Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS14200 and HMPREF1078_RS14205 are separated by 21 nucleotides HMPREF1078_RS14205 and HMPREF1078_RS14210 are separated by 11 nucleotides HMPREF1078_RS14210 and HMPREF1078_RS14215 are separated by 21 nucleotides
HMPREF1078_RS14200: HMPREF1078_RS14200 - shikimate dehydrogenase, at 312,105 to 312,845
_RS14200
HMPREF1078_RS14205: HMPREF1078_RS14205 - bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE, at 312,867 to 313,634
_RS14205
HMPREF1078_RS14210: HMPREF1078_RS14210 - phosphoribosylaminoimidazolesuccinocarboxamide synthase, at 313,646 to 314,593
_RS14210
HMPREF1078_RS14215: HMPREF1078_RS14215 - PhoH family protein, at 314,615 to 315,637
_RS14215
Position (kb) 313
314
315 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 312.658 kb on + strand, within HMPREF1078_RS14200 at 312.706 kb on - strand, within HMPREF1078_RS14200 at 312.790 kb on + strand at 312.826 kb on - strand at 312.826 kb on - strand at 312.828 kb on + strand at 312.869 kb on - strand at 312.869 kb on - strand at 312.869 kb on - strand at 312.869 kb on - strand at 312.870 kb on + strand at 312.871 kb on - strand at 312.871 kb on - strand at 312.964 kb on - strand, within HMPREF1078_RS14205 at 313.034 kb on - strand, within HMPREF1078_RS14205 at 313.041 kb on - strand, within HMPREF1078_RS14205 at 313.191 kb on - strand, within HMPREF1078_RS14205 at 313.191 kb on - strand, within HMPREF1078_RS14205 at 313.200 kb on + strand, within HMPREF1078_RS14205 at 313.495 kb on - strand, within HMPREF1078_RS14205 at 313.538 kb on - strand, within HMPREF1078_RS14205 at 313.538 kb on - strand, within HMPREF1078_RS14205 at 313.538 kb on - strand, within HMPREF1078_RS14205 at 313.625 kb on - strand at 313.740 kb on + strand at 313.752 kb on + strand, within HMPREF1078_RS14210 at 313.753 kb on - strand, within HMPREF1078_RS14210 at 313.753 kb on - strand, within HMPREF1078_RS14210 at 313.773 kb on - strand, within HMPREF1078_RS14210 at 314.252 kb on - strand, within HMPREF1078_RS14210 at 314.430 kb on + strand, within HMPREF1078_RS14210 at 314.514 kb on + strand at 314.515 kb on - strand at 314.515 kb on - strand at 314.515 kb on - strand at 314.515 kb on - strand at 314.530 kb on + strand at 314.539 kb on - strand at 314.539 kb on - strand at 314.594 kb on - strand at 314.594 kb on - strand at 314.594 kb on - strand at 314.639 kb on - strand at 314.734 kb on + strand, within HMPREF1078_RS14215 at 314.734 kb on + strand, within HMPREF1078_RS14215 at 314.735 kb on - strand, within HMPREF1078_RS14215 at 314.735 kb on - strand, within HMPREF1078_RS14215 at 315.036 kb on + strand, within HMPREF1078_RS14215 at 315.037 kb on - strand, within HMPREF1078_RS14215 at 315.037 kb on - strand, within HMPREF1078_RS14215 at 315.082 kb on - strand, within HMPREF1078_RS14215 at 315.082 kb on - strand, within HMPREF1078_RS14215 at 315.200 kb on - strand, within HMPREF1078_RS14215 at 315.239 kb on - strand, within HMPREF1078_RS14215 at 315.500 kb on - strand, within HMPREF1078_RS14215 at 315.536 kb on + strand at 315.537 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day4 remove 312,658 + HMPREF1078_RS14200 0.75 -1.4 312,706 - HMPREF1078_RS14200 0.81 -2.1 312,790 + +1.2 312,826 - -0.1 312,826 - -0.8 312,828 + -1.7 312,869 - -0.1 312,869 - +0.3 312,869 - -1.8 312,869 - -0.7 312,870 + +0.2 312,871 - -1.0 312,871 - +1.5 312,964 - HMPREF1078_RS14205 0.13 +1.2 313,034 - HMPREF1078_RS14205 0.22 -2.3 313,041 - HMPREF1078_RS14205 0.23 +0.2 313,191 - HMPREF1078_RS14205 0.42 -1.1 313,191 - HMPREF1078_RS14205 0.42 +0.9 313,200 + HMPREF1078_RS14205 0.43 +2.2 313,495 - HMPREF1078_RS14205 0.82 +3.2 313,538 - HMPREF1078_RS14205 0.87 -0.8 313,538 - HMPREF1078_RS14205 0.87 -0.8 313,538 - HMPREF1078_RS14205 0.87 -1.1 313,625 - -1.8 313,740 + +0.2 313,752 + HMPREF1078_RS14210 0.11 +1.2 313,753 - HMPREF1078_RS14210 0.11 -1.4 313,753 - HMPREF1078_RS14210 0.11 -1.6 313,773 - HMPREF1078_RS14210 0.13 -2.8 314,252 - HMPREF1078_RS14210 0.64 -2.8 314,430 + HMPREF1078_RS14210 0.83 -0.8 314,514 + +1.2 314,515 - -2.1 314,515 - +0.2 314,515 - +1.2 314,515 - +1.2 314,530 + +1.2 314,539 - -2.0 314,539 - -0.4 314,594 - -2.4 314,594 - -0.4 314,594 - -0.4 314,639 - -0.7 314,734 + HMPREF1078_RS14215 0.12 +0.2 314,734 + HMPREF1078_RS14215 0.12 -0.4 314,735 - HMPREF1078_RS14215 0.12 -1.4 314,735 - HMPREF1078_RS14215 0.12 -0.3 315,036 + HMPREF1078_RS14215 0.41 -0.8 315,037 - HMPREF1078_RS14215 0.41 -0.2 315,037 - HMPREF1078_RS14215 0.41 -1.5 315,082 - HMPREF1078_RS14215 0.46 +2.2 315,082 - HMPREF1078_RS14215 0.46 +0.6 315,200 - HMPREF1078_RS14215 0.57 -1.5 315,239 - HMPREF1078_RS14215 0.61 -0.8 315,500 - HMPREF1078_RS14215 0.87 -0.4 315,536 + +0.2 315,537 - +0.1
Or see this region's nucleotide sequence