Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS14075 and HMPREF1078_RS14080 are separated by 127 nucleotides HMPREF1078_RS14080 and HMPREF1078_RS14085 are separated by 10 nucleotides HMPREF1078_RS14085 and HMPREF1078_RS14090 are separated by 4 nucleotides HMPREF1078_RS14090 and HMPREF1078_RS14095 are separated by 93 nucleotides
HMPREF1078_RS14075: HMPREF1078_RS14075 - glycosyltransferase, at 277,879 to 279,537
_RS14075
HMPREF1078_RS14080: HMPREF1078_RS14080 - hypothetical protein, at 279,665 to 279,949
_RS14080
HMPREF1078_RS14085: HMPREF1078_RS14085 - lysophospholipid acyltransferase family protein, at 279,960 to 280,505
_RS14085
HMPREF1078_RS14090: HMPREF1078_RS14090 - amidohydrolase, at 280,510 to 281,292
_RS14090
HMPREF1078_RS14095: HMPREF1078_RS14095 - molecular chaperone DnaK, at 281,386 to 283,302
_RS14095
Position (kb) 279
280
281 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 279.024 kb on - strand, within HMPREF1078_RS14075 at 279.117 kb on + strand, within HMPREF1078_RS14075 at 279.117 kb on + strand, within HMPREF1078_RS14075 at 279.117 kb on + strand, within HMPREF1078_RS14075 at 279.118 kb on - strand, within HMPREF1078_RS14075 at 279.118 kb on - strand, within HMPREF1078_RS14075 at 279.118 kb on - strand, within HMPREF1078_RS14075 at 279.118 kb on - strand, within HMPREF1078_RS14075 at 279.118 kb on - strand, within HMPREF1078_RS14075 at 279.122 kb on - strand, within HMPREF1078_RS14075 at 279.138 kb on + strand, within HMPREF1078_RS14075 at 279.138 kb on + strand, within HMPREF1078_RS14075 at 279.161 kb on + strand, within HMPREF1078_RS14075 at 279.162 kb on - strand, within HMPREF1078_RS14075 at 279.247 kb on + strand, within HMPREF1078_RS14075 at 279.318 kb on + strand, within HMPREF1078_RS14075 at 279.400 kb on - strand at 279.411 kb on + strand at 279.418 kb on - strand at 279.435 kb on + strand at 279.461 kb on + strand at 279.462 kb on - strand at 279.466 kb on - strand at 279.477 kb on + strand at 279.480 kb on + strand at 279.484 kb on + strand at 279.484 kb on + strand at 279.485 kb on - strand at 279.485 kb on - strand at 279.510 kb on - strand at 279.528 kb on + strand at 279.528 kb on + strand at 279.551 kb on + strand at 279.630 kb on + strand at 279.646 kb on + strand at 279.664 kb on + strand at 279.665 kb on - strand at 279.739 kb on + strand, within HMPREF1078_RS14080 at 279.747 kb on - strand, within HMPREF1078_RS14080 at 279.795 kb on + strand, within HMPREF1078_RS14080 at 279.796 kb on - strand, within HMPREF1078_RS14080 at 279.802 kb on + strand, within HMPREF1078_RS14080 at 279.872 kb on + strand, within HMPREF1078_RS14080 at 279.876 kb on - strand, within HMPREF1078_RS14080 at 279.910 kb on - strand, within HMPREF1078_RS14080 at 279.919 kb on - strand, within HMPREF1078_RS14080 at 279.955 kb on - strand at 279.973 kb on + strand at 279.977 kb on + strand at 279.977 kb on + strand at 279.978 kb on - strand at 280.045 kb on + strand, within HMPREF1078_RS14085 at 280.046 kb on - strand, within HMPREF1078_RS14085 at 280.046 kb on - strand, within HMPREF1078_RS14085 at 280.046 kb on - strand, within HMPREF1078_RS14085 at 280.098 kb on + strand, within HMPREF1078_RS14085 at 280.098 kb on + strand, within HMPREF1078_RS14085 at 280.098 kb on + strand, within HMPREF1078_RS14085 at 280.365 kb on + strand, within HMPREF1078_RS14085 at 280.374 kb on + strand, within HMPREF1078_RS14085 at 280.405 kb on + strand, within HMPREF1078_RS14085 at 280.415 kb on + strand, within HMPREF1078_RS14085 at 280.437 kb on - strand, within HMPREF1078_RS14085 at 280.507 kb on - strand at 280.533 kb on + strand at 280.533 kb on + strand at 280.548 kb on + strand at 280.625 kb on + strand, within HMPREF1078_RS14090 at 280.625 kb on + strand, within HMPREF1078_RS14090 at 280.626 kb on - strand, within HMPREF1078_RS14090 at 280.626 kb on - strand, within HMPREF1078_RS14090 at 280.647 kb on + strand, within HMPREF1078_RS14090 at 280.663 kb on - strand, within HMPREF1078_RS14090 at 280.702 kb on - strand, within HMPREF1078_RS14090 at 280.702 kb on - strand, within HMPREF1078_RS14090 at 280.704 kb on + strand, within HMPREF1078_RS14090 at 280.704 kb on + strand, within HMPREF1078_RS14090 at 280.704 kb on + strand, within HMPREF1078_RS14090 at 280.704 kb on + strand, within HMPREF1078_RS14090 at 280.704 kb on + strand, within HMPREF1078_RS14090 at 280.705 kb on - strand, within HMPREF1078_RS14090 at 280.705 kb on - strand, within HMPREF1078_RS14090 at 280.711 kb on - strand, within HMPREF1078_RS14090 at 280.713 kb on + strand, within HMPREF1078_RS14090 at 280.713 kb on + strand, within HMPREF1078_RS14090 at 280.713 kb on + strand, within HMPREF1078_RS14090 at 280.714 kb on - strand, within HMPREF1078_RS14090 at 280.714 kb on - strand, within HMPREF1078_RS14090 at 280.715 kb on + strand, within HMPREF1078_RS14090 at 280.716 kb on - strand, within HMPREF1078_RS14090 at 280.735 kb on + strand, within HMPREF1078_RS14090 at 280.735 kb on + strand, within HMPREF1078_RS14090 at 280.737 kb on + strand, within HMPREF1078_RS14090 at 280.737 kb on + strand, within HMPREF1078_RS14090 at 280.738 kb on - strand, within HMPREF1078_RS14090 at 280.826 kb on - strand, within HMPREF1078_RS14090 at 280.826 kb on - strand, within HMPREF1078_RS14090 at 280.826 kb on - strand, within HMPREF1078_RS14090 at 280.831 kb on + strand, within HMPREF1078_RS14090 at 280.904 kb on + strand, within HMPREF1078_RS14090 at 280.909 kb on + strand, within HMPREF1078_RS14090 at 280.910 kb on - strand, within HMPREF1078_RS14090 at 280.910 kb on - strand, within HMPREF1078_RS14090 at 280.911 kb on + strand, within HMPREF1078_RS14090 at 280.911 kb on + strand, within HMPREF1078_RS14090 at 280.911 kb on + strand, within HMPREF1078_RS14090 at 280.912 kb on - strand, within HMPREF1078_RS14090 at 280.912 kb on - strand, within HMPREF1078_RS14090 at 280.924 kb on - strand, within HMPREF1078_RS14090 at 280.943 kb on - strand, within HMPREF1078_RS14090 at 280.987 kb on + strand, within HMPREF1078_RS14090 at 280.987 kb on + strand, within HMPREF1078_RS14090 at 280.987 kb on + strand, within HMPREF1078_RS14090 at 280.987 kb on + strand, within HMPREF1078_RS14090 at 280.988 kb on - strand, within HMPREF1078_RS14090 at 280.988 kb on - strand, within HMPREF1078_RS14090 at 281.002 kb on + strand, within HMPREF1078_RS14090 at 281.002 kb on + strand, within HMPREF1078_RS14090 at 281.003 kb on - strand, within HMPREF1078_RS14090 at 281.003 kb on - strand, within HMPREF1078_RS14090 at 281.036 kb on + strand, within HMPREF1078_RS14090 at 281.075 kb on - strand, within HMPREF1078_RS14090 at 281.080 kb on + strand, within HMPREF1078_RS14090 at 281.211 kb on + strand, within HMPREF1078_RS14090 at 281.211 kb on + strand, within HMPREF1078_RS14090 at 281.211 kb on + strand, within HMPREF1078_RS14090 at 281.211 kb on + strand, within HMPREF1078_RS14090 at 281.212 kb on - strand, within HMPREF1078_RS14090 at 281.212 kb on - strand, within HMPREF1078_RS14090 at 281.212 kb on - strand, within HMPREF1078_RS14090 at 281.240 kb on + strand at 281.241 kb on - strand at 281.382 kb on - strand at 281.387 kb on + strand at 281.388 kb on - strand at 281.417 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day4 remove 279,024 - HMPREF1078_RS14075 0.69 +0.5 279,117 + HMPREF1078_RS14075 0.75 -1.8 279,117 + HMPREF1078_RS14075 0.75 -0.4 279,117 + HMPREF1078_RS14075 0.75 +0.2 279,118 - HMPREF1078_RS14075 0.75 -1.9 279,118 - HMPREF1078_RS14075 0.75 -0.8 279,118 - HMPREF1078_RS14075 0.75 +0.3 279,118 - HMPREF1078_RS14075 0.75 -2.3 279,118 - HMPREF1078_RS14075 0.75 +0.4 279,122 - HMPREF1078_RS14075 0.75 +0.8 279,138 + HMPREF1078_RS14075 0.76 -1.1 279,138 + HMPREF1078_RS14075 0.76 -1.5 279,161 + HMPREF1078_RS14075 0.77 +0.3 279,162 - HMPREF1078_RS14075 0.77 -1.1 279,247 + HMPREF1078_RS14075 0.82 -1.6 279,318 + HMPREF1078_RS14075 0.87 -0.3 279,400 - -0.5 279,411 + -0.1 279,418 - -0.1 279,435 + -0.6 279,461 + +1.8 279,462 - -1.0 279,466 - -1.8 279,477 + -3.2 279,480 + +0.2 279,484 + +1.6 279,484 + -2.0 279,485 - -0.1 279,485 - -0.1 279,510 - +1.5 279,528 + +1.3 279,528 + -0.0 279,551 + -0.1 279,630 + +1.3 279,646 + +0.3 279,664 + +3.0 279,665 - -2.5 279,739 + HMPREF1078_RS14080 0.26 +1.5 279,747 - HMPREF1078_RS14080 0.29 -1.1 279,795 + HMPREF1078_RS14080 0.46 -0.6 279,796 - HMPREF1078_RS14080 0.46 -2.0 279,802 + HMPREF1078_RS14080 0.48 +0.3 279,872 + HMPREF1078_RS14080 0.73 -1.0 279,876 - HMPREF1078_RS14080 0.74 -1.4 279,910 - HMPREF1078_RS14080 0.86 -2.4 279,919 - HMPREF1078_RS14080 0.89 -3.5 279,955 - -2.0 279,973 + -0.8 279,977 + -2.3 279,977 + -1.4 279,978 - -0.4 280,045 + HMPREF1078_RS14085 0.16 -2.3 280,046 - HMPREF1078_RS14085 0.16 -2.1 280,046 - HMPREF1078_RS14085 0.16 +0.2 280,046 - HMPREF1078_RS14085 0.16 -2.8 280,098 + HMPREF1078_RS14085 0.25 -1.4 280,098 + HMPREF1078_RS14085 0.25 -1.4 280,098 + HMPREF1078_RS14085 0.25 -2.3 280,365 + HMPREF1078_RS14085 0.74 -2.5 280,374 + HMPREF1078_RS14085 0.76 -0.4 280,405 + HMPREF1078_RS14085 0.82 -1.6 280,415 + HMPREF1078_RS14085 0.83 -2.1 280,437 - HMPREF1078_RS14085 0.87 -3.0 280,507 - +0.2 280,533 + +1.3 280,533 + -3.1 280,548 + +0.3 280,625 + HMPREF1078_RS14090 0.15 +0.8 280,625 + HMPREF1078_RS14090 0.15 +1.4 280,626 - HMPREF1078_RS14090 0.15 -0.2 280,626 - HMPREF1078_RS14090 0.15 +0.0 280,647 + HMPREF1078_RS14090 0.17 +1.6 280,663 - HMPREF1078_RS14090 0.20 -2.0 280,702 - HMPREF1078_RS14090 0.25 -0.0 280,702 - HMPREF1078_RS14090 0.25 -1.1 280,704 + HMPREF1078_RS14090 0.25 +1.8 280,704 + HMPREF1078_RS14090 0.25 +0.5 280,704 + HMPREF1078_RS14090 0.25 -0.2 280,704 + HMPREF1078_RS14090 0.25 -0.7 280,704 + HMPREF1078_RS14090 0.25 +0.2 280,705 - HMPREF1078_RS14090 0.25 +0.8 280,705 - HMPREF1078_RS14090 0.25 -1.8 280,711 - HMPREF1078_RS14090 0.26 +0.7 280,713 + HMPREF1078_RS14090 0.26 -0.4 280,713 + HMPREF1078_RS14090 0.26 -1.5 280,713 + HMPREF1078_RS14090 0.26 +1.2 280,714 - HMPREF1078_RS14090 0.26 +1.8 280,714 - HMPREF1078_RS14090 0.26 -2.4 280,715 + HMPREF1078_RS14090 0.26 -0.8 280,716 - HMPREF1078_RS14090 0.26 -0.6 280,735 + HMPREF1078_RS14090 0.29 -1.0 280,735 + HMPREF1078_RS14090 0.29 +1.1 280,737 + HMPREF1078_RS14090 0.29 -2.7 280,737 + HMPREF1078_RS14090 0.29 +0.7 280,738 - HMPREF1078_RS14090 0.29 +0.3 280,826 - HMPREF1078_RS14090 0.40 -0.2 280,826 - HMPREF1078_RS14090 0.40 +0.7 280,826 - HMPREF1078_RS14090 0.40 -1.4 280,831 + HMPREF1078_RS14090 0.41 +0.6 280,904 + HMPREF1078_RS14090 0.50 -0.8 280,909 + HMPREF1078_RS14090 0.51 -0.3 280,910 - HMPREF1078_RS14090 0.51 +0.8 280,910 - HMPREF1078_RS14090 0.51 -1.7 280,911 + HMPREF1078_RS14090 0.51 +0.3 280,911 + HMPREF1078_RS14090 0.51 +0.7 280,911 + HMPREF1078_RS14090 0.51 -1.8 280,912 - HMPREF1078_RS14090 0.51 -0.2 280,912 - HMPREF1078_RS14090 0.51 +0.7 280,924 - HMPREF1078_RS14090 0.53 -0.4 280,943 - HMPREF1078_RS14090 0.55 -0.6 280,987 + HMPREF1078_RS14090 0.61 +0.1 280,987 + HMPREF1078_RS14090 0.61 +1.7 280,987 + HMPREF1078_RS14090 0.61 -0.4 280,987 + HMPREF1078_RS14090 0.61 +1.2 280,988 - HMPREF1078_RS14090 0.61 +0.9 280,988 - HMPREF1078_RS14090 0.61 +1.4 281,002 + HMPREF1078_RS14090 0.63 -1.1 281,002 + HMPREF1078_RS14090 0.63 -1.7 281,003 - HMPREF1078_RS14090 0.63 -0.3 281,003 - HMPREF1078_RS14090 0.63 +0.9 281,036 + HMPREF1078_RS14090 0.67 -0.7 281,075 - HMPREF1078_RS14090 0.72 +1.2 281,080 + HMPREF1078_RS14090 0.73 -1.8 281,211 + HMPREF1078_RS14090 0.90 -0.4 281,211 + HMPREF1078_RS14090 0.90 +0.8 281,211 + HMPREF1078_RS14090 0.90 +0.6 281,211 + HMPREF1078_RS14090 0.90 +0.9 281,212 - HMPREF1078_RS14090 0.90 -1.5 281,212 - HMPREF1078_RS14090 0.90 -0.1 281,212 - HMPREF1078_RS14090 0.90 -0.4 281,240 + -0.0 281,241 - -2.3 281,382 - +0.9 281,387 + +0.1 281,388 - -0.4 281,417 - -1.1
Or see this region's nucleotide sequence