Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS13685 and HMPREF1078_RS13690 are separated by 0 nucleotides HMPREF1078_RS13690 and HMPREF1078_RS13695 overlap by 4 nucleotides HMPREF1078_RS13695 and HMPREF1078_RS13700 are separated by 193 nucleotides
HMPREF1078_RS13685: HMPREF1078_RS13685 - class I SAM-dependent rRNA methyltransferase, at 188,702 to 189,886
_RS13685
HMPREF1078_RS13690: HMPREF1078_RS13690 - 3'-5' exonuclease, at 189,887 to 190,468
_RS13690
HMPREF1078_RS13695: HMPREF1078_RS13695 - DUF5063 domain-containing protein, at 190,465 to 191,010
_RS13695
HMPREF1078_RS13700: HMPREF1078_RS13700 - DNA translocase FtsK, at 191,204 to 193,702
_RS13700
Position (kb) 189
190
191 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 188.893 kb on + strand, within HMPREF1078_RS13685 at 188.893 kb on + strand, within HMPREF1078_RS13685 at 188.894 kb on - strand, within HMPREF1078_RS13685 at 188.894 kb on - strand, within HMPREF1078_RS13685 at 189.013 kb on - strand, within HMPREF1078_RS13685 at 189.036 kb on + strand, within HMPREF1078_RS13685 at 189.174 kb on + strand, within HMPREF1078_RS13685 at 189.174 kb on + strand, within HMPREF1078_RS13685 at 189.174 kb on + strand, within HMPREF1078_RS13685 at 189.175 kb on - strand, within HMPREF1078_RS13685 at 189.175 kb on - strand, within HMPREF1078_RS13685 at 189.195 kb on + strand, within HMPREF1078_RS13685 at 189.361 kb on - strand, within HMPREF1078_RS13685 at 189.377 kb on + strand, within HMPREF1078_RS13685 at 189.390 kb on + strand, within HMPREF1078_RS13685 at 189.415 kb on - strand, within HMPREF1078_RS13685 at 189.415 kb on - strand, within HMPREF1078_RS13685 at 189.417 kb on + strand, within HMPREF1078_RS13685 at 189.418 kb on - strand, within HMPREF1078_RS13685 at 189.418 kb on - strand, within HMPREF1078_RS13685 at 189.419 kb on + strand, within HMPREF1078_RS13685 at 189.420 kb on - strand, within HMPREF1078_RS13685 at 189.420 kb on - strand, within HMPREF1078_RS13685 at 189.420 kb on - strand, within HMPREF1078_RS13685 at 189.420 kb on - strand, within HMPREF1078_RS13685 at 189.420 kb on - strand, within HMPREF1078_RS13685 at 189.480 kb on + strand, within HMPREF1078_RS13685 at 189.525 kb on + strand, within HMPREF1078_RS13685 at 189.525 kb on + strand, within HMPREF1078_RS13685 at 189.525 kb on + strand, within HMPREF1078_RS13685 at 189.525 kb on + strand, within HMPREF1078_RS13685 at 189.525 kb on + strand, within HMPREF1078_RS13685 at 189.525 kb on + strand, within HMPREF1078_RS13685 at 189.526 kb on - strand, within HMPREF1078_RS13685 at 189.526 kb on - strand, within HMPREF1078_RS13685 at 189.526 kb on - strand, within HMPREF1078_RS13685 at 189.526 kb on - strand, within HMPREF1078_RS13685 at 189.526 kb on - strand, within HMPREF1078_RS13685 at 189.526 kb on - strand, within HMPREF1078_RS13685 at 189.553 kb on + strand, within HMPREF1078_RS13685 at 189.553 kb on + strand, within HMPREF1078_RS13685 at 189.569 kb on + strand, within HMPREF1078_RS13685 at 189.580 kb on - strand, within HMPREF1078_RS13685 at 189.580 kb on - strand, within HMPREF1078_RS13685 at 189.580 kb on - strand, within HMPREF1078_RS13685 at 189.583 kb on + strand, within HMPREF1078_RS13685 at 189.583 kb on + strand, within HMPREF1078_RS13685 at 189.583 kb on + strand, within HMPREF1078_RS13685 at 189.583 kb on + strand, within HMPREF1078_RS13685 at 189.583 kb on + strand, within HMPREF1078_RS13685 at 189.583 kb on + strand, within HMPREF1078_RS13685 at 189.583 kb on + strand, within HMPREF1078_RS13685 at 189.583 kb on + strand, within HMPREF1078_RS13685 at 189.584 kb on - strand, within HMPREF1078_RS13685 at 189.584 kb on - strand, within HMPREF1078_RS13685 at 189.584 kb on - strand, within HMPREF1078_RS13685 at 189.584 kb on - strand, within HMPREF1078_RS13685 at 189.584 kb on - strand, within HMPREF1078_RS13685 at 189.584 kb on - strand, within HMPREF1078_RS13685 at 189.584 kb on - strand, within HMPREF1078_RS13685 at 189.584 kb on - strand, within HMPREF1078_RS13685 at 189.584 kb on - strand, within HMPREF1078_RS13685 at 189.584 kb on - strand, within HMPREF1078_RS13685 at 189.584 kb on - strand, within HMPREF1078_RS13685 at 189.584 kb on - strand, within HMPREF1078_RS13685 at 189.584 kb on - strand, within HMPREF1078_RS13685 at 189.630 kb on + strand, within HMPREF1078_RS13685 at 189.630 kb on + strand, within HMPREF1078_RS13685 at 189.631 kb on - strand, within HMPREF1078_RS13685 at 189.631 kb on - strand, within HMPREF1078_RS13685 at 189.668 kb on + strand, within HMPREF1078_RS13685 at 189.689 kb on + strand, within HMPREF1078_RS13685 at 189.714 kb on - strand, within HMPREF1078_RS13685 at 189.734 kb on + strand, within HMPREF1078_RS13685 at 189.734 kb on + strand, within HMPREF1078_RS13685 at 189.735 kb on - strand, within HMPREF1078_RS13685 at 189.751 kb on + strand, within HMPREF1078_RS13685 at 189.757 kb on - strand, within HMPREF1078_RS13685 at 189.765 kb on - strand, within HMPREF1078_RS13685 at 189.837 kb on - strand at 189.874 kb on + strand at 189.875 kb on - strand at 189.888 kb on + strand at 189.888 kb on + strand at 189.889 kb on - strand at 189.889 kb on - strand at 189.909 kb on + strand at 189.910 kb on - strand at 189.910 kb on - strand at 189.911 kb on + strand at 190.032 kb on + strand, within HMPREF1078_RS13690 at 190.032 kb on + strand, within HMPREF1078_RS13690 at 190.032 kb on + strand, within HMPREF1078_RS13690 at 190.033 kb on - strand, within HMPREF1078_RS13690 at 190.035 kb on - strand, within HMPREF1078_RS13690 at 190.078 kb on - strand, within HMPREF1078_RS13690 at 190.109 kb on + strand, within HMPREF1078_RS13690 at 190.109 kb on + strand, within HMPREF1078_RS13690 at 190.109 kb on + strand, within HMPREF1078_RS13690 at 190.110 kb on - strand, within HMPREF1078_RS13690 at 190.110 kb on - strand, within HMPREF1078_RS13690 at 190.110 kb on - strand, within HMPREF1078_RS13690 at 190.110 kb on - strand, within HMPREF1078_RS13690 at 190.110 kb on - strand, within HMPREF1078_RS13690 at 190.161 kb on - strand, within HMPREF1078_RS13690 at 190.278 kb on + strand, within HMPREF1078_RS13690 at 190.278 kb on + strand, within HMPREF1078_RS13690 at 190.413 kb on - strand at 190.455 kb on + strand at 190.455 kb on + strand at 190.456 kb on - strand at 190.486 kb on + strand at 190.486 kb on + strand at 190.541 kb on - strand, within HMPREF1078_RS13695 at 190.600 kb on - strand, within HMPREF1078_RS13695 at 190.639 kb on - strand, within HMPREF1078_RS13695 at 190.677 kb on + strand, within HMPREF1078_RS13695 at 190.703 kb on + strand, within HMPREF1078_RS13695 at 190.703 kb on + strand, within HMPREF1078_RS13695 at 190.704 kb on - strand, within HMPREF1078_RS13695 at 190.734 kb on - strand, within HMPREF1078_RS13695 at 190.785 kb on - strand, within HMPREF1078_RS13695 at 190.844 kb on - strand, within HMPREF1078_RS13695 at 190.862 kb on + strand, within HMPREF1078_RS13695 at 190.862 kb on + strand, within HMPREF1078_RS13695 at 190.863 kb on - strand, within HMPREF1078_RS13695 at 190.938 kb on + strand, within HMPREF1078_RS13695 at 190.938 kb on + strand, within HMPREF1078_RS13695 at 190.961 kb on - strand at 190.985 kb on + strand at 190.985 kb on + strand at 190.986 kb on - strand at 190.986 kb on - strand at 191.013 kb on + strand at 191.013 kb on + strand at 191.013 kb on + strand at 191.014 kb on - strand at 191.017 kb on + strand at 191.018 kb on - strand at 191.025 kb on + strand at 191.025 kb on + strand at 191.026 kb on - strand at 191.026 kb on - strand at 191.026 kb on - strand at 191.026 kb on - strand at 191.029 kb on + strand at 191.083 kb on + strand at 191.085 kb on - strand at 191.088 kb on + strand at 191.173 kb on + strand at 191.173 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day4 remove 188,893 + HMPREF1078_RS13685 0.16 +0.2 188,893 + HMPREF1078_RS13685 0.16 +1.3 188,894 - HMPREF1078_RS13685 0.16 +0.7 188,894 - HMPREF1078_RS13685 0.16 -2.6 189,013 - HMPREF1078_RS13685 0.26 +0.3 189,036 + HMPREF1078_RS13685 0.28 +0.0 189,174 + HMPREF1078_RS13685 0.40 +2.0 189,174 + HMPREF1078_RS13685 0.40 -1.6 189,174 + HMPREF1078_RS13685 0.40 -1.7 189,175 - HMPREF1078_RS13685 0.40 +2.2 189,175 - HMPREF1078_RS13685 0.40 +1.2 189,195 + HMPREF1078_RS13685 0.42 -0.1 189,361 - HMPREF1078_RS13685 0.56 -0.4 189,377 + HMPREF1078_RS13685 0.57 -1.1 189,390 + HMPREF1078_RS13685 0.58 -0.3 189,415 - HMPREF1078_RS13685 0.60 -1.8 189,415 - HMPREF1078_RS13685 0.60 -1.7 189,417 + HMPREF1078_RS13685 0.60 -2.8 189,418 - HMPREF1078_RS13685 0.60 -0.9 189,418 - HMPREF1078_RS13685 0.60 -0.8 189,419 + HMPREF1078_RS13685 0.61 -2.5 189,420 - HMPREF1078_RS13685 0.61 -0.2 189,420 - HMPREF1078_RS13685 0.61 -0.7 189,420 - HMPREF1078_RS13685 0.61 -1.8 189,420 - HMPREF1078_RS13685 0.61 +0.2 189,420 - HMPREF1078_RS13685 0.61 -1.6 189,480 + HMPREF1078_RS13685 0.66 +1.2 189,525 + HMPREF1078_RS13685 0.69 -0.1 189,525 + HMPREF1078_RS13685 0.69 +0.4 189,525 + HMPREF1078_RS13685 0.69 -1.0 189,525 + HMPREF1078_RS13685 0.69 +1.7 189,525 + HMPREF1078_RS13685 0.69 -0.7 189,525 + HMPREF1078_RS13685 0.69 +0.5 189,526 - HMPREF1078_RS13685 0.70 -0.8 189,526 - HMPREF1078_RS13685 0.70 -2.4 189,526 - HMPREF1078_RS13685 0.70 +1.3 189,526 - HMPREF1078_RS13685 0.70 +0.6 189,526 - HMPREF1078_RS13685 0.70 +0.2 189,526 - HMPREF1078_RS13685 0.70 +0.0 189,553 + HMPREF1078_RS13685 0.72 -0.4 189,553 + HMPREF1078_RS13685 0.72 -0.4 189,569 + HMPREF1078_RS13685 0.73 +0.4 189,580 - HMPREF1078_RS13685 0.74 +0.6 189,580 - HMPREF1078_RS13685 0.74 -0.8 189,580 - HMPREF1078_RS13685 0.74 -0.8 189,583 + HMPREF1078_RS13685 0.74 -0.7 189,583 + HMPREF1078_RS13685 0.74 -0.5 189,583 + HMPREF1078_RS13685 0.74 -2.3 189,583 + HMPREF1078_RS13685 0.74 +2.9 189,583 + HMPREF1078_RS13685 0.74 +0.5 189,583 + HMPREF1078_RS13685 0.74 -0.8 189,583 + HMPREF1078_RS13685 0.74 -1.8 189,583 + HMPREF1078_RS13685 0.74 -0.0 189,584 - HMPREF1078_RS13685 0.74 -0.2 189,584 - HMPREF1078_RS13685 0.74 -1.2 189,584 - HMPREF1078_RS13685 0.74 -1.7 189,584 - HMPREF1078_RS13685 0.74 +0.0 189,584 - HMPREF1078_RS13685 0.74 -1.4 189,584 - HMPREF1078_RS13685 0.74 +0.6 189,584 - HMPREF1078_RS13685 0.74 +0.2 189,584 - HMPREF1078_RS13685 0.74 +0.2 189,584 - HMPREF1078_RS13685 0.74 -1.9 189,584 - HMPREF1078_RS13685 0.74 -1.0 189,584 - HMPREF1078_RS13685 0.74 +0.2 189,584 - HMPREF1078_RS13685 0.74 +0.6 189,584 - HMPREF1078_RS13685 0.74 +0.6 189,630 + HMPREF1078_RS13685 0.78 +0.2 189,630 + HMPREF1078_RS13685 0.78 -0.5 189,631 - HMPREF1078_RS13685 0.78 -0.4 189,631 - HMPREF1078_RS13685 0.78 -0.8 189,668 + HMPREF1078_RS13685 0.82 -0.2 189,689 + HMPREF1078_RS13685 0.83 -1.2 189,714 - HMPREF1078_RS13685 0.85 -2.2 189,734 + HMPREF1078_RS13685 0.87 -1.4 189,734 + HMPREF1078_RS13685 0.87 -0.8 189,735 - HMPREF1078_RS13685 0.87 -0.2 189,751 + HMPREF1078_RS13685 0.89 +0.0 189,757 - HMPREF1078_RS13685 0.89 -0.2 189,765 - HMPREF1078_RS13685 0.90 +0.5 189,837 - +0.6 189,874 + +0.8 189,875 - -0.3 189,888 + -2.4 189,888 + -1.0 189,889 - -0.4 189,889 - -1.3 189,909 + -0.3 189,910 - -1.4 189,910 - -1.2 189,911 + -1.1 190,032 + HMPREF1078_RS13690 0.25 -2.8 190,032 + HMPREF1078_RS13690 0.25 -2.2 190,032 + HMPREF1078_RS13690 0.25 -1.7 190,033 - HMPREF1078_RS13690 0.25 +0.7 190,035 - HMPREF1078_RS13690 0.25 -2.2 190,078 - HMPREF1078_RS13690 0.33 -0.8 190,109 + HMPREF1078_RS13690 0.38 -1.7 190,109 + HMPREF1078_RS13690 0.38 -2.4 190,109 + HMPREF1078_RS13690 0.38 -2.8 190,110 - HMPREF1078_RS13690 0.38 -0.8 190,110 - HMPREF1078_RS13690 0.38 +0.2 190,110 - HMPREF1078_RS13690 0.38 -2.8 190,110 - HMPREF1078_RS13690 0.38 -1.0 190,110 - HMPREF1078_RS13690 0.38 -1.6 190,161 - HMPREF1078_RS13690 0.47 -1.8 190,278 + HMPREF1078_RS13690 0.67 -2.1 190,278 + HMPREF1078_RS13690 0.67 -1.7 190,413 - -0.8 190,455 + -1.4 190,455 + +1.7 190,456 - -1.3 190,486 + -1.7 190,486 + -1.2 190,541 - HMPREF1078_RS13695 0.14 -0.4 190,600 - HMPREF1078_RS13695 0.25 -2.9 190,639 - HMPREF1078_RS13695 0.32 -1.9 190,677 + HMPREF1078_RS13695 0.39 +2.2 190,703 + HMPREF1078_RS13695 0.44 -1.0 190,703 + HMPREF1078_RS13695 0.44 -0.8 190,704 - HMPREF1078_RS13695 0.44 -2.8 190,734 - HMPREF1078_RS13695 0.49 -3.1 190,785 - HMPREF1078_RS13695 0.59 +0.2 190,844 - HMPREF1078_RS13695 0.69 -2.4 190,862 + HMPREF1078_RS13695 0.73 -2.7 190,862 + HMPREF1078_RS13695 0.73 -0.7 190,863 - HMPREF1078_RS13695 0.73 +0.2 190,938 + HMPREF1078_RS13695 0.87 -2.5 190,938 + HMPREF1078_RS13695 0.87 -0.8 190,961 - +1.2 190,985 + -1.7 190,985 + -1.2 190,986 - -1.5 190,986 - -0.7 191,013 + +1.2 191,013 + +3.0 191,013 + -1.2 191,014 - +0.8 191,017 + +0.2 191,018 - +1.7 191,025 + +0.4 191,025 + -1.4 191,026 - -2.7 191,026 - -2.9 191,026 - +1.9 191,026 - -2.1 191,029 + -1.7 191,083 + +1.2 191,085 - +1.2 191,088 + -0.0 191,173 + -2.3 191,173 + -0.4
Or see this region's nucleotide sequence