Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS14835 and HMPREF1078_RS14840 are separated by 88 nucleotides HMPREF1078_RS14840 and HMPREF1078_RS14845 are separated by 12 nucleotides
HMPREF1078_RS14835: HMPREF1078_RS14835 - SDR family oxidoreductase, at 11,378 to 12,214
_RS14835
HMPREF1078_RS14840: HMPREF1078_RS14840 - RNA methyltransferase, at 12,303 to 13,112
_RS14840
HMPREF1078_RS14845: HMPREF1078_RS14845 - alcohol dehydrogenase, at 13,125 to 14,156
_RS14845
Position (kb) 12
13
14 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 11.317 kb on + strand at 11.318 kb on - strand at 11.340 kb on + strand at 11.340 kb on + strand at 11.367 kb on + strand at 11.369 kb on + strand at 11.370 kb on - strand at 11.370 kb on - strand at 11.370 kb on - strand at 11.389 kb on - strand at 11.389 kb on - strand at 11.596 kb on + strand, within HMPREF1078_RS14835 at 11.644 kb on + strand, within HMPREF1078_RS14835 at 11.710 kb on + strand, within HMPREF1078_RS14835 at 11.711 kb on - strand, within HMPREF1078_RS14835 at 11.948 kb on + strand, within HMPREF1078_RS14835 at 12.074 kb on - strand, within HMPREF1078_RS14835 at 12.142 kb on - strand at 12.142 kb on - strand at 12.154 kb on + strand at 12.154 kb on + strand at 12.154 kb on + strand at 12.176 kb on - strand at 12.184 kb on - strand at 12.232 kb on + strand at 12.233 kb on - strand at 12.277 kb on + strand at 12.363 kb on - strand at 12.403 kb on + strand, within HMPREF1078_RS14840 at 12.506 kb on + strand, within HMPREF1078_RS14840 at 12.769 kb on - strand, within HMPREF1078_RS14840 at 12.769 kb on - strand, within HMPREF1078_RS14840 at 12.833 kb on - strand, within HMPREF1078_RS14840 at 12.870 kb on - strand, within HMPREF1078_RS14840 at 12.871 kb on + strand, within HMPREF1078_RS14840 at 12.871 kb on + strand, within HMPREF1078_RS14840 at 12.923 kb on + strand, within HMPREF1078_RS14840 at 12.948 kb on + strand, within HMPREF1078_RS14840 at 13.000 kb on - strand, within HMPREF1078_RS14840 at 13.059 kb on - strand at 13.059 kb on - strand at 13.129 kb on + strand at 13.234 kb on - strand, within HMPREF1078_RS14845 at 13.234 kb on - strand, within HMPREF1078_RS14845 at 13.319 kb on - strand, within HMPREF1078_RS14845 at 13.342 kb on - strand, within HMPREF1078_RS14845 at 13.461 kb on + strand, within HMPREF1078_RS14845 at 13.493 kb on + strand, within HMPREF1078_RS14845 at 13.522 kb on + strand, within HMPREF1078_RS14845 at 13.574 kb on + strand, within HMPREF1078_RS14845 at 13.605 kb on + strand, within HMPREF1078_RS14845 at 13.611 kb on - strand, within HMPREF1078_RS14845 at 13.858 kb on + strand, within HMPREF1078_RS14845 at 13.859 kb on - strand, within HMPREF1078_RS14845 at 13.968 kb on + strand, within HMPREF1078_RS14845 at 13.968 kb on + strand, within HMPREF1078_RS14845 at 14.028 kb on - strand, within HMPREF1078_RS14845 at 14.048 kb on + strand, within HMPREF1078_RS14845 at 14.048 kb on + strand, within HMPREF1078_RS14845 at 14.049 kb on - strand, within HMPREF1078_RS14845 at 14.049 kb on - strand, within HMPREF1078_RS14845
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day4 remove 11,317 + +1.1 11,318 - -0.4 11,340 + +1.2 11,340 + -0.5 11,367 + -0.6 11,369 + +0.9 11,370 - +0.4 11,370 - +3.2 11,370 - -0.8 11,389 - -1.1 11,389 - +0.8 11,596 + HMPREF1078_RS14835 0.26 +2.8 11,644 + HMPREF1078_RS14835 0.32 -0.1 11,710 + HMPREF1078_RS14835 0.40 -1.4 11,711 - HMPREF1078_RS14835 0.40 -2.6 11,948 + HMPREF1078_RS14835 0.68 -0.7 12,074 - HMPREF1078_RS14835 0.83 +2.2 12,142 - -0.8 12,142 - +2.8 12,154 + +1.2 12,154 + -0.6 12,154 + +0.9 12,176 - +0.9 12,184 - -0.9 12,232 + +0.3 12,233 - +1.6 12,277 + -0.4 12,363 - -0.3 12,403 + HMPREF1078_RS14840 0.12 -0.8 12,506 + HMPREF1078_RS14840 0.25 -1.9 12,769 - HMPREF1078_RS14840 0.58 -1.8 12,769 - HMPREF1078_RS14840 0.58 -0.1 12,833 - HMPREF1078_RS14840 0.65 -0.5 12,870 - HMPREF1078_RS14840 0.70 +0.4 12,871 + HMPREF1078_RS14840 0.70 +0.6 12,871 + HMPREF1078_RS14840 0.70 +0.8 12,923 + HMPREF1078_RS14840 0.77 -1.4 12,948 + HMPREF1078_RS14840 0.80 +0.4 13,000 - HMPREF1078_RS14840 0.86 -0.2 13,059 - -0.4 13,059 - +2.0 13,129 + +0.3 13,234 - HMPREF1078_RS14845 0.11 -0.8 13,234 - HMPREF1078_RS14845 0.11 -1.6 13,319 - HMPREF1078_RS14845 0.19 -0.2 13,342 - HMPREF1078_RS14845 0.21 -2.4 13,461 + HMPREF1078_RS14845 0.33 +0.0 13,493 + HMPREF1078_RS14845 0.36 +0.6 13,522 + HMPREF1078_RS14845 0.38 -2.3 13,574 + HMPREF1078_RS14845 0.44 +1.3 13,605 + HMPREF1078_RS14845 0.47 -1.2 13,611 - HMPREF1078_RS14845 0.47 -0.8 13,858 + HMPREF1078_RS14845 0.71 +1.6 13,859 - HMPREF1078_RS14845 0.71 -0.2 13,968 + HMPREF1078_RS14845 0.82 -0.8 13,968 + HMPREF1078_RS14845 0.82 -1.4 14,028 - HMPREF1078_RS14845 0.88 -0.4 14,048 + HMPREF1078_RS14845 0.89 +0.2 14,048 + HMPREF1078_RS14845 0.89 -0.4 14,049 - HMPREF1078_RS14845 0.90 +1.2 14,049 - HMPREF1078_RS14845 0.90 -0.4
Or see this region's nucleotide sequence