Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS13540 and HMPREF1078_RS13545 are separated by 179 nucleotides HMPREF1078_RS13545 and HMPREF1078_RS13550 are separated by 176 nucleotides
HMPREF1078_RS13540: HMPREF1078_RS13540 - glycosyltransferase, at 154,258 to 155,436
_RS13540
HMPREF1078_RS13545: HMPREF1078_RS13545 - diaminopimelate decarboxylase, at 155,616 to 156,776
_RS13545
HMPREF1078_RS13550: HMPREF1078_RS13550 - aspartate kinase, at 156,953 to 158,272
_RS13550
Position (kb) 155
156
157 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 154.628 kb on - strand, within HMPREF1078_RS13540 at 154.641 kb on + strand, within HMPREF1078_RS13540 at 154.666 kb on + strand, within HMPREF1078_RS13540 at 154.666 kb on + strand, within HMPREF1078_RS13540 at 154.666 kb on + strand, within HMPREF1078_RS13540 at 154.667 kb on - strand, within HMPREF1078_RS13540 at 154.674 kb on + strand, within HMPREF1078_RS13540 at 154.675 kb on - strand, within HMPREF1078_RS13540 at 154.773 kb on + strand, within HMPREF1078_RS13540 at 154.773 kb on + strand, within HMPREF1078_RS13540 at 154.841 kb on - strand, within HMPREF1078_RS13540 at 154.841 kb on - strand, within HMPREF1078_RS13540 at 154.863 kb on - strand, within HMPREF1078_RS13540 at 154.916 kb on - strand, within HMPREF1078_RS13540 at 154.921 kb on - strand, within HMPREF1078_RS13540 at 154.940 kb on + strand, within HMPREF1078_RS13540 at 154.940 kb on + strand, within HMPREF1078_RS13540 at 154.940 kb on + strand, within HMPREF1078_RS13540 at 154.941 kb on - strand, within HMPREF1078_RS13540 at 155.087 kb on + strand, within HMPREF1078_RS13540 at 155.087 kb on + strand, within HMPREF1078_RS13540 at 155.087 kb on + strand, within HMPREF1078_RS13540 at 155.087 kb on + strand, within HMPREF1078_RS13540 at 155.087 kb on + strand, within HMPREF1078_RS13540 at 155.087 kb on + strand, within HMPREF1078_RS13540 at 155.087 kb on + strand, within HMPREF1078_RS13540 at 155.087 kb on + strand, within HMPREF1078_RS13540 at 155.087 kb on + strand, within HMPREF1078_RS13540 at 155.087 kb on + strand, within HMPREF1078_RS13540 at 155.087 kb on + strand, within HMPREF1078_RS13540 at 155.087 kb on + strand, within HMPREF1078_RS13540 at 155.087 kb on + strand, within HMPREF1078_RS13540 at 155.087 kb on + strand, within HMPREF1078_RS13540 at 155.087 kb on + strand, within HMPREF1078_RS13540 at 155.088 kb on - strand, within HMPREF1078_RS13540 at 155.088 kb on - strand, within HMPREF1078_RS13540 at 155.088 kb on - strand, within HMPREF1078_RS13540 at 155.088 kb on - strand, within HMPREF1078_RS13540 at 155.088 kb on - strand, within HMPREF1078_RS13540 at 155.088 kb on - strand, within HMPREF1078_RS13540 at 155.088 kb on - strand, within HMPREF1078_RS13540 at 155.088 kb on - strand, within HMPREF1078_RS13540 at 155.088 kb on - strand, within HMPREF1078_RS13540 at 155.088 kb on - strand, within HMPREF1078_RS13540 at 155.088 kb on - strand, within HMPREF1078_RS13540 at 155.088 kb on - strand, within HMPREF1078_RS13540 at 155.088 kb on - strand, within HMPREF1078_RS13540 at 155.088 kb on - strand, within HMPREF1078_RS13540 at 155.093 kb on + strand, within HMPREF1078_RS13540 at 155.109 kb on - strand, within HMPREF1078_RS13540 at 155.225 kb on - strand, within HMPREF1078_RS13540 at 155.249 kb on + strand, within HMPREF1078_RS13540 at 155.323 kb on + strand at 155.324 kb on - strand at 155.351 kb on + strand at 155.356 kb on + strand at 155.356 kb on + strand at 155.357 kb on - strand at 155.362 kb on + strand at 155.363 kb on - strand at 155.368 kb on - strand at 155.368 kb on - strand at 155.418 kb on + strand at 155.419 kb on - strand at 155.444 kb on - strand at 155.460 kb on + strand at 155.489 kb on + strand at 155.490 kb on - strand at 155.491 kb on + strand at 155.518 kb on + strand at 155.519 kb on - strand at 155.519 kb on - strand at 155.547 kb on - strand at 155.597 kb on + strand at 155.597 kb on + strand at 155.597 kb on + strand at 155.611 kb on - strand at 155.617 kb on + strand at 155.617 kb on + strand at 155.618 kb on - strand at 155.618 kb on - strand at 155.660 kb on + strand at 155.661 kb on - strand at 155.662 kb on + strand at 155.663 kb on - strand at 155.663 kb on - strand at 155.676 kb on + strand at 155.677 kb on - strand at 155.794 kb on + strand, within HMPREF1078_RS13545 at 155.795 kb on - strand, within HMPREF1078_RS13545 at 155.840 kb on - strand, within HMPREF1078_RS13545 at 155.849 kb on - strand, within HMPREF1078_RS13545 at 155.849 kb on - strand, within HMPREF1078_RS13545 at 155.920 kb on - strand, within HMPREF1078_RS13545 at 155.920 kb on - strand, within HMPREF1078_RS13545 at 155.923 kb on + strand, within HMPREF1078_RS13545 at 155.923 kb on + strand, within HMPREF1078_RS13545 at 155.923 kb on + strand, within HMPREF1078_RS13545 at 155.924 kb on - strand, within HMPREF1078_RS13545 at 155.924 kb on - strand, within HMPREF1078_RS13545 at 155.924 kb on - strand, within HMPREF1078_RS13545 at 155.925 kb on + strand, within HMPREF1078_RS13545 at 155.928 kb on + strand, within HMPREF1078_RS13545 at 155.928 kb on + strand, within HMPREF1078_RS13545 at 156.012 kb on + strand, within HMPREF1078_RS13545 at 156.013 kb on - strand, within HMPREF1078_RS13545 at 156.013 kb on - strand, within HMPREF1078_RS13545 at 156.120 kb on + strand, within HMPREF1078_RS13545 at 156.188 kb on + strand, within HMPREF1078_RS13545 at 156.188 kb on + strand, within HMPREF1078_RS13545 at 156.188 kb on + strand, within HMPREF1078_RS13545 at 156.188 kb on + strand, within HMPREF1078_RS13545 at 156.188 kb on + strand, within HMPREF1078_RS13545 at 156.188 kb on + strand, within HMPREF1078_RS13545 at 156.189 kb on - strand, within HMPREF1078_RS13545 at 156.189 kb on - strand, within HMPREF1078_RS13545 at 156.195 kb on - strand, within HMPREF1078_RS13545 at 156.195 kb on - strand, within HMPREF1078_RS13545 at 156.195 kb on - strand, within HMPREF1078_RS13545 at 156.236 kb on + strand, within HMPREF1078_RS13545 at 156.236 kb on + strand, within HMPREF1078_RS13545 at 156.262 kb on - strand, within HMPREF1078_RS13545 at 156.262 kb on - strand, within HMPREF1078_RS13545 at 156.335 kb on + strand, within HMPREF1078_RS13545 at 156.336 kb on - strand, within HMPREF1078_RS13545 at 156.336 kb on - strand, within HMPREF1078_RS13545 at 156.336 kb on - strand, within HMPREF1078_RS13545 at 156.346 kb on - strand, within HMPREF1078_RS13545 at 156.359 kb on + strand, within HMPREF1078_RS13545 at 156.360 kb on - strand, within HMPREF1078_RS13545 at 156.360 kb on - strand, within HMPREF1078_RS13545 at 156.436 kb on - strand, within HMPREF1078_RS13545 at 156.436 kb on - strand, within HMPREF1078_RS13545 at 156.586 kb on + strand, within HMPREF1078_RS13545 at 156.587 kb on - strand, within HMPREF1078_RS13545 at 156.596 kb on + strand, within HMPREF1078_RS13545 at 156.600 kb on - strand, within HMPREF1078_RS13545 at 156.600 kb on - strand, within HMPREF1078_RS13545 at 156.637 kb on + strand, within HMPREF1078_RS13545 at 156.638 kb on - strand, within HMPREF1078_RS13545 at 156.638 kb on - strand, within HMPREF1078_RS13545 at 156.655 kb on + strand, within HMPREF1078_RS13545 at 156.680 kb on + strand at 156.705 kb on + strand at 156.705 kb on + strand at 156.706 kb on - strand at 156.708 kb on - strand at 156.713 kb on - strand at 156.768 kb on + strand at 156.769 kb on - strand at 156.771 kb on + strand at 156.811 kb on - strand at 156.812 kb on + strand at 156.813 kb on - strand at 156.813 kb on - strand at 156.813 kb on - strand at 156.816 kb on + strand at 156.816 kb on + strand at 156.817 kb on - strand at 156.832 kb on - strand at 156.843 kb on + strand at 156.844 kb on - strand at 156.847 kb on + strand at 156.847 kb on + strand at 156.922 kb on - strand at 156.954 kb on + strand at 156.962 kb on - strand at 156.972 kb on - strand at 156.983 kb on + strand at 157.038 kb on + strand at 157.039 kb on - strand at 157.039 kb on - strand at 157.053 kb on + strand at 157.053 kb on + strand at 157.096 kb on + strand, within HMPREF1078_RS13550 at 157.096 kb on + strand, within HMPREF1078_RS13550 at 157.096 kb on + strand, within HMPREF1078_RS13550 at 157.118 kb on - strand, within HMPREF1078_RS13550 at 157.137 kb on - strand, within HMPREF1078_RS13550 at 157.147 kb on + strand, within HMPREF1078_RS13550 at 157.156 kb on + strand, within HMPREF1078_RS13550 at 157.156 kb on + strand, within HMPREF1078_RS13550 at 157.157 kb on - strand, within HMPREF1078_RS13550 at 157.247 kb on + strand, within HMPREF1078_RS13550 at 157.336 kb on + strand, within HMPREF1078_RS13550 at 157.337 kb on - strand, within HMPREF1078_RS13550 at 157.337 kb on - strand, within HMPREF1078_RS13550 at 157.337 kb on - strand, within HMPREF1078_RS13550 at 157.366 kb on + strand, within HMPREF1078_RS13550 at 157.472 kb on - strand, within HMPREF1078_RS13550 at 157.533 kb on - strand, within HMPREF1078_RS13550 at 157.533 kb on - strand, within HMPREF1078_RS13550 at 157.616 kb on + strand, within HMPREF1078_RS13550 at 157.629 kb on - strand, within HMPREF1078_RS13550 at 157.629 kb on - strand, within HMPREF1078_RS13550 at 157.732 kb on + strand, within HMPREF1078_RS13550 at 157.734 kb on + strand, within HMPREF1078_RS13550 at 157.735 kb on - strand, within HMPREF1078_RS13550 at 157.776 kb on - strand, within HMPREF1078_RS13550
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day4 remove 154,628 - HMPREF1078_RS13540 0.31 -1.0 154,641 + HMPREF1078_RS13540 0.32 -2.5 154,666 + HMPREF1078_RS13540 0.35 -0.5 154,666 + HMPREF1078_RS13540 0.35 +0.3 154,666 + HMPREF1078_RS13540 0.35 +3.7 154,667 - HMPREF1078_RS13540 0.35 -0.0 154,674 + HMPREF1078_RS13540 0.35 +1.3 154,675 - HMPREF1078_RS13540 0.35 -2.2 154,773 + HMPREF1078_RS13540 0.44 +0.2 154,773 + HMPREF1078_RS13540 0.44 +0.4 154,841 - HMPREF1078_RS13540 0.49 +1.1 154,841 - HMPREF1078_RS13540 0.49 +0.2 154,863 - HMPREF1078_RS13540 0.51 +0.3 154,916 - HMPREF1078_RS13540 0.56 -0.7 154,921 - HMPREF1078_RS13540 0.56 -0.8 154,940 + HMPREF1078_RS13540 0.58 -0.5 154,940 + HMPREF1078_RS13540 0.58 -0.8 154,940 + HMPREF1078_RS13540 0.58 -1.2 154,941 - HMPREF1078_RS13540 0.58 +0.0 155,087 + HMPREF1078_RS13540 0.70 +0.3 155,087 + HMPREF1078_RS13540 0.70 +1.0 155,087 + HMPREF1078_RS13540 0.70 -2.0 155,087 + HMPREF1078_RS13540 0.70 +0.5 155,087 + HMPREF1078_RS13540 0.70 -0.3 155,087 + HMPREF1078_RS13540 0.70 -1.8 155,087 + HMPREF1078_RS13540 0.70 -0.7 155,087 + HMPREF1078_RS13540 0.70 -0.9 155,087 + HMPREF1078_RS13540 0.70 -1.2 155,087 + HMPREF1078_RS13540 0.70 -0.0 155,087 + HMPREF1078_RS13540 0.70 +0.9 155,087 + HMPREF1078_RS13540 0.70 +1.5 155,087 + HMPREF1078_RS13540 0.70 -1.9 155,087 + HMPREF1078_RS13540 0.70 +1.6 155,087 + HMPREF1078_RS13540 0.70 -1.0 155,088 - HMPREF1078_RS13540 0.70 -0.2 155,088 - HMPREF1078_RS13540 0.70 +1.3 155,088 - HMPREF1078_RS13540 0.70 +0.7 155,088 - HMPREF1078_RS13540 0.70 +0.8 155,088 - HMPREF1078_RS13540 0.70 -1.4 155,088 - HMPREF1078_RS13540 0.70 -1.2 155,088 - HMPREF1078_RS13540 0.70 +0.7 155,088 - HMPREF1078_RS13540 0.70 -2.5 155,088 - HMPREF1078_RS13540 0.70 +0.4 155,088 - HMPREF1078_RS13540 0.70 -0.4 155,088 - HMPREF1078_RS13540 0.70 +0.7 155,088 - HMPREF1078_RS13540 0.70 +0.8 155,088 - HMPREF1078_RS13540 0.70 +0.2 155,088 - HMPREF1078_RS13540 0.70 -2.2 155,093 + HMPREF1078_RS13540 0.71 -0.8 155,109 - HMPREF1078_RS13540 0.72 -1.1 155,225 - HMPREF1078_RS13540 0.82 -0.2 155,249 + HMPREF1078_RS13540 0.84 +0.5 155,323 + -0.9 155,324 - +0.5 155,351 + +0.5 155,356 + +0.6 155,356 + -3.5 155,357 - -0.4 155,362 + +1.7 155,363 - -0.7 155,368 - -0.3 155,368 - -1.0 155,418 + +0.0 155,419 - +0.2 155,444 - -1.9 155,460 + -0.4 155,489 + -0.1 155,490 - +0.7 155,491 + -0.1 155,518 + -2.1 155,519 - +3.0 155,519 - -0.3 155,547 - +0.0 155,597 + -1.5 155,597 + -0.2 155,597 + -1.0 155,611 - +1.6 155,617 + +0.3 155,617 + -0.3 155,618 - -0.8 155,618 - -0.9 155,660 + -3.7 155,661 - -3.2 155,662 + -3.1 155,663 - -2.5 155,663 - -3.2 155,676 + -2.8 155,677 - -2.2 155,794 + HMPREF1078_RS13545 0.15 -1.8 155,795 - HMPREF1078_RS13545 0.15 -3.9 155,840 - HMPREF1078_RS13545 0.19 -3.5 155,849 - HMPREF1078_RS13545 0.20 -1.7 155,849 - HMPREF1078_RS13545 0.20 -4.4 155,920 - HMPREF1078_RS13545 0.26 +0.2 155,920 - HMPREF1078_RS13545 0.26 -1.2 155,923 + HMPREF1078_RS13545 0.26 -2.5 155,923 + HMPREF1078_RS13545 0.26 -0.8 155,923 + HMPREF1078_RS13545 0.26 -3.7 155,924 - HMPREF1078_RS13545 0.27 -3.0 155,924 - HMPREF1078_RS13545 0.27 -2.7 155,924 - HMPREF1078_RS13545 0.27 -2.8 155,925 + HMPREF1078_RS13545 0.27 -1.8 155,928 + HMPREF1078_RS13545 0.27 -1.2 155,928 + HMPREF1078_RS13545 0.27 -2.8 156,012 + HMPREF1078_RS13545 0.34 -0.8 156,013 - HMPREF1078_RS13545 0.34 -3.7 156,013 - HMPREF1078_RS13545 0.34 -1.8 156,120 + HMPREF1078_RS13545 0.43 -3.0 156,188 + HMPREF1078_RS13545 0.49 -2.7 156,188 + HMPREF1078_RS13545 0.49 -2.2 156,188 + HMPREF1078_RS13545 0.49 -3.4 156,188 + HMPREF1078_RS13545 0.49 -3.5 156,188 + HMPREF1078_RS13545 0.49 -2.7 156,188 + HMPREF1078_RS13545 0.49 -3.6 156,189 - HMPREF1078_RS13545 0.49 -2.8 156,189 - HMPREF1078_RS13545 0.49 -1.4 156,195 - HMPREF1078_RS13545 0.50 -3.0 156,195 - HMPREF1078_RS13545 0.50 -2.0 156,195 - HMPREF1078_RS13545 0.50 -3.5 156,236 + HMPREF1078_RS13545 0.53 -4.0 156,236 + HMPREF1078_RS13545 0.53 -3.1 156,262 - HMPREF1078_RS13545 0.56 -1.2 156,262 - HMPREF1078_RS13545 0.56 -3.4 156,335 + HMPREF1078_RS13545 0.62 -4.2 156,336 - HMPREF1078_RS13545 0.62 -1.4 156,336 - HMPREF1078_RS13545 0.62 -4.2 156,336 - HMPREF1078_RS13545 0.62 -3.0 156,346 - HMPREF1078_RS13545 0.63 -5.7 156,359 + HMPREF1078_RS13545 0.64 -3.3 156,360 - HMPREF1078_RS13545 0.64 -4.1 156,360 - HMPREF1078_RS13545 0.64 -3.4 156,436 - HMPREF1078_RS13545 0.71 -2.5 156,436 - HMPREF1078_RS13545 0.71 -3.8 156,586 + HMPREF1078_RS13545 0.84 -0.8 156,587 - HMPREF1078_RS13545 0.84 -3.2 156,596 + HMPREF1078_RS13545 0.84 -3.2 156,600 - HMPREF1078_RS13545 0.85 -4.1 156,600 - HMPREF1078_RS13545 0.85 -3.7 156,637 + HMPREF1078_RS13545 0.88 -1.4 156,638 - HMPREF1078_RS13545 0.88 -3.7 156,638 - HMPREF1078_RS13545 0.88 -4.1 156,655 + HMPREF1078_RS13545 0.89 +0.2 156,680 + -4.1 156,705 + -4.6 156,705 + -3.3 156,706 - -2.4 156,708 - -3.7 156,713 - +0.2 156,768 + -3.4 156,769 - -3.4 156,771 + -4.2 156,811 - +0.0 156,812 + -1.2 156,813 - -0.1 156,813 - -1.5 156,813 - -1.4 156,816 + -3.0 156,816 + -0.4 156,817 - -1.0 156,832 - -0.8 156,843 + -3.9 156,844 - -0.6 156,847 + -3.7 156,847 + -1.7 156,922 - +0.7 156,954 + -2.8 156,962 - -0.1 156,972 - +0.7 156,983 + -0.4 157,038 + -1.3 157,039 - -1.1 157,039 - -2.5 157,053 + -2.8 157,053 + -4.8 157,096 + HMPREF1078_RS13550 0.11 -3.9 157,096 + HMPREF1078_RS13550 0.11 -1.7 157,096 + HMPREF1078_RS13550 0.11 -1.4 157,118 - HMPREF1078_RS13550 0.12 +1.2 157,137 - HMPREF1078_RS13550 0.14 -0.4 157,147 + HMPREF1078_RS13550 0.15 -2.0 157,156 + HMPREF1078_RS13550 0.15 -3.6 157,156 + HMPREF1078_RS13550 0.15 -3.7 157,157 - HMPREF1078_RS13550 0.15 -0.3 157,247 + HMPREF1078_RS13550 0.22 -2.8 157,336 + HMPREF1078_RS13550 0.29 +1.2 157,337 - HMPREF1078_RS13550 0.29 -1.6 157,337 - HMPREF1078_RS13550 0.29 -1.2 157,337 - HMPREF1078_RS13550 0.29 -1.7 157,366 + HMPREF1078_RS13550 0.31 -2.8 157,472 - HMPREF1078_RS13550 0.39 -0.3 157,533 - HMPREF1078_RS13550 0.44 -0.4 157,533 - HMPREF1078_RS13550 0.44 -0.8 157,616 + HMPREF1078_RS13550 0.50 -2.7 157,629 - HMPREF1078_RS13550 0.51 -1.8 157,629 - HMPREF1078_RS13550 0.51 -1.1 157,732 + HMPREF1078_RS13550 0.59 -1.4 157,734 + HMPREF1078_RS13550 0.59 -2.2 157,735 - HMPREF1078_RS13550 0.59 -1.8 157,776 - HMPREF1078_RS13550 0.62 -1.3
Or see this region's nucleotide sequence