 -0.6
39,107 + HMPREF1078_RS14940 0.44 +1.1
39,109 + HMPREF1078_RS14940 0.44 +0.1
39,112 + HMPREF1078_RS14940 0.45 +2.4
39,112 + HMPREF1078_RS14940 0.45 -2.2
39,124 + HMPREF1078_RS14940 0.46 -0.8
39,130 + HMPREF1078_RS14940 0.47 +0.4
39,182 + HMPREF1078_RS14940 0.54 -0.2
39,182 + HMPREF1078_RS14940 0.54 -1.4
39,184 + HMPREF1078_RS14940 0.54 -0.4
39,292 + HMPREF1078_RS14940 0.69 -1.0
39,292 + HMPREF1078_RS14940 0.69 +1.3
39,358 + HMPREF1078_RS14940 0.77 +0.4
39,359 - HMPREF1078_RS14940 0.77 -2.2
39,436 + HMPREF1078_RS14940 0.88 -1.2
39,436 + HMPREF1078_RS14940 0.88 +0.7
39,440 + HMPREF1078_RS14940 0.88 +0.5
39,440 + HMPREF1078_RS14940 0.88 +0.1
39,440 + HMPREF1078_RS14940 0.88 -3.2
39,446 + HMPREF1078_RS14940 0.89 +0.9
39,499 + -1.8
39,540 - -2.2
39,566 + -2.3
39,566 + -0.8
39,589 + -2.4
39,778 + HMPREF1078_RS14945 0.38 -2.6
39,931 + HMPREF1078_RS14945 0.65 -2.0
39,931 + HMPREF1078_RS14945 0.65 -2.4
39,958 + HMPREF1078_RS14945 0.70 -2.4
39,967 + HMPREF1078_RS14945 0.72 -1.8
39,969 + HMPREF1078_RS14945 0.72 -2.4
39,969 + HMPREF1078_RS14945 0.72 -1.6
39,969 + HMPREF1078_RS14945 0.72 -2.0
39,971 + HMPREF1078_RS14945 0.72 -1.6
39,971 + HMPREF1078_RS14945 0.72 -3.1
40,005 + HMPREF1078_RS14945 0.78 -4.0
40,005 + HMPREF1078_RS14945 0.78 -3.9
40,005 + HMPREF1078_RS14945 0.78 -2.7
40,005 + HMPREF1078_RS14945 0.78 -1.4
40,005 + HMPREF1078_RS14945 0.78 -2.9
40,007 + HMPREF1078_RS14945 0.79 -2.7
40,007 + HMPREF1078_RS14945 0.79 -1.2
40,128 + -1.0
40,128 + -1.5
40,160 + -0.1
40,165 + -2.6
40,165 + -1.8
40,328 + HMPREF1078_RS14950 0.41 +0.2
40,332 + HMPREF1078_RS14950 0.42 -0.4
40,332 + HMPREF1078_RS14950 0.42 -2.0
40,332 + HMPREF1078_RS14950 0.42 +1.2
40,332 + HMPREF1078_RS14950 0.42 -0.8
40,332 + HMPREF1078_RS14950 0.42 +0.7
40,344 + HMPREF1078_RS14950 0.44 -0.2
40,359 + HMPREF1078_RS14950 0.47 +2.2
40,360 - HMPREF1078_RS14950 0.48 -0.4
40,442 + HMPREF1078_RS14950 0.65 -0.4
40,616 + -0.4
40,695 - -0.4
40,760 + -2.4
40,770 + -0.4
40,772 - +1.3
40,775 + -0.7
40,776 - -1.3
40,776 - -0.2
40,815 + -2.7
40,816 - -0.2
40,884 + +0.2
41,071 - HMPREF1078_RS14955 0.12 -2.2
41,091 + HMPREF1078_RS14955 0.13 -1.4
41,092 - HMPREF1078_RS14955 0.13 -5.0

Or see this region's nucleotide sequence