Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS14285

Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1078_RS14280 and HMPREF1078_RS14285 are separated by 85 nucleotidesHMPREF1078_RS14285 and HMPREF1078_RS14290 are separated by 219 nucleotides HMPREF1078_RS14280: HMPREF1078_RS14280 - alkaline phosphatase family protein, at 333,754 to 334,701 _RS14280 HMPREF1078_RS14285: HMPREF1078_RS14285 - IMP dehydrogenase, at 334,787 to 336,280 _RS14285 HMPREF1078_RS14290: HMPREF1078_RS14290 - pirin family protein, at 336,500 to 337,207 _RS14290 Position (kb) 334 335 336 337Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 333.809 kb on + strandat 333.903 kb on + strand, within HMPREF1078_RS14280at 333.903 kb on + strand, within HMPREF1078_RS14280at 333.904 kb on - strand, within HMPREF1078_RS14280at 333.993 kb on + strand, within HMPREF1078_RS14280at 334.111 kb on - strand, within HMPREF1078_RS14280at 334.127 kb on - strand, within HMPREF1078_RS14280at 334.127 kb on - strand, within HMPREF1078_RS14280at 334.216 kb on + strand, within HMPREF1078_RS14280at 334.218 kb on + strand, within HMPREF1078_RS14280at 334.246 kb on + strand, within HMPREF1078_RS14280at 334.264 kb on + strand, within HMPREF1078_RS14280at 334.264 kb on + strand, within HMPREF1078_RS14280at 334.265 kb on - strand, within HMPREF1078_RS14280at 334.265 kb on - strand, within HMPREF1078_RS14280at 334.328 kb on + strand, within HMPREF1078_RS14280at 334.371 kb on + strand, within HMPREF1078_RS14280at 334.371 kb on + strand, within HMPREF1078_RS14280at 334.392 kb on + strand, within HMPREF1078_RS14280at 334.392 kb on + strand, within HMPREF1078_RS14280at 334.392 kb on + strand, within HMPREF1078_RS14280at 334.393 kb on - strand, within HMPREF1078_RS14280at 334.463 kb on - strand, within HMPREF1078_RS14280at 334.463 kb on - strand, within HMPREF1078_RS14280at 334.463 kb on - strand, within HMPREF1078_RS14280at 334.464 kb on + strand, within HMPREF1078_RS14280at 334.464 kb on + strand, within HMPREF1078_RS14280at 334.465 kb on - strand, within HMPREF1078_RS14280at 334.465 kb on - strand, within HMPREF1078_RS14280at 334.531 kb on - strand, within HMPREF1078_RS14280at 334.575 kb on - strand, within HMPREF1078_RS14280at 334.617 kb on + strandat 334.626 kb on + strandat 334.626 kb on + strandat 334.627 kb on - strandat 334.627 kb on - strandat 334.679 kb on + strandat 334.680 kb on - strandat 334.682 kb on + strandat 334.683 kb on - strandat 334.683 kb on - strandat 334.683 kb on - strandat 334.692 kb on - strandat 334.699 kb on + strandat 334.706 kb on + strandat 334.707 kb on - strandat 334.717 kb on - strandat 334.726 kb on + strandat 334.738 kb on - strandat 334.766 kb on + strandat 334.776 kb on + strandat 334.891 kb on + strandat 334.891 kb on + strandat 334.966 kb on - strand, within HMPREF1078_RS14285at 334.974 kb on + strand, within HMPREF1078_RS14285at 334.974 kb on + strand, within HMPREF1078_RS14285at 334.975 kb on - strand, within HMPREF1078_RS14285at 334.975 kb on - strand, within HMPREF1078_RS14285at 334.975 kb on - strand, within HMPREF1078_RS14285at 334.975 kb on - strand, within HMPREF1078_RS14285at 334.975 kb on - strand, within HMPREF1078_RS14285at 334.975 kb on - strand, within HMPREF1078_RS14285at 335.000 kb on - strand, within HMPREF1078_RS14285at 335.087 kb on - strand, within HMPREF1078_RS14285at 335.134 kb on - strand, within HMPREF1078_RS14285at 335.134 kb on - strand, within HMPREF1078_RS14285at 335.187 kb on + strand, within HMPREF1078_RS14285at 335.188 kb on - strand, within HMPREF1078_RS14285at 335.226 kb on + strand, within HMPREF1078_RS14285at 335.226 kb on + strand, within HMPREF1078_RS14285at 335.227 kb on - strand, within HMPREF1078_RS14285at 335.227 kb on - strand, within HMPREF1078_RS14285at 335.227 kb on - strand, within HMPREF1078_RS14285at 335.230 kb on + strand, within HMPREF1078_RS14285at 335.230 kb on + strand, within HMPREF1078_RS14285at 335.230 kb on + strand, within HMPREF1078_RS14285at 335.231 kb on - strand, within HMPREF1078_RS14285at 335.511 kb on - strand, within HMPREF1078_RS14285at 335.511 kb on - strand, within HMPREF1078_RS14285at 335.511 kb on - strand, within HMPREF1078_RS14285at 335.551 kb on + strand, within HMPREF1078_RS14285at 335.554 kb on - strand, within HMPREF1078_RS14285at 335.580 kb on - strand, within HMPREF1078_RS14285at 335.613 kb on + strand, within HMPREF1078_RS14285at 335.658 kb on + strand, within HMPREF1078_RS14285at 335.894 kb on - strand, within HMPREF1078_RS14285at 335.912 kb on + strand, within HMPREF1078_RS14285at 335.924 kb on + strand, within HMPREF1078_RS14285at 336.025 kb on + strand, within HMPREF1078_RS14285at 336.218 kb on + strandat 336.237 kb on + strandat 336.257 kb on + strandat 336.257 kb on + strandat 336.258 kb on - strandat 336.258 kb on - strandat 336.258 kb on - strandat 336.288 kb on - strandat 336.289 kb on + strandat 336.307 kb on - strandat 336.337 kb on + strandat 336.337 kb on + strandat 336.337 kb on + strandat 336.345 kb on - strandat 336.469 kb on + strandat 336.470 kb on - strandat 336.470 kb on - strandat 336.496 kb on - strandat 336.526 kb on - strandat 336.574 kb on + strand, within HMPREF1078_RS14290at 336.588 kb on - strand, within HMPREF1078_RS14290at 336.591 kb on - strand, within HMPREF1078_RS14290at 336.667 kb on + strand, within HMPREF1078_RS14290at 336.679 kb on + strand, within HMPREF1078_RS14290at 336.679 kb on + strand, within HMPREF1078_RS14290at 336.679 kb on + strand, within HMPREF1078_RS14290at 336.821 kb on - strand, within HMPREF1078_RS14290at 336.891 kb on - strand, within HMPREF1078_RS14290at 336.892 kb on + strand, within HMPREF1078_RS14290at 336.892 kb on + strand, within HMPREF1078_RS14290at 336.893 kb on - strand, within HMPREF1078_RS14290at 336.893 kb on - strand, within HMPREF1078_RS14290at 336.899 kb on + strand, within HMPREF1078_RS14290at 336.899 kb on + strand, within HMPREF1078_RS14290at 336.899 kb on + strand, within HMPREF1078_RS14290at 336.899 kb on + strand, within HMPREF1078_RS14290at 336.900 kb on - strand, within HMPREF1078_RS14290at 336.900 kb on - strand, within HMPREF1078_RS14290at 337.003 kb on + strand, within HMPREF1078_RS14290at 337.004 kb on - strand, within HMPREF1078_RS14290at 337.031 kb on + strand, within HMPREF1078_RS14290at 337.155 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day4
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333,809 + +1.5
333,903 + HMPREF1078_RS14280 0.16 +0.8
333,903 + HMPREF1078_RS14280 0.16 -1.0
333,904 - HMPREF1078_RS14280 0.16 +0.2
333,993 + HMPREF1078_RS14280 0.25 +1.9
334,111 - HMPREF1078_RS14280 0.38 -1.3
334,127 - HMPREF1078_RS14280 0.39 +0.1
334,127 - HMPREF1078_RS14280 0.39 +1.4
334,216 + HMPREF1078_RS14280 0.49 -0.3
334,218 + HMPREF1078_RS14280 0.49 +0.6
334,246 + HMPREF1078_RS14280 0.52 -0.2
334,264 + HMPREF1078_RS14280 0.54 +0.3
334,264 + HMPREF1078_RS14280 0.54 -0.4
334,265 - HMPREF1078_RS14280 0.54 -1.6
334,265 - HMPREF1078_RS14280 0.54 +0.8
334,328 + HMPREF1078_RS14280 0.61 -0.9
334,371 + HMPREF1078_RS14280 0.65 +1.4
334,371 + HMPREF1078_RS14280 0.65 -2.4
334,392 + HMPREF1078_RS14280 0.67 -0.8
334,392 + HMPREF1078_RS14280 0.67 +0.5
334,392 + HMPREF1078_RS14280 0.67 +1.2
334,393 - HMPREF1078_RS14280 0.67 +0.6
334,463 - HMPREF1078_RS14280 0.75 +0.2
334,463 - HMPREF1078_RS14280 0.75 -0.6
334,463 - HMPREF1078_RS14280 0.75 +0.0
334,464 + HMPREF1078_RS14280 0.75 -1.1
334,464 + HMPREF1078_RS14280 0.75 -1.3
334,465 - HMPREF1078_RS14280 0.75 -1.3
334,465 - HMPREF1078_RS14280 0.75 -1.5
334,531 - HMPREF1078_RS14280 0.82 -1.6
334,575 - HMPREF1078_RS14280 0.87 -2.4
334,617 + +1.9
334,626 + +1.4
334,626 + +1.4
334,627 - +0.2
334,627 - -0.1
334,679 + +0.1
334,680 - -0.5
334,682 + -0.5
334,683 - +0.2
334,683 - +0.1
334,683 - +0.2
334,692 - +0.9
334,699 + +0.9
334,706 + -3.0
334,707 - +0.3
334,717 - -0.1
334,726 + -2.5
334,738 - +0.9
334,766 + +0.2
334,776 + -0.8
334,891 + -2.0
334,891 + -0.8
334,966 - HMPREF1078_RS14285 0.12 -1.4
334,974 + HMPREF1078_RS14285 0.13 -3.4
334,974 + HMPREF1078_RS14285 0.13 +0.2
334,975 - HMPREF1078_RS14285 0.13 -2.3
334,975 - HMPREF1078_RS14285 0.13 -1.8
334,975 - HMPREF1078_RS14285 0.13 -0.8
334,975 - HMPREF1078_RS14285 0.13 -0.4
334,975 - HMPREF1078_RS14285 0.13 -2.1
334,975 - HMPREF1078_RS14285 0.13 -0.8
335,000 - HMPREF1078_RS14285 0.14 -2.0
335,087 - HMPREF1078_RS14285 0.20 +2.2
335,134 - HMPREF1078_RS14285 0.23 +0.2
335,134 - HMPREF1078_RS14285 0.23 -1.8
335,187 + HMPREF1078_RS14285 0.27 -1.1
335,188 - HMPREF1078_RS14285 0.27 -1.4
335,226 + HMPREF1078_RS14285 0.29 +1.2
335,226 + HMPREF1078_RS14285 0.29 -0.4
335,227 - HMPREF1078_RS14285 0.29 -1.6
335,227 - HMPREF1078_RS14285 0.29 -0.6
335,227 - HMPREF1078_RS14285 0.29 -1.1
335,230 + HMPREF1078_RS14285 0.30 -2.4
335,230 + HMPREF1078_RS14285 0.30 -0.8
335,230 + HMPREF1078_RS14285 0.30 -1.6
335,231 - HMPREF1078_RS14285 0.30 +0.2
335,511 - HMPREF1078_RS14285 0.48 -0.4
335,511 - HMPREF1078_RS14285 0.48 -1.1
335,511 - HMPREF1078_RS14285 0.48 -0.8
335,551 + HMPREF1078_RS14285 0.51 -2.0
335,554 - HMPREF1078_RS14285 0.51 -2.5
335,580 - HMPREF1078_RS14285 0.53 -1.6
335,613 + HMPREF1078_RS14285 0.55 -0.1
335,658 + HMPREF1078_RS14285 0.58 -1.1
335,894 - HMPREF1078_RS14285 0.74 -0.4
335,912 + HMPREF1078_RS14285 0.75 +0.2
335,924 + HMPREF1078_RS14285 0.76 -0.8
336,025 + HMPREF1078_RS14285 0.83 +1.2
336,218 + -1.1
336,237 + -0.4
336,257 + -2.3
336,257 + +1.2
336,258 - -1.8
336,258 - +0.2
336,258 - -0.8
336,288 - -0.4
336,289 + -1.4
336,307 - -0.3
336,337 + -2.6
336,337 + -2.2
336,337 + -1.8
336,345 - +0.2
336,469 + -0.5
336,470 - -0.4
336,470 - -1.2
336,496 - -2.5
336,526 - +0.4
336,574 + HMPREF1078_RS14290 0.10 -3.1
336,588 - HMPREF1078_RS14290 0.12 +1.8
336,591 - HMPREF1078_RS14290 0.13 +1.1
336,667 + HMPREF1078_RS14290 0.24 +1.3
336,679 + HMPREF1078_RS14290 0.25 -0.7
336,679 + HMPREF1078_RS14290 0.25 +1.1
336,679 + HMPREF1078_RS14290 0.25 +0.5
336,821 - HMPREF1078_RS14290 0.45 +0.0
336,891 - HMPREF1078_RS14290 0.55 -2.4
336,892 + HMPREF1078_RS14290 0.55 -2.0
336,892 + HMPREF1078_RS14290 0.55 +0.1
336,893 - HMPREF1078_RS14290 0.56 -1.0
336,893 - HMPREF1078_RS14290 0.56 -0.6
336,899 + HMPREF1078_RS14290 0.56 -0.8
336,899 + HMPREF1078_RS14290 0.56 -0.1
336,899 + HMPREF1078_RS14290 0.56 +0.5
336,899 + HMPREF1078_RS14290 0.56 +1.5
336,900 - HMPREF1078_RS14290 0.56 +1.1
336,900 - HMPREF1078_RS14290 0.56 -3.0
337,003 + HMPREF1078_RS14290 0.71 -0.4
337,004 - HMPREF1078_RS14290 0.71 -0.5
337,031 + HMPREF1078_RS14290 0.75 -0.2
337,155 + +2.2

Or see this region's nucleotide sequence