Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS13625 and HMPREF1078_RS13630 are separated by 9 nucleotides HMPREF1078_RS13630 and HMPREF1078_RS13635 are separated by 129 nucleotides HMPREF1078_RS13635 and HMPREF1078_RS13640 are separated by 24 nucleotides HMPREF1078_RS13640 and HMPREF1078_RS13645 are separated by 132 nucleotides
HMPREF1078_RS13625: HMPREF1078_RS13625 - MarC family protein, at 173,654 to 174,253
_RS13625
HMPREF1078_RS13630: HMPREF1078_RS13630 - M23 family metallopeptidase, at 174,263 to 175,117
_RS13630
HMPREF1078_RS13635: HMPREF1078_RS13635 - mannonate dehydratase, at 175,247 to 176,419
_RS13635
HMPREF1078_RS13640: HMPREF1078_RS13640 - SDR family oxidoreductase, at 176,444 to 177,256
_RS13640
HMPREF1078_RS13645: HMPREF1078_RS13645 - LacI family DNA-binding transcriptional regulator, at 177,389 to 178,444
_RS13645
Position (kb) 175
176
177 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 174.288 kb on - strand at 174.321 kb on + strand at 174.321 kb on + strand at 174.322 kb on - strand at 174.322 kb on - strand at 174.415 kb on + strand, within HMPREF1078_RS13630 at 174.476 kb on + strand, within HMPREF1078_RS13630 at 174.477 kb on - strand, within HMPREF1078_RS13630 at 174.502 kb on + strand, within HMPREF1078_RS13630 at 174.502 kb on + strand, within HMPREF1078_RS13630 at 174.552 kb on + strand, within HMPREF1078_RS13630 at 174.553 kb on - strand, within HMPREF1078_RS13630 at 174.553 kb on - strand, within HMPREF1078_RS13630 at 174.553 kb on - strand, within HMPREF1078_RS13630 at 174.583 kb on + strand, within HMPREF1078_RS13630 at 174.584 kb on - strand, within HMPREF1078_RS13630 at 174.584 kb on - strand, within HMPREF1078_RS13630 at 174.584 kb on - strand, within HMPREF1078_RS13630 at 174.591 kb on + strand, within HMPREF1078_RS13630 at 174.591 kb on + strand, within HMPREF1078_RS13630 at 174.591 kb on + strand, within HMPREF1078_RS13630 at 174.592 kb on - strand, within HMPREF1078_RS13630 at 174.592 kb on - strand, within HMPREF1078_RS13630 at 174.612 kb on + strand, within HMPREF1078_RS13630 at 174.613 kb on - strand, within HMPREF1078_RS13630 at 174.620 kb on + strand, within HMPREF1078_RS13630 at 174.629 kb on + strand, within HMPREF1078_RS13630 at 174.640 kb on - strand, within HMPREF1078_RS13630 at 174.646 kb on - strand, within HMPREF1078_RS13630 at 174.646 kb on - strand, within HMPREF1078_RS13630 at 174.648 kb on + strand, within HMPREF1078_RS13630 at 174.655 kb on + strand, within HMPREF1078_RS13630 at 174.656 kb on - strand, within HMPREF1078_RS13630 at 174.656 kb on - strand, within HMPREF1078_RS13630 at 174.659 kb on + strand, within HMPREF1078_RS13630 at 174.687 kb on - strand, within HMPREF1078_RS13630 at 174.694 kb on + strand, within HMPREF1078_RS13630 at 174.694 kb on + strand, within HMPREF1078_RS13630 at 174.695 kb on - strand, within HMPREF1078_RS13630 at 174.695 kb on - strand, within HMPREF1078_RS13630 at 174.720 kb on - strand, within HMPREF1078_RS13630 at 174.740 kb on - strand, within HMPREF1078_RS13630 at 174.750 kb on + strand, within HMPREF1078_RS13630 at 174.762 kb on - strand, within HMPREF1078_RS13630 at 174.789 kb on + strand, within HMPREF1078_RS13630 at 174.790 kb on - strand, within HMPREF1078_RS13630 at 174.790 kb on - strand, within HMPREF1078_RS13630 at 174.896 kb on + strand, within HMPREF1078_RS13630 at 174.897 kb on - strand, within HMPREF1078_RS13630 at 174.903 kb on - strand, within HMPREF1078_RS13630 at 174.903 kb on - strand, within HMPREF1078_RS13630 at 174.904 kb on + strand, within HMPREF1078_RS13630 at 174.930 kb on + strand, within HMPREF1078_RS13630 at 174.930 kb on + strand, within HMPREF1078_RS13630 at 174.931 kb on - strand, within HMPREF1078_RS13630 at 174.985 kb on + strand, within HMPREF1078_RS13630 at 175.073 kb on + strand at 175.073 kb on + strand at 175.074 kb on - strand at 175.074 kb on - strand at 175.077 kb on - strand at 175.079 kb on + strand at 175.080 kb on - strand at 175.082 kb on + strand at 175.101 kb on + strand at 175.138 kb on - strand at 175.173 kb on + strand at 175.249 kb on - strand at 175.326 kb on + strand at 175.327 kb on - strand at 175.337 kb on - strand at 175.349 kb on + strand at 175.436 kb on + strand, within HMPREF1078_RS13635 at 175.444 kb on - strand, within HMPREF1078_RS13635 at 175.451 kb on + strand, within HMPREF1078_RS13635 at 175.452 kb on - strand, within HMPREF1078_RS13635 at 175.452 kb on - strand, within HMPREF1078_RS13635 at 175.507 kb on + strand, within HMPREF1078_RS13635 at 175.511 kb on - strand, within HMPREF1078_RS13635 at 175.511 kb on - strand, within HMPREF1078_RS13635 at 175.511 kb on - strand, within HMPREF1078_RS13635 at 175.511 kb on - strand, within HMPREF1078_RS13635 at 175.514 kb on + strand, within HMPREF1078_RS13635 at 175.515 kb on - strand, within HMPREF1078_RS13635 at 175.515 kb on - strand, within HMPREF1078_RS13635 at 175.515 kb on - strand, within HMPREF1078_RS13635 at 175.515 kb on - strand, within HMPREF1078_RS13635 at 175.515 kb on - strand, within HMPREF1078_RS13635 at 175.516 kb on + strand, within HMPREF1078_RS13635 at 175.685 kb on + strand, within HMPREF1078_RS13635 at 175.723 kb on + strand, within HMPREF1078_RS13635 at 175.724 kb on - strand, within HMPREF1078_RS13635 at 175.733 kb on + strand, within HMPREF1078_RS13635 at 175.813 kb on - strand, within HMPREF1078_RS13635 at 175.882 kb on + strand, within HMPREF1078_RS13635 at 175.890 kb on - strand, within HMPREF1078_RS13635 at 175.890 kb on - strand, within HMPREF1078_RS13635 at 175.892 kb on + strand, within HMPREF1078_RS13635 at 175.892 kb on + strand, within HMPREF1078_RS13635 at 175.892 kb on + strand, within HMPREF1078_RS13635 at 175.960 kb on + strand, within HMPREF1078_RS13635 at 175.960 kb on + strand, within HMPREF1078_RS13635 at 175.961 kb on - strand, within HMPREF1078_RS13635 at 175.996 kb on - strand, within HMPREF1078_RS13635 at 176.034 kb on - strand, within HMPREF1078_RS13635 at 176.074 kb on + strand, within HMPREF1078_RS13635 at 176.099 kb on - strand, within HMPREF1078_RS13635 at 176.099 kb on - strand, within HMPREF1078_RS13635 at 176.110 kb on + strand, within HMPREF1078_RS13635 at 176.158 kb on - strand, within HMPREF1078_RS13635 at 176.170 kb on - strand, within HMPREF1078_RS13635 at 176.241 kb on - strand, within HMPREF1078_RS13635 at 176.260 kb on + strand, within HMPREF1078_RS13635 at 176.261 kb on - strand, within HMPREF1078_RS13635 at 176.294 kb on + strand, within HMPREF1078_RS13635 at 176.294 kb on + strand, within HMPREF1078_RS13635 at 176.295 kb on - strand, within HMPREF1078_RS13635 at 176.295 kb on - strand, within HMPREF1078_RS13635 at 176.302 kb on - strand at 176.311 kb on + strand at 176.415 kb on + strand at 176.416 kb on - strand at 176.416 kb on - strand at 176.419 kb on + strand at 176.419 kb on + strand at 176.420 kb on - strand at 176.420 kb on - strand at 176.445 kb on + strand at 176.450 kb on - strand at 176.475 kb on - strand at 176.523 kb on + strand at 176.554 kb on + strand, within HMPREF1078_RS13640 at 176.575 kb on + strand, within HMPREF1078_RS13640 at 176.576 kb on - strand, within HMPREF1078_RS13640 at 176.576 kb on - strand, within HMPREF1078_RS13640 at 176.635 kb on + strand, within HMPREF1078_RS13640 at 176.763 kb on + strand, within HMPREF1078_RS13640 at 176.855 kb on + strand, within HMPREF1078_RS13640 at 176.855 kb on + strand, within HMPREF1078_RS13640 at 176.895 kb on - strand, within HMPREF1078_RS13640 at 176.965 kb on + strand, within HMPREF1078_RS13640 at 176.998 kb on + strand, within HMPREF1078_RS13640 at 176.999 kb on - strand, within HMPREF1078_RS13640 at 177.020 kb on - strand, within HMPREF1078_RS13640 at 177.020 kb on - strand, within HMPREF1078_RS13640 at 177.020 kb on - strand, within HMPREF1078_RS13640 at 177.053 kb on + strand, within HMPREF1078_RS13640 at 177.053 kb on + strand, within HMPREF1078_RS13640 at 177.054 kb on - strand, within HMPREF1078_RS13640 at 177.091 kb on + strand, within HMPREF1078_RS13640 at 177.108 kb on - strand, within HMPREF1078_RS13640 at 177.146 kb on - strand, within HMPREF1078_RS13640 at 177.155 kb on - strand, within HMPREF1078_RS13640 at 177.184 kb on + strand at 177.185 kb on - strand at 177.214 kb on + strand at 177.218 kb on - strand at 177.257 kb on - strand at 177.269 kb on + strand at 177.292 kb on + strand at 177.292 kb on + strand at 177.293 kb on - strand at 177.296 kb on - strand at 177.394 kb on + strand at 177.396 kb on + strand at 177.397 kb on - strand at 177.404 kb on - strand at 177.404 kb on - strand at 177.406 kb on - strand at 177.408 kb on + strand at 177.408 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day4 remove 174,288 - -0.6 174,321 + +0.0 174,321 + -0.8 174,322 - -0.0 174,322 - +0.3 174,415 + HMPREF1078_RS13630 0.18 -0.7 174,476 + HMPREF1078_RS13630 0.25 +0.5 174,477 - HMPREF1078_RS13630 0.25 +0.2 174,502 + HMPREF1078_RS13630 0.28 -0.8 174,502 + HMPREF1078_RS13630 0.28 -0.8 174,552 + HMPREF1078_RS13630 0.34 +0.3 174,553 - HMPREF1078_RS13630 0.34 -0.9 174,553 - HMPREF1078_RS13630 0.34 +0.5 174,553 - HMPREF1078_RS13630 0.34 -0.1 174,583 + HMPREF1078_RS13630 0.37 -1.5 174,584 - HMPREF1078_RS13630 0.38 -2.5 174,584 - HMPREF1078_RS13630 0.38 +0.3 174,584 - HMPREF1078_RS13630 0.38 -1.2 174,591 + HMPREF1078_RS13630 0.38 -0.7 174,591 + HMPREF1078_RS13630 0.38 -0.2 174,591 + HMPREF1078_RS13630 0.38 +1.2 174,592 - HMPREF1078_RS13630 0.38 +0.6 174,592 - HMPREF1078_RS13630 0.38 +0.7 174,612 + HMPREF1078_RS13630 0.41 +0.4 174,613 - HMPREF1078_RS13630 0.41 -0.8 174,620 + HMPREF1078_RS13630 0.42 -1.8 174,629 + HMPREF1078_RS13630 0.43 -0.7 174,640 - HMPREF1078_RS13630 0.44 +0.5 174,646 - HMPREF1078_RS13630 0.45 -0.3 174,646 - HMPREF1078_RS13630 0.45 +1.2 174,648 + HMPREF1078_RS13630 0.45 -2.2 174,655 + HMPREF1078_RS13630 0.46 -0.6 174,656 - HMPREF1078_RS13630 0.46 -0.2 174,656 - HMPREF1078_RS13630 0.46 -1.0 174,659 + HMPREF1078_RS13630 0.46 +0.6 174,687 - HMPREF1078_RS13630 0.50 +0.2 174,694 + HMPREF1078_RS13630 0.50 -1.8 174,694 + HMPREF1078_RS13630 0.50 +2.2 174,695 - HMPREF1078_RS13630 0.51 +0.4 174,695 - HMPREF1078_RS13630 0.51 -1.4 174,720 - HMPREF1078_RS13630 0.53 -0.8 174,740 - HMPREF1078_RS13630 0.56 +0.1 174,750 + HMPREF1078_RS13630 0.57 -1.8 174,762 - HMPREF1078_RS13630 0.58 -1.3 174,789 + HMPREF1078_RS13630 0.62 -1.3 174,790 - HMPREF1078_RS13630 0.62 -0.2 174,790 - HMPREF1078_RS13630 0.62 -0.7 174,896 + HMPREF1078_RS13630 0.74 -0.8 174,897 - HMPREF1078_RS13630 0.74 +0.2 174,903 - HMPREF1078_RS13630 0.75 -3.3 174,903 - HMPREF1078_RS13630 0.75 -3.7 174,904 + HMPREF1078_RS13630 0.75 -2.7 174,930 + HMPREF1078_RS13630 0.78 -0.8 174,930 + HMPREF1078_RS13630 0.78 +0.2 174,931 - HMPREF1078_RS13630 0.78 +0.2 174,985 + HMPREF1078_RS13630 0.84 -0.8 175,073 + -0.4 175,073 + -0.4 175,074 - -0.8 175,074 - +0.9 175,077 - +0.2 175,079 + -1.8 175,080 - -2.3 175,082 + -1.7 175,101 + -1.2 175,138 - -1.0 175,173 + +3.0 175,249 - -3.3 175,326 + -1.0 175,327 - -2.4 175,337 - -1.8 175,349 + -2.4 175,436 + HMPREF1078_RS13635 0.16 -1.7 175,444 - HMPREF1078_RS13635 0.17 -3.3 175,451 + HMPREF1078_RS13635 0.17 -3.2 175,452 - HMPREF1078_RS13635 0.17 -0.4 175,452 - HMPREF1078_RS13635 0.17 -1.4 175,507 + HMPREF1078_RS13635 0.22 -3.3 175,511 - HMPREF1078_RS13635 0.23 -2.4 175,511 - HMPREF1078_RS13635 0.23 -2.9 175,511 - HMPREF1078_RS13635 0.23 -0.8 175,511 - HMPREF1078_RS13635 0.23 -2.3 175,514 + HMPREF1078_RS13635 0.23 -1.0 175,515 - HMPREF1078_RS13635 0.23 -3.4 175,515 - HMPREF1078_RS13635 0.23 -1.3 175,515 - HMPREF1078_RS13635 0.23 -0.7 175,515 - HMPREF1078_RS13635 0.23 -1.1 175,515 - HMPREF1078_RS13635 0.23 -3.5 175,516 + HMPREF1078_RS13635 0.23 -4.5 175,685 + HMPREF1078_RS13635 0.37 -0.8 175,723 + HMPREF1078_RS13635 0.41 -3.4 175,724 - HMPREF1078_RS13635 0.41 -3.1 175,733 + HMPREF1078_RS13635 0.41 -1.3 175,813 - HMPREF1078_RS13635 0.48 -1.5 175,882 + HMPREF1078_RS13635 0.54 -2.7 175,890 - HMPREF1078_RS13635 0.55 -2.2 175,890 - HMPREF1078_RS13635 0.55 -1.5 175,892 + HMPREF1078_RS13635 0.55 -1.7 175,892 + HMPREF1078_RS13635 0.55 -1.3 175,892 + HMPREF1078_RS13635 0.55 -3.1 175,960 + HMPREF1078_RS13635 0.61 -1.2 175,960 + HMPREF1078_RS13635 0.61 -1.8 175,961 - HMPREF1078_RS13635 0.61 -3.1 175,996 - HMPREF1078_RS13635 0.64 -0.8 176,034 - HMPREF1078_RS13635 0.67 -1.3 176,074 + HMPREF1078_RS13635 0.71 -2.9 176,099 - HMPREF1078_RS13635 0.73 -3.6 176,099 - HMPREF1078_RS13635 0.73 -1.3 176,110 + HMPREF1078_RS13635 0.74 +0.2 176,158 - HMPREF1078_RS13635 0.78 -2.6 176,170 - HMPREF1078_RS13635 0.79 -0.8 176,241 - HMPREF1078_RS13635 0.85 -3.5 176,260 + HMPREF1078_RS13635 0.86 -2.5 176,261 - HMPREF1078_RS13635 0.86 -2.3 176,294 + HMPREF1078_RS13635 0.89 -1.8 176,294 + HMPREF1078_RS13635 0.89 -3.4 176,295 - HMPREF1078_RS13635 0.89 -0.8 176,295 - HMPREF1078_RS13635 0.89 -0.7 176,302 - -0.4 176,311 + -0.4 176,415 + -1.8 176,416 - -0.8 176,416 - -2.1 176,419 + -2.0 176,419 + -3.4 176,420 - -1.8 176,420 - -2.0 176,445 + -2.3 176,450 - -1.7 176,475 - -3.4 176,523 + +1.2 176,554 + HMPREF1078_RS13640 0.14 -1.8 176,575 + HMPREF1078_RS13640 0.16 -2.3 176,576 - HMPREF1078_RS13640 0.16 -3.7 176,576 - HMPREF1078_RS13640 0.16 -4.7 176,635 + HMPREF1078_RS13640 0.23 -3.8 176,763 + HMPREF1078_RS13640 0.39 -3.2 176,855 + HMPREF1078_RS13640 0.51 -2.0 176,855 + HMPREF1078_RS13640 0.51 -4.3 176,895 - HMPREF1078_RS13640 0.55 -3.2 176,965 + HMPREF1078_RS13640 0.64 -2.5 176,998 + HMPREF1078_RS13640 0.68 -0.8 176,999 - HMPREF1078_RS13640 0.68 -1.7 177,020 - HMPREF1078_RS13640 0.71 -3.5 177,020 - HMPREF1078_RS13640 0.71 -2.3 177,020 - HMPREF1078_RS13640 0.71 -4.3 177,053 + HMPREF1078_RS13640 0.75 -2.5 177,053 + HMPREF1078_RS13640 0.75 -3.0 177,054 - HMPREF1078_RS13640 0.75 -2.8 177,091 + HMPREF1078_RS13640 0.80 -3.3 177,108 - HMPREF1078_RS13640 0.82 -3.4 177,146 - HMPREF1078_RS13640 0.86 -1.7 177,155 - HMPREF1078_RS13640 0.87 -3.7 177,184 + -1.4 177,185 - -0.9 177,214 + -2.0 177,218 - -2.8 177,257 - -1.2 177,269 + -0.8 177,292 + -3.4 177,292 + -2.9 177,293 - +1.0 177,296 - -2.1 177,394 + -3.3 177,396 + -3.0 177,397 - -1.6 177,404 - -1.7 177,404 - -2.8 177,406 - -1.8 177,408 + -3.2 177,408 + -1.2
Or see this region's nucleotide sequence