Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS14610 and HMPREF1078_RS14615 are separated by 76 nucleotides HMPREF1078_RS14615 and HMPREF1078_RS14620 are separated by 135 nucleotides HMPREF1078_RS14620 and HMPREF1078_RS14625 overlap by 4 nucleotides HMPREF1078_RS14625 and HMPREF1078_RS14630 are separated by 15 nucleotides HMPREF1078_RS14630 and HMPREF1078_RS14635 are separated by 1 nucleotides
HMPREF1078_RS14610: HMPREF1078_RS14610 - 6,7-dimethyl-8-ribityllumazine synthase, at 417,526 to 418,008
_RS14610
HMPREF1078_RS14615: HMPREF1078_RS14615 - tetratricopeptide repeat protein, at 418,085 to 418,771
_RS14615
HMPREF1078_RS14620: HMPREF1078_RS14620 - DNA replication and repair protein RecF, at 418,907 to 420,010
_RS14620
HMPREF1078_RS14625: HMPREF1078_RS14625 - DUF721 domain-containing protein, at 420,007 to 420,300
_RS14625
HMPREF1078_RS14630: HMPREF1078_RS14630 - YkvA family protein, at 420,316 to 420,711
_RS14630
HMPREF1078_RS14635: HMPREF1078_RS14635 - 5-formyltetrahydrofolate cyclo-ligase, at 420,713 to 421,228
_RS14635
Position (kb) 418
419
420
421 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 418.060 kb on - strand at 418.060 kb on - strand at 418.062 kb on - strand at 418.062 kb on - strand at 418.062 kb on - strand at 418.062 kb on - strand at 418.068 kb on - strand at 418.068 kb on - strand at 418.068 kb on - strand at 418.070 kb on - strand at 418.080 kb on - strand at 418.080 kb on - strand at 418.080 kb on - strand at 418.080 kb on - strand at 418.082 kb on - strand at 418.082 kb on - strand at 418.082 kb on - strand at 418.082 kb on - strand at 418.082 kb on - strand at 418.082 kb on - strand at 418.082 kb on - strand at 418.087 kb on - strand at 418.087 kb on - strand at 418.087 kb on - strand at 418.087 kb on - strand at 418.115 kb on - strand at 418.115 kb on - strand at 418.115 kb on - strand at 418.117 kb on - strand at 418.117 kb on - strand at 418.117 kb on - strand at 418.174 kb on - strand, within HMPREF1078_RS14615 at 418.320 kb on - strand, within HMPREF1078_RS14615 at 418.324 kb on - strand, within HMPREF1078_RS14615 at 418.324 kb on - strand, within HMPREF1078_RS14615 at 418.324 kb on - strand, within HMPREF1078_RS14615 at 418.429 kb on - strand, within HMPREF1078_RS14615 at 418.580 kb on - strand, within HMPREF1078_RS14615 at 418.615 kb on - strand, within HMPREF1078_RS14615 at 418.662 kb on - strand, within HMPREF1078_RS14615 at 418.789 kb on - strand at 418.797 kb on - strand at 418.797 kb on - strand at 418.894 kb on + strand at 418.897 kb on + strand at 418.927 kb on + strand at 418.980 kb on + strand at 419.039 kb on + strand, within HMPREF1078_RS14620 at 419.068 kb on + strand, within HMPREF1078_RS14620 at 419.069 kb on - strand, within HMPREF1078_RS14620 at 419.122 kb on + strand, within HMPREF1078_RS14620 at 419.122 kb on + strand, within HMPREF1078_RS14620 at 419.123 kb on - strand, within HMPREF1078_RS14620 at 419.123 kb on - strand, within HMPREF1078_RS14620 at 419.126 kb on + strand, within HMPREF1078_RS14620 at 419.126 kb on + strand, within HMPREF1078_RS14620 at 419.126 kb on + strand, within HMPREF1078_RS14620 at 419.132 kb on + strand, within HMPREF1078_RS14620 at 419.200 kb on + strand, within HMPREF1078_RS14620 at 419.280 kb on + strand, within HMPREF1078_RS14620 at 419.345 kb on + strand, within HMPREF1078_RS14620 at 419.361 kb on + strand, within HMPREF1078_RS14620 at 419.368 kb on + strand, within HMPREF1078_RS14620 at 419.459 kb on + strand, within HMPREF1078_RS14620 at 419.474 kb on + strand, within HMPREF1078_RS14620 at 419.474 kb on + strand, within HMPREF1078_RS14620 at 419.501 kb on + strand, within HMPREF1078_RS14620 at 419.525 kb on + strand, within HMPREF1078_RS14620 at 419.570 kb on + strand, within HMPREF1078_RS14620 at 419.572 kb on + strand, within HMPREF1078_RS14620 at 419.572 kb on + strand, within HMPREF1078_RS14620 at 419.647 kb on + strand, within HMPREF1078_RS14620 at 419.738 kb on + strand, within HMPREF1078_RS14620 at 419.765 kb on + strand, within HMPREF1078_RS14620 at 419.765 kb on + strand, within HMPREF1078_RS14620 at 419.905 kb on + strand at 419.906 kb on - strand at 420.160 kb on + strand, within HMPREF1078_RS14625 at 420.287 kb on + strand at 420.288 kb on - strand at 420.288 kb on - strand at 420.291 kb on + strand at 420.315 kb on + strand at 420.382 kb on + strand, within HMPREF1078_RS14630 at 420.383 kb on - strand, within HMPREF1078_RS14630 at 420.383 kb on - strand, within HMPREF1078_RS14630 at 420.449 kb on + strand, within HMPREF1078_RS14630 at 420.449 kb on + strand, within HMPREF1078_RS14630 at 420.449 kb on + strand, within HMPREF1078_RS14630 at 420.449 kb on + strand, within HMPREF1078_RS14630 at 420.450 kb on - strand, within HMPREF1078_RS14630 at 420.450 kb on - strand, within HMPREF1078_RS14630 at 420.472 kb on + strand, within HMPREF1078_RS14630 at 420.473 kb on - strand, within HMPREF1078_RS14630 at 420.507 kb on + strand, within HMPREF1078_RS14630 at 420.507 kb on + strand, within HMPREF1078_RS14630 at 420.508 kb on - strand, within HMPREF1078_RS14630 at 420.508 kb on - strand, within HMPREF1078_RS14630 at 420.514 kb on + strand, within HMPREF1078_RS14630 at 420.515 kb on - strand, within HMPREF1078_RS14630 at 420.516 kb on + strand, within HMPREF1078_RS14630 at 420.517 kb on - strand, within HMPREF1078_RS14630 at 420.517 kb on - strand, within HMPREF1078_RS14630 at 420.517 kb on - strand, within HMPREF1078_RS14630 at 420.517 kb on - strand, within HMPREF1078_RS14630 at 420.517 kb on - strand, within HMPREF1078_RS14630 at 420.522 kb on - strand, within HMPREF1078_RS14630 at 420.531 kb on - strand, within HMPREF1078_RS14630 at 420.541 kb on - strand, within HMPREF1078_RS14630 at 420.591 kb on + strand, within HMPREF1078_RS14630 at 420.592 kb on - strand, within HMPREF1078_RS14630 at 420.603 kb on - strand, within HMPREF1078_RS14630 at 420.603 kb on - strand, within HMPREF1078_RS14630 at 420.639 kb on + strand, within HMPREF1078_RS14630 at 420.639 kb on + strand, within HMPREF1078_RS14630 at 420.656 kb on + strand, within HMPREF1078_RS14630 at 420.676 kb on - strand at 420.676 kb on - strand at 420.676 kb on - strand at 420.703 kb on - strand at 420.719 kb on + strand at 420.735 kb on - strand at 420.736 kb on + strand at 420.737 kb on - strand at 420.737 kb on - strand at 420.737 kb on - strand at 420.785 kb on + strand, within HMPREF1078_RS14635 at 420.798 kb on + strand, within HMPREF1078_RS14635 at 420.875 kb on - strand, within HMPREF1078_RS14635 at 421.002 kb on + strand, within HMPREF1078_RS14635 at 421.002 kb on + strand, within HMPREF1078_RS14635 at 421.002 kb on + strand, within HMPREF1078_RS14635 at 421.002 kb on + strand, within HMPREF1078_RS14635 at 421.002 kb on + strand, within HMPREF1078_RS14635 at 421.003 kb on - strand, within HMPREF1078_RS14635
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day4 remove 418,060 - -2.0 418,060 - -0.4 418,062 - -3.4 418,062 - -0.1 418,062 - -1.6 418,062 - -2.4 418,068 - +0.9 418,068 - +0.4 418,068 - -0.5 418,070 - -1.3 418,080 - -0.5 418,080 - +0.2 418,080 - +0.2 418,080 - +0.5 418,082 - +1.7 418,082 - -2.1 418,082 - -0.7 418,082 - -1.4 418,082 - -0.1 418,082 - +0.8 418,082 - -0.2 418,087 - -0.4 418,087 - +0.6 418,087 - +1.4 418,087 - -2.1 418,115 - -0.8 418,115 - -0.8 418,115 - -0.4 418,117 - -2.5 418,117 - -0.8 418,117 - +0.2 418,174 - HMPREF1078_RS14615 0.13 -0.8 418,320 - HMPREF1078_RS14615 0.34 +0.2 418,324 - HMPREF1078_RS14615 0.35 -1.1 418,324 - HMPREF1078_RS14615 0.35 -0.4 418,324 - HMPREF1078_RS14615 0.35 -0.4 418,429 - HMPREF1078_RS14615 0.50 -0.8 418,580 - HMPREF1078_RS14615 0.72 +0.2 418,615 - HMPREF1078_RS14615 0.77 -0.4 418,662 - HMPREF1078_RS14615 0.84 +1.2 418,789 - -1.6 418,797 - -1.6 418,797 - -2.3 418,894 + -1.3 418,897 + -0.4 418,927 + -1.1 418,980 + -0.6 419,039 + HMPREF1078_RS14620 0.12 -1.6 419,068 + HMPREF1078_RS14620 0.15 -1.8 419,069 - HMPREF1078_RS14620 0.15 -0.4 419,122 + HMPREF1078_RS14620 0.19 -2.0 419,122 + HMPREF1078_RS14620 0.19 -1.1 419,123 - HMPREF1078_RS14620 0.20 +1.2 419,123 - HMPREF1078_RS14620 0.20 +1.2 419,126 + HMPREF1078_RS14620 0.20 -2.0 419,126 + HMPREF1078_RS14620 0.20 -1.4 419,126 + HMPREF1078_RS14620 0.20 -3.1 419,132 + HMPREF1078_RS14620 0.20 -0.5 419,200 + HMPREF1078_RS14620 0.27 -0.4 419,280 + HMPREF1078_RS14620 0.34 -2.5 419,345 + HMPREF1078_RS14620 0.40 -1.0 419,361 + HMPREF1078_RS14620 0.41 -2.0 419,368 + HMPREF1078_RS14620 0.42 -2.8 419,459 + HMPREF1078_RS14620 0.50 -2.1 419,474 + HMPREF1078_RS14620 0.51 +0.6 419,474 + HMPREF1078_RS14620 0.51 -3.1 419,501 + HMPREF1078_RS14620 0.54 +0.2 419,525 + HMPREF1078_RS14620 0.56 -0.7 419,570 + HMPREF1078_RS14620 0.60 -2.3 419,572 + HMPREF1078_RS14620 0.60 +0.9 419,572 + HMPREF1078_RS14620 0.60 +1.2 419,647 + HMPREF1078_RS14620 0.67 -1.5 419,738 + HMPREF1078_RS14620 0.75 -2.0 419,765 + HMPREF1078_RS14620 0.78 -1.5 419,765 + HMPREF1078_RS14620 0.78 -1.6 419,905 + +0.2 419,906 - +1.2 420,160 + HMPREF1078_RS14625 0.52 +1.2 420,287 + -0.1 420,288 - -0.8 420,288 - +0.2 420,291 + -1.8 420,315 + +0.9 420,382 + HMPREF1078_RS14630 0.17 +0.9 420,383 - HMPREF1078_RS14630 0.17 +0.5 420,383 - HMPREF1078_RS14630 0.17 -0.8 420,449 + HMPREF1078_RS14630 0.34 +1.5 420,449 + HMPREF1078_RS14630 0.34 -1.1 420,449 + HMPREF1078_RS14630 0.34 -0.1 420,449 + HMPREF1078_RS14630 0.34 -3.5 420,450 - HMPREF1078_RS14630 0.34 -0.1 420,450 - HMPREF1078_RS14630 0.34 -1.9 420,472 + HMPREF1078_RS14630 0.39 -3.9 420,473 - HMPREF1078_RS14630 0.40 -0.2 420,507 + HMPREF1078_RS14630 0.48 -2.5 420,507 + HMPREF1078_RS14630 0.48 -2.0 420,508 - HMPREF1078_RS14630 0.48 +0.7 420,508 - HMPREF1078_RS14630 0.48 +2.6 420,514 + HMPREF1078_RS14630 0.50 +1.6 420,515 - HMPREF1078_RS14630 0.50 -1.1 420,516 + HMPREF1078_RS14630 0.51 +1.8 420,517 - HMPREF1078_RS14630 0.51 -0.4 420,517 - HMPREF1078_RS14630 0.51 -0.2 420,517 - HMPREF1078_RS14630 0.51 -0.0 420,517 - HMPREF1078_RS14630 0.51 -0.4 420,517 - HMPREF1078_RS14630 0.51 +2.2 420,522 - HMPREF1078_RS14630 0.52 -0.4 420,531 - HMPREF1078_RS14630 0.54 -0.3 420,541 - HMPREF1078_RS14630 0.57 +1.2 420,591 + HMPREF1078_RS14630 0.69 -0.9 420,592 - HMPREF1078_RS14630 0.70 +0.4 420,603 - HMPREF1078_RS14630 0.72 +0.8 420,603 - HMPREF1078_RS14630 0.72 +1.4 420,639 + HMPREF1078_RS14630 0.82 -2.5 420,639 + HMPREF1078_RS14630 0.82 +0.6 420,656 + HMPREF1078_RS14630 0.86 -0.0 420,676 - -1.4 420,676 - +0.8 420,676 - -1.3 420,703 - -0.8 420,719 + +0.7 420,735 - -1.1 420,736 + -1.1 420,737 - +1.2 420,737 - +0.8 420,737 - +1.4 420,785 + HMPREF1078_RS14635 0.14 +0.4 420,798 + HMPREF1078_RS14635 0.16 -2.3 420,875 - HMPREF1078_RS14635 0.31 -1.8 421,002 + HMPREF1078_RS14635 0.56 -2.1 421,002 + HMPREF1078_RS14635 0.56 +0.2 421,002 + HMPREF1078_RS14635 0.56 -0.8 421,002 + HMPREF1078_RS14635 0.56 -0.6 421,002 + HMPREF1078_RS14635 0.56 -0.4 421,003 - HMPREF1078_RS14635 0.56 -0.0
Or see this region's nucleotide sequence