Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS14700

Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1078_RS14695 and HMPREF1078_RS14700 are separated by 23 nucleotidesHMPREF1078_RS14700 and HMPREF1078_RS14705 overlap by 4 nucleotides HMPREF1078_RS14695: HMPREF1078_RS14695 - signal recognition particle protein, at 435,675 to 437,000 _RS14695 HMPREF1078_RS14700: HMPREF1078_RS14700 - bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD, at 437,024 to 437,920 _RS14700 HMPREF1078_RS14705: HMPREF1078_RS14705 - CapA family protein, at 437,917 to 439,002 _RS14705 Position (kb) 437 438Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 436.946 kb on + strandat 436.946 kb on + strandat 436.946 kb on + strandat 437.016 kb on - strandat 437.024 kb on - strandat 437.039 kb on + strandat 437.041 kb on + strandat 437.041 kb on + strandat 437.041 kb on + strandat 437.042 kb on - strandat 437.042 kb on - strandat 437.046 kb on + strandat 437.076 kb on + strandat 437.146 kb on + strand, within HMPREF1078_RS14700at 437.146 kb on + strand, within HMPREF1078_RS14700at 437.146 kb on + strand, within HMPREF1078_RS14700at 437.147 kb on - strand, within HMPREF1078_RS14700at 437.180 kb on + strand, within HMPREF1078_RS14700at 437.180 kb on + strand, within HMPREF1078_RS14700at 437.180 kb on + strand, within HMPREF1078_RS14700at 437.180 kb on + strand, within HMPREF1078_RS14700at 437.180 kb on + strand, within HMPREF1078_RS14700at 437.181 kb on - strand, within HMPREF1078_RS14700at 437.181 kb on - strand, within HMPREF1078_RS14700at 437.181 kb on - strand, within HMPREF1078_RS14700at 437.181 kb on - strand, within HMPREF1078_RS14700at 437.191 kb on + strand, within HMPREF1078_RS14700at 437.206 kb on + strand, within HMPREF1078_RS14700at 437.206 kb on + strand, within HMPREF1078_RS14700at 437.206 kb on + strand, within HMPREF1078_RS14700at 437.206 kb on + strand, within HMPREF1078_RS14700at 437.207 kb on - strand, within HMPREF1078_RS14700at 437.254 kb on + strand, within HMPREF1078_RS14700at 437.255 kb on - strand, within HMPREF1078_RS14700at 437.318 kb on - strand, within HMPREF1078_RS14700at 437.322 kb on + strand, within HMPREF1078_RS14700at 437.323 kb on - strand, within HMPREF1078_RS14700at 437.344 kb on + strand, within HMPREF1078_RS14700at 437.344 kb on + strand, within HMPREF1078_RS14700at 437.344 kb on + strand, within HMPREF1078_RS14700at 437.345 kb on - strand, within HMPREF1078_RS14700at 437.345 kb on - strand, within HMPREF1078_RS14700at 437.379 kb on - strand, within HMPREF1078_RS14700at 437.383 kb on + strand, within HMPREF1078_RS14700at 437.384 kb on - strand, within HMPREF1078_RS14700at 437.391 kb on + strand, within HMPREF1078_RS14700at 437.391 kb on + strand, within HMPREF1078_RS14700at 437.391 kb on + strand, within HMPREF1078_RS14700at 437.392 kb on - strand, within HMPREF1078_RS14700at 437.392 kb on - strand, within HMPREF1078_RS14700at 437.422 kb on + strand, within HMPREF1078_RS14700at 437.422 kb on + strand, within HMPREF1078_RS14700at 437.422 kb on + strand, within HMPREF1078_RS14700at 437.422 kb on + strand, within HMPREF1078_RS14700at 437.422 kb on + strand, within HMPREF1078_RS14700at 437.422 kb on + strand, within HMPREF1078_RS14700at 437.422 kb on + strand, within HMPREF1078_RS14700at 437.422 kb on + strand, within HMPREF1078_RS14700at 437.422 kb on + strand, within HMPREF1078_RS14700at 437.423 kb on - strand, within HMPREF1078_RS14700at 437.423 kb on - strand, within HMPREF1078_RS14700at 437.423 kb on - strand, within HMPREF1078_RS14700at 437.423 kb on - strand, within HMPREF1078_RS14700at 437.423 kb on - strand, within HMPREF1078_RS14700at 437.423 kb on - strand, within HMPREF1078_RS14700at 437.423 kb on - strand, within HMPREF1078_RS14700at 437.423 kb on - strand, within HMPREF1078_RS14700at 437.423 kb on - strand, within HMPREF1078_RS14700at 437.429 kb on - strand, within HMPREF1078_RS14700at 437.533 kb on + strand, within HMPREF1078_RS14700at 437.534 kb on - strand, within HMPREF1078_RS14700at 437.534 kb on - strand, within HMPREF1078_RS14700at 437.536 kb on + strand, within HMPREF1078_RS14700at 437.596 kb on + strand, within HMPREF1078_RS14700at 437.596 kb on + strand, within HMPREF1078_RS14700at 437.597 kb on - strand, within HMPREF1078_RS14700at 437.660 kb on - strand, within HMPREF1078_RS14700at 437.662 kb on + strand, within HMPREF1078_RS14700at 437.706 kb on + strand, within HMPREF1078_RS14700at 437.707 kb on - strand, within HMPREF1078_RS14700at 437.776 kb on + strand, within HMPREF1078_RS14700at 437.777 kb on - strand, within HMPREF1078_RS14700at 437.815 kb on + strand, within HMPREF1078_RS14700at 437.815 kb on + strand, within HMPREF1078_RS14700at 437.816 kb on - strand, within HMPREF1078_RS14700at 437.816 kb on - strand, within HMPREF1078_RS14700at 437.825 kb on + strand, within HMPREF1078_RS14700at 437.825 kb on + strand, within HMPREF1078_RS14700at 437.825 kb on + strand, within HMPREF1078_RS14700at 437.825 kb on + strand, within HMPREF1078_RS14700at 437.827 kb on + strand, within HMPREF1078_RS14700at 437.828 kb on - strand, within HMPREF1078_RS14700at 437.850 kb on + strandat 437.851 kb on - strandat 437.867 kb on - strandat 437.912 kb on + strandat 437.914 kb on + strandat 437.914 kb on + strandat 438.067 kb on + strand, within HMPREF1078_RS14705at 438.067 kb on + strand, within HMPREF1078_RS14705at 438.068 kb on - strand, within HMPREF1078_RS14705at 438.089 kb on - strand, within HMPREF1078_RS14705at 438.148 kb on + strand, within HMPREF1078_RS14705at 438.148 kb on + strand, within HMPREF1078_RS14705at 438.148 kb on + strand, within HMPREF1078_RS14705at 438.149 kb on - strand, within HMPREF1078_RS14705at 438.149 kb on - strand, within HMPREF1078_RS14705at 438.150 kb on + strand, within HMPREF1078_RS14705at 438.150 kb on + strand, within HMPREF1078_RS14705at 438.151 kb on - strand, within HMPREF1078_RS14705at 438.234 kb on + strand, within HMPREF1078_RS14705at 438.246 kb on - strand, within HMPREF1078_RS14705at 438.246 kb on - strand, within HMPREF1078_RS14705at 438.250 kb on - strand, within HMPREF1078_RS14705at 438.397 kb on + strand, within HMPREF1078_RS14705at 438.397 kb on + strand, within HMPREF1078_RS14705at 438.398 kb on - strand, within HMPREF1078_RS14705at 438.398 kb on - strand, within HMPREF1078_RS14705at 438.399 kb on + strand, within HMPREF1078_RS14705at 438.399 kb on + strand, within HMPREF1078_RS14705at 438.399 kb on + strand, within HMPREF1078_RS14705at 438.400 kb on - strand, within HMPREF1078_RS14705at 438.400 kb on - strand, within HMPREF1078_RS14705at 438.403 kb on + strand, within HMPREF1078_RS14705at 438.404 kb on - strand, within HMPREF1078_RS14705at 438.404 kb on - strand, within HMPREF1078_RS14705at 438.408 kb on + strand, within HMPREF1078_RS14705at 438.409 kb on - strand, within HMPREF1078_RS14705at 438.409 kb on - strand, within HMPREF1078_RS14705at 438.451 kb on - strand, within HMPREF1078_RS14705at 438.465 kb on - strand, within HMPREF1078_RS14705at 438.477 kb on + strand, within HMPREF1078_RS14705at 438.478 kb on - strand, within HMPREF1078_RS14705at 438.515 kb on + strand, within HMPREF1078_RS14705at 438.519 kb on + strand, within HMPREF1078_RS14705at 438.519 kb on + strand, within HMPREF1078_RS14705at 438.519 kb on + strand, within HMPREF1078_RS14705at 438.519 kb on + strand, within HMPREF1078_RS14705at 438.519 kb on + strand, within HMPREF1078_RS14705at 438.520 kb on - strand, within HMPREF1078_RS14705at 438.523 kb on - strand, within HMPREF1078_RS14705at 438.551 kb on + strand, within HMPREF1078_RS14705at 438.552 kb on - strand, within HMPREF1078_RS14705at 438.615 kb on - strand, within HMPREF1078_RS14705at 438.703 kb on - strand, within HMPREF1078_RS14705at 438.709 kb on - strand, within HMPREF1078_RS14705at 438.717 kb on + strand, within HMPREF1078_RS14705at 438.717 kb on + strand, within HMPREF1078_RS14705at 438.718 kb on - strand, within HMPREF1078_RS14705at 438.732 kb on + strand, within HMPREF1078_RS14705at 438.787 kb on + strand, within HMPREF1078_RS14705at 438.788 kb on - strand, within HMPREF1078_RS14705at 438.792 kb on + strand, within HMPREF1078_RS14705at 438.792 kb on + strand, within HMPREF1078_RS14705at 438.792 kb on + strand, within HMPREF1078_RS14705at 438.806 kb on - strand, within HMPREF1078_RS14705at 438.832 kb on - strand, within HMPREF1078_RS14705at 438.855 kb on + strand, within HMPREF1078_RS14705at 438.855 kb on + strand, within HMPREF1078_RS14705

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day4
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436,946 + -0.5
436,946 + -1.5
436,946 + -1.4
437,016 - -1.4
437,024 - -1.8
437,039 + -2.6
437,041 + -1.8
437,041 + -3.8
437,041 + -2.6
437,042 - -3.9
437,042 - -1.6
437,046 + -1.6
437,076 + -3.3
437,146 + HMPREF1078_RS14700 0.14 -1.1
437,146 + HMPREF1078_RS14700 0.14 -0.8
437,146 + HMPREF1078_RS14700 0.14 -2.8
437,147 - HMPREF1078_RS14700 0.14 -2.6
437,180 + HMPREF1078_RS14700 0.17 -0.4
437,180 + HMPREF1078_RS14700 0.17 -4.3
437,180 + HMPREF1078_RS14700 0.17 -3.1
437,180 + HMPREF1078_RS14700 0.17 -3.3
437,180 + HMPREF1078_RS14700 0.17 -2.3
437,181 - HMPREF1078_RS14700 0.18 -1.4
437,181 - HMPREF1078_RS14700 0.18 -4.3
437,181 - HMPREF1078_RS14700 0.18 -2.6
437,181 - HMPREF1078_RS14700 0.18 -1.6
437,191 + HMPREF1078_RS14700 0.19 -1.2
437,206 + HMPREF1078_RS14700 0.20 -2.1
437,206 + HMPREF1078_RS14700 0.20 -3.0
437,206 + HMPREF1078_RS14700 0.20 -3.3
437,206 + HMPREF1078_RS14700 0.20 -5.5
437,207 - HMPREF1078_RS14700 0.20 -1.6
437,254 + HMPREF1078_RS14700 0.26 -4.8
437,255 - HMPREF1078_RS14700 0.26 +0.2
437,318 - HMPREF1078_RS14700 0.33 +0.2
437,322 + HMPREF1078_RS14700 0.33 -2.8
437,323 - HMPREF1078_RS14700 0.33 -0.4
437,344 + HMPREF1078_RS14700 0.36 -2.6
437,344 + HMPREF1078_RS14700 0.36 -1.8
437,344 + HMPREF1078_RS14700 0.36 -0.8
437,345 - HMPREF1078_RS14700 0.36 -1.8
437,345 - HMPREF1078_RS14700 0.36 -2.3
437,379 - HMPREF1078_RS14700 0.40 -2.6
437,383 + HMPREF1078_RS14700 0.40 -3.5
437,384 - HMPREF1078_RS14700 0.40 -2.0
437,391 + HMPREF1078_RS14700 0.41 -4.2
437,391 + HMPREF1078_RS14700 0.41 -3.5
437,391 + HMPREF1078_RS14700 0.41 -3.7
437,392 - HMPREF1078_RS14700 0.41 -0.4
437,392 - HMPREF1078_RS14700 0.41 +1.2
437,422 + HMPREF1078_RS14700 0.44 -3.0
437,422 + HMPREF1078_RS14700 0.44 -2.6
437,422 + HMPREF1078_RS14700 0.44 -3.9
437,422 + HMPREF1078_RS14700 0.44 -2.6
437,422 + HMPREF1078_RS14700 0.44 -1.1
437,422 + HMPREF1078_RS14700 0.44 -2.6
437,422 + HMPREF1078_RS14700 0.44 -3.7
437,422 + HMPREF1078_RS14700 0.44 -2.1
437,422 + HMPREF1078_RS14700 0.44 -2.7
437,423 - HMPREF1078_RS14700 0.44 -2.1
437,423 - HMPREF1078_RS14700 0.44 -3.0
437,423 - HMPREF1078_RS14700 0.44 -3.2
437,423 - HMPREF1078_RS14700 0.44 -2.3
437,423 - HMPREF1078_RS14700 0.44 -3.5
437,423 - HMPREF1078_RS14700 0.44 +1.2
437,423 - HMPREF1078_RS14700 0.44 -2.6
437,423 - HMPREF1078_RS14700 0.44 -2.6
437,423 - HMPREF1078_RS14700 0.44 -4.5
437,429 - HMPREF1078_RS14700 0.45 -4.0
437,533 + HMPREF1078_RS14700 0.57 -2.0
437,534 - HMPREF1078_RS14700 0.57 -4.6
437,534 - HMPREF1078_RS14700 0.57 -4.1
437,536 + HMPREF1078_RS14700 0.57 -3.0
437,596 + HMPREF1078_RS14700 0.64 -1.4
437,596 + HMPREF1078_RS14700 0.64 -2.1
437,597 - HMPREF1078_RS14700 0.64 -0.4
437,660 - HMPREF1078_RS14700 0.71 +0.2
437,662 + HMPREF1078_RS14700 0.71 -2.9
437,706 + HMPREF1078_RS14700 0.76 -3.0
437,707 - HMPREF1078_RS14700 0.76 -2.8
437,776 + HMPREF1078_RS14700 0.84 -2.7
437,777 - HMPREF1078_RS14700 0.84 +0.2
437,815 + HMPREF1078_RS14700 0.88 -3.0
437,815 + HMPREF1078_RS14700 0.88 -2.3
437,816 - HMPREF1078_RS14700 0.88 -3.4
437,816 - HMPREF1078_RS14700 0.88 -0.4
437,825 + HMPREF1078_RS14700 0.89 -3.1
437,825 + HMPREF1078_RS14700 0.89 -2.8
437,825 + HMPREF1078_RS14700 0.89 -1.4
437,825 + HMPREF1078_RS14700 0.89 -4.0
437,827 + HMPREF1078_RS14700 0.90 -2.4
437,828 - HMPREF1078_RS14700 0.90 -1.1
437,850 + -2.9
437,851 - -3.5
437,867 - -4.6
437,912 + -0.3
437,914 + -5.6
437,914 + -2.0
438,067 + HMPREF1078_RS14705 0.14 +0.3
438,067 + HMPREF1078_RS14705 0.14 -0.8
438,068 - HMPREF1078_RS14705 0.14 -0.9
438,089 - HMPREF1078_RS14705 0.16 +0.2
438,148 + HMPREF1078_RS14705 0.21 +1.3
438,148 + HMPREF1078_RS14705 0.21 +0.2
438,148 + HMPREF1078_RS14705 0.21 -3.2
438,149 - HMPREF1078_RS14705 0.21 -0.3
438,149 - HMPREF1078_RS14705 0.21 +0.9
438,150 + HMPREF1078_RS14705 0.21 +1.2
438,150 + HMPREF1078_RS14705 0.21 -1.1
438,151 - HMPREF1078_RS14705 0.22 -1.4
438,234 + HMPREF1078_RS14705 0.29 -2.3
438,246 - HMPREF1078_RS14705 0.30 -0.8
438,246 - HMPREF1078_RS14705 0.30 -0.5
438,250 - HMPREF1078_RS14705 0.31 -0.4
438,397 + HMPREF1078_RS14705 0.44 -0.6
438,397 + HMPREF1078_RS14705 0.44 -0.0
438,398 - HMPREF1078_RS14705 0.44 -0.4
438,398 - HMPREF1078_RS14705 0.44 -0.4
438,399 + HMPREF1078_RS14705 0.44 -1.3
438,399 + HMPREF1078_RS14705 0.44 -0.9
438,399 + HMPREF1078_RS14705 0.44 +0.8
438,400 - HMPREF1078_RS14705 0.44 -3.0
438,400 - HMPREF1078_RS14705 0.44 -0.7
438,403 + HMPREF1078_RS14705 0.45 -0.8
438,404 - HMPREF1078_RS14705 0.45 +0.1
438,404 - HMPREF1078_RS14705 0.45 -1.0
438,408 + HMPREF1078_RS14705 0.45 -0.6
438,409 - HMPREF1078_RS14705 0.45 -1.0
438,409 - HMPREF1078_RS14705 0.45 -3.3
438,451 - HMPREF1078_RS14705 0.49 -2.0
438,465 - HMPREF1078_RS14705 0.50 +0.5
438,477 + HMPREF1078_RS14705 0.52 -1.0
438,478 - HMPREF1078_RS14705 0.52 +0.4
438,515 + HMPREF1078_RS14705 0.55 -1.1
438,519 + HMPREF1078_RS14705 0.55 -0.6
438,519 + HMPREF1078_RS14705 0.55 +0.5
438,519 + HMPREF1078_RS14705 0.55 -2.3
438,519 + HMPREF1078_RS14705 0.55 -1.0
438,519 + HMPREF1078_RS14705 0.55 +0.6
438,520 - HMPREF1078_RS14705 0.56 +0.2
438,523 - HMPREF1078_RS14705 0.56 -1.3
438,551 + HMPREF1078_RS14705 0.58 +1.2
438,552 - HMPREF1078_RS14705 0.58 -2.4
438,615 - HMPREF1078_RS14705 0.64 +0.7
438,703 - HMPREF1078_RS14705 0.72 +0.5
438,709 - HMPREF1078_RS14705 0.73 -2.3
438,717 + HMPREF1078_RS14705 0.74 +1.0
438,717 + HMPREF1078_RS14705 0.74 -0.8
438,718 - HMPREF1078_RS14705 0.74 -2.0
438,732 + HMPREF1078_RS14705 0.75 +0.6
438,787 + HMPREF1078_RS14705 0.80 -0.9
438,788 - HMPREF1078_RS14705 0.80 +1.0
438,792 + HMPREF1078_RS14705 0.81 -0.9
438,792 + HMPREF1078_RS14705 0.81 +0.5
438,792 + HMPREF1078_RS14705 0.81 -1.3
438,806 - HMPREF1078_RS14705 0.82 +3.5
438,832 - HMPREF1078_RS14705 0.84 -2.0
438,855 + HMPREF1078_RS14705 0.86 +0.4
438,855 + HMPREF1078_RS14705 0.86 -1.0

Or see this region's nucleotide sequence