Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS14345 and HMPREF1078_RS14350 are separated by 12 nucleotides HMPREF1078_RS14350 and HMPREF1078_RS14355 are separated by 51 nucleotides HMPREF1078_RS14355 and HMPREF1078_RS14360 are separated by 154 nucleotides HMPREF1078_RS14360 and HMPREF1078_RS14365 are separated by 338 nucleotides
HMPREF1078_RS14345: HMPREF1078_RS14345 - glycine betaine ABC transporter substrate-binding protein, at 355,680 to 356,549
_RS14345
HMPREF1078_RS14350: HMPREF1078_RS14350 - GDSL-type esterase/lipase family protein, at 356,562 to 357,338
_RS14350
HMPREF1078_RS14355: HMPREF1078_RS14355 - ferritin, at 357,390 to 357,872
_RS14355
HMPREF1078_RS14360: HMPREF1078_RS14360 - Hsp20/alpha crystallin family protein, at 358,027 to 358,455
_RS14360
HMPREF1078_RS14365: HMPREF1078_RS14365 - DUF4153 domain-containing protein, at 358,794 to 360,281
_RS14365
Position (kb) 357
358 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 356.486 kb on + strand at 356.601 kb on - strand at 356.617 kb on - strand at 356.617 kb on - strand at 356.618 kb on + strand at 356.618 kb on + strand at 356.619 kb on - strand at 356.650 kb on + strand, within HMPREF1078_RS14350 at 356.651 kb on - strand, within HMPREF1078_RS14350 at 356.651 kb on - strand, within HMPREF1078_RS14350 at 356.653 kb on + strand, within HMPREF1078_RS14350 at 356.653 kb on + strand, within HMPREF1078_RS14350 at 356.653 kb on + strand, within HMPREF1078_RS14350 at 356.785 kb on + strand, within HMPREF1078_RS14350 at 356.785 kb on + strand, within HMPREF1078_RS14350 at 356.785 kb on + strand, within HMPREF1078_RS14350 at 356.786 kb on - strand, within HMPREF1078_RS14350 at 356.796 kb on - strand, within HMPREF1078_RS14350 at 356.901 kb on - strand, within HMPREF1078_RS14350 at 356.927 kb on + strand, within HMPREF1078_RS14350 at 356.928 kb on - strand, within HMPREF1078_RS14350 at 356.964 kb on + strand, within HMPREF1078_RS14350 at 356.965 kb on - strand, within HMPREF1078_RS14350 at 356.967 kb on + strand, within HMPREF1078_RS14350 at 357.028 kb on + strand, within HMPREF1078_RS14350 at 357.028 kb on + strand, within HMPREF1078_RS14350 at 357.063 kb on + strand, within HMPREF1078_RS14350 at 357.063 kb on + strand, within HMPREF1078_RS14350 at 357.064 kb on - strand, within HMPREF1078_RS14350 at 357.064 kb on - strand, within HMPREF1078_RS14350 at 357.064 kb on - strand, within HMPREF1078_RS14350 at 357.064 kb on - strand, within HMPREF1078_RS14350 at 357.078 kb on + strand, within HMPREF1078_RS14350 at 357.078 kb on + strand, within HMPREF1078_RS14350 at 357.078 kb on + strand, within HMPREF1078_RS14350 at 357.083 kb on - strand, within HMPREF1078_RS14350 at 357.112 kb on - strand, within HMPREF1078_RS14350 at 357.114 kb on + strand, within HMPREF1078_RS14350 at 357.124 kb on + strand, within HMPREF1078_RS14350 at 357.144 kb on + strand, within HMPREF1078_RS14350 at 357.174 kb on - strand, within HMPREF1078_RS14350 at 357.182 kb on + strand, within HMPREF1078_RS14350 at 357.182 kb on + strand, within HMPREF1078_RS14350 at 357.213 kb on + strand, within HMPREF1078_RS14350 at 357.216 kb on - strand, within HMPREF1078_RS14350 at 357.258 kb on + strand, within HMPREF1078_RS14350 at 357.263 kb on - strand at 357.263 kb on - strand at 357.263 kb on - strand at 357.263 kb on - strand at 357.317 kb on - strand at 357.340 kb on - strand at 357.340 kb on - strand at 357.355 kb on - strand at 357.355 kb on - strand at 357.355 kb on - strand at 357.374 kb on + strand at 357.374 kb on + strand at 357.374 kb on + strand at 357.457 kb on - strand, within HMPREF1078_RS14355 at 357.468 kb on - strand, within HMPREF1078_RS14355 at 357.536 kb on + strand, within HMPREF1078_RS14355 at 357.584 kb on - strand, within HMPREF1078_RS14355 at 357.584 kb on - strand, within HMPREF1078_RS14355 at 357.800 kb on - strand, within HMPREF1078_RS14355 at 357.800 kb on - strand, within HMPREF1078_RS14355 at 357.800 kb on - strand, within HMPREF1078_RS14355 at 357.800 kb on - strand, within HMPREF1078_RS14355 at 357.827 kb on + strand at 357.840 kb on - strand at 357.879 kb on - strand at 357.903 kb on - strand at 357.907 kb on + strand at 357.907 kb on + strand at 357.908 kb on - strand at 357.912 kb on + strand at 357.913 kb on - strand at 357.921 kb on + strand at 357.922 kb on - strand at 357.922 kb on - strand at 357.923 kb on + strand at 357.935 kb on + strand at 357.935 kb on + strand at 357.937 kb on + strand at 357.998 kb on - strand at 357.999 kb on + strand at 357.999 kb on + strand at 358.000 kb on - strand at 358.000 kb on - strand at 358.000 kb on - strand at 358.007 kb on - strand at 358.011 kb on + strand at 358.012 kb on - strand at 358.014 kb on - strand at 358.199 kb on + strand, within HMPREF1078_RS14360 at 358.418 kb on + strand at 358.418 kb on + strand at 358.418 kb on + strand at 358.419 kb on - strand at 358.459 kb on - strand at 358.477 kb on - strand at 358.489 kb on - strand at 358.530 kb on - strand at 358.531 kb on + strand at 358.531 kb on + strand at 358.532 kb on - strand at 358.560 kb on + strand at 358.561 kb on - strand at 358.657 kb on + strand at 358.657 kb on + strand at 358.657 kb on + strand at 358.658 kb on - strand at 358.658 kb on - strand at 358.658 kb on - strand at 358.658 kb on - strand at 358.658 kb on - strand at 358.658 kb on - strand at 358.680 kb on + strand at 358.734 kb on - strand at 358.781 kb on - strand at 358.784 kb on + strand at 358.785 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day4 remove 356,486 + +1.0 356,601 - +0.4 356,617 - -0.8 356,617 - -0.3 356,618 + -1.0 356,618 + +0.3 356,619 - -0.1 356,650 + HMPREF1078_RS14350 0.11 -0.7 356,651 - HMPREF1078_RS14350 0.11 -2.0 356,651 - HMPREF1078_RS14350 0.11 -0.9 356,653 + HMPREF1078_RS14350 0.12 -1.7 356,653 + HMPREF1078_RS14350 0.12 +0.2 356,653 + HMPREF1078_RS14350 0.12 -1.5 356,785 + HMPREF1078_RS14350 0.29 -3.1 356,785 + HMPREF1078_RS14350 0.29 -1.4 356,785 + HMPREF1078_RS14350 0.29 +1.8 356,786 - HMPREF1078_RS14350 0.29 +0.3 356,796 - HMPREF1078_RS14350 0.30 +1.2 356,901 - HMPREF1078_RS14350 0.44 +1.8 356,927 + HMPREF1078_RS14350 0.47 +0.5 356,928 - HMPREF1078_RS14350 0.47 +0.2 356,964 + HMPREF1078_RS14350 0.52 -0.3 356,965 - HMPREF1078_RS14350 0.52 +2.8 356,967 + HMPREF1078_RS14350 0.52 +2.8 357,028 + HMPREF1078_RS14350 0.60 +0.9 357,028 + HMPREF1078_RS14350 0.60 +0.2 357,063 + HMPREF1078_RS14350 0.64 +0.8 357,063 + HMPREF1078_RS14350 0.64 -0.5 357,064 - HMPREF1078_RS14350 0.65 -0.4 357,064 - HMPREF1078_RS14350 0.65 +0.9 357,064 - HMPREF1078_RS14350 0.65 +0.8 357,064 - HMPREF1078_RS14350 0.65 -0.9 357,078 + HMPREF1078_RS14350 0.66 +0.2 357,078 + HMPREF1078_RS14350 0.66 -0.5 357,078 + HMPREF1078_RS14350 0.66 +0.7 357,083 - HMPREF1078_RS14350 0.67 -1.9 357,112 - HMPREF1078_RS14350 0.71 -1.7 357,114 + HMPREF1078_RS14350 0.71 -0.2 357,124 + HMPREF1078_RS14350 0.72 -0.5 357,144 + HMPREF1078_RS14350 0.75 -0.3 357,174 - HMPREF1078_RS14350 0.79 +0.9 357,182 + HMPREF1078_RS14350 0.80 +0.1 357,182 + HMPREF1078_RS14350 0.80 +1.1 357,213 + HMPREF1078_RS14350 0.84 +2.1 357,216 - HMPREF1078_RS14350 0.84 -0.0 357,258 + HMPREF1078_RS14350 0.90 -2.6 357,263 - -0.4 357,263 - +1.0 357,263 - -2.5 357,263 - +1.3 357,317 - -4.6 357,340 - -0.0 357,340 - +0.8 357,355 - -0.1 357,355 - -1.1 357,355 - -1.9 357,374 + -0.8 357,374 + +1.2 357,374 + -2.3 357,457 - HMPREF1078_RS14355 0.14 +3.0 357,468 - HMPREF1078_RS14355 0.16 -1.6 357,536 + HMPREF1078_RS14355 0.30 -0.4 357,584 - HMPREF1078_RS14355 0.40 -0.0 357,584 - HMPREF1078_RS14355 0.40 -1.4 357,800 - HMPREF1078_RS14355 0.85 -0.3 357,800 - HMPREF1078_RS14355 0.85 +1.2 357,800 - HMPREF1078_RS14355 0.85 +1.3 357,800 - HMPREF1078_RS14355 0.85 +1.3 357,827 + +1.0 357,840 - -1.7 357,879 - -0.1 357,903 - +0.6 357,907 + -0.3 357,907 + -0.6 357,908 - -1.0 357,912 + +2.3 357,913 - +0.7 357,921 + +0.2 357,922 - +1.2 357,922 - -1.0 357,923 + -0.4 357,935 + +0.6 357,935 + -1.1 357,937 + -1.3 357,998 - +0.7 357,999 + -0.8 357,999 + +0.2 358,000 - -0.3 358,000 - +1.6 358,000 - -0.2 358,007 - +0.7 358,011 + +0.7 358,012 - -0.4 358,014 - +1.2 358,199 + HMPREF1078_RS14360 0.40 +0.6 358,418 + -2.9 358,418 + +1.3 358,418 + +0.0 358,419 - -0.1 358,459 - -1.1 358,477 - -1.4 358,489 - -0.4 358,530 - +1.2 358,531 + +1.0 358,531 + -3.7 358,532 - +0.0 358,560 + -1.3 358,561 - +0.1 358,657 + +1.9 358,657 + -0.1 358,657 + -3.2 358,658 - +0.8 358,658 - -0.7 358,658 - -0.4 358,658 - -0.1 358,658 - -1.4 358,658 - -0.9 358,680 + +0.6 358,734 - +1.3 358,781 - -0.2 358,784 + -0.8 358,785 - -0.3
Or see this region's nucleotide sequence