Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS13420 and HMPREF1078_RS13425 are separated by 24 nucleotides HMPREF1078_RS13425 and HMPREF1078_RS13430 are separated by 3 nucleotides HMPREF1078_RS13430 and HMPREF1078_RS13435 are separated by 35 nucleotides
HMPREF1078_RS13420: HMPREF1078_RS13420 - hypothetical protein, at 123,026 to 123,715
_RS13420
HMPREF1078_RS13425: HMPREF1078_RS13425 - sugar phosphate isomerase/epimerase, at 123,740 to 124,681
_RS13425
HMPREF1078_RS13430: HMPREF1078_RS13430 - Gfo/Idh/MocA family oxidoreductase, at 124,685 to 126,070
_RS13430
HMPREF1078_RS13435: HMPREF1078_RS13435 - SUMF1/EgtB/PvdO family nonheme iron enzyme, at 126,106 to 127,686
_RS13435
Position (kb) 124
125
126
127 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 123.768 kb on - strand at 123.768 kb on - strand at 123.828 kb on - strand at 123.832 kb on - strand at 123.877 kb on - strand, within HMPREF1078_RS13425 at 123.881 kb on - strand, within HMPREF1078_RS13425 at 123.881 kb on - strand, within HMPREF1078_RS13425 at 123.881 kb on - strand, within HMPREF1078_RS13425 at 124.019 kb on - strand, within HMPREF1078_RS13425 at 124.026 kb on - strand, within HMPREF1078_RS13425 at 124.084 kb on - strand, within HMPREF1078_RS13425 at 124.118 kb on - strand, within HMPREF1078_RS13425 at 124.118 kb on - strand, within HMPREF1078_RS13425 at 124.118 kb on - strand, within HMPREF1078_RS13425 at 124.124 kb on - strand, within HMPREF1078_RS13425 at 124.148 kb on - strand, within HMPREF1078_RS13425 at 124.196 kb on - strand, within HMPREF1078_RS13425 at 124.386 kb on - strand, within HMPREF1078_RS13425 at 124.392 kb on - strand, within HMPREF1078_RS13425 at 124.490 kb on - strand, within HMPREF1078_RS13425 at 124.580 kb on - strand, within HMPREF1078_RS13425 at 124.580 kb on - strand, within HMPREF1078_RS13425 at 124.682 kb on - strand at 124.682 kb on - strand at 124.742 kb on - strand at 124.742 kb on - strand at 124.742 kb on - strand at 124.775 kb on - strand at 124.828 kb on - strand, within HMPREF1078_RS13430 at 124.938 kb on - strand, within HMPREF1078_RS13430 at 124.938 kb on - strand, within HMPREF1078_RS13430 at 124.938 kb on - strand, within HMPREF1078_RS13430 at 124.938 kb on - strand, within HMPREF1078_RS13430 at 124.942 kb on - strand, within HMPREF1078_RS13430 at 124.958 kb on - strand, within HMPREF1078_RS13430 at 124.958 kb on - strand, within HMPREF1078_RS13430 at 124.958 kb on - strand, within HMPREF1078_RS13430 at 124.958 kb on - strand, within HMPREF1078_RS13430 at 124.958 kb on - strand, within HMPREF1078_RS13430 at 124.972 kb on - strand, within HMPREF1078_RS13430 at 125.063 kb on - strand, within HMPREF1078_RS13430 at 125.108 kb on - strand, within HMPREF1078_RS13430 at 125.108 kb on - strand, within HMPREF1078_RS13430 at 125.108 kb on - strand, within HMPREF1078_RS13430 at 125.108 kb on - strand, within HMPREF1078_RS13430 at 125.108 kb on - strand, within HMPREF1078_RS13430 at 125.139 kb on - strand, within HMPREF1078_RS13430 at 125.241 kb on - strand, within HMPREF1078_RS13430 at 125.241 kb on - strand, within HMPREF1078_RS13430 at 125.273 kb on - strand, within HMPREF1078_RS13430 at 125.320 kb on - strand, within HMPREF1078_RS13430 at 125.320 kb on - strand, within HMPREF1078_RS13430 at 125.431 kb on - strand, within HMPREF1078_RS13430 at 125.443 kb on - strand, within HMPREF1078_RS13430 at 125.443 kb on - strand, within HMPREF1078_RS13430 at 125.468 kb on - strand, within HMPREF1078_RS13430 at 125.484 kb on - strand, within HMPREF1078_RS13430 at 125.525 kb on - strand, within HMPREF1078_RS13430 at 125.593 kb on - strand, within HMPREF1078_RS13430 at 125.671 kb on - strand, within HMPREF1078_RS13430 at 125.711 kb on - strand, within HMPREF1078_RS13430 at 125.711 kb on - strand, within HMPREF1078_RS13430 at 125.711 kb on - strand, within HMPREF1078_RS13430 at 125.765 kb on - strand, within HMPREF1078_RS13430 at 125.903 kb on - strand, within HMPREF1078_RS13430 at 125.905 kb on - strand, within HMPREF1078_RS13430 at 125.905 kb on - strand, within HMPREF1078_RS13430 at 125.908 kb on - strand, within HMPREF1078_RS13430 at 125.976 kb on - strand at 125.976 kb on - strand at 126.020 kb on - strand at 126.050 kb on - strand at 126.076 kb on - strand at 126.076 kb on - strand at 126.076 kb on - strand at 126.086 kb on - strand at 126.108 kb on - strand at 126.184 kb on - strand at 126.290 kb on - strand, within HMPREF1078_RS13435 at 126.351 kb on - strand, within HMPREF1078_RS13435 at 126.389 kb on - strand, within HMPREF1078_RS13435 at 126.403 kb on - strand, within HMPREF1078_RS13435 at 126.403 kb on - strand, within HMPREF1078_RS13435 at 126.403 kb on - strand, within HMPREF1078_RS13435 at 126.474 kb on - strand, within HMPREF1078_RS13435 at 126.474 kb on - strand, within HMPREF1078_RS13435 at 126.520 kb on - strand, within HMPREF1078_RS13435 at 126.600 kb on - strand, within HMPREF1078_RS13435 at 126.681 kb on - strand, within HMPREF1078_RS13435 at 126.681 kb on - strand, within HMPREF1078_RS13435 at 126.681 kb on - strand, within HMPREF1078_RS13435 at 126.681 kb on - strand, within HMPREF1078_RS13435 at 126.795 kb on - strand, within HMPREF1078_RS13435 at 126.795 kb on - strand, within HMPREF1078_RS13435 at 126.797 kb on - strand, within HMPREF1078_RS13435 at 126.797 kb on - strand, within HMPREF1078_RS13435 at 126.797 kb on - strand, within HMPREF1078_RS13435 at 126.797 kb on - strand, within HMPREF1078_RS13435 at 126.814 kb on - strand, within HMPREF1078_RS13435 at 126.883 kb on - strand, within HMPREF1078_RS13435 at 127.027 kb on - strand, within HMPREF1078_RS13435 at 127.036 kb on - strand, within HMPREF1078_RS13435
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day4 remove 123,768 - -0.8 123,768 - -0.8 123,828 - +1.2 123,832 - -1.4 123,877 - HMPREF1078_RS13425 0.15 +0.6 123,881 - HMPREF1078_RS13425 0.15 -1.5 123,881 - HMPREF1078_RS13425 0.15 +0.0 123,881 - HMPREF1078_RS13425 0.15 -1.4 124,019 - HMPREF1078_RS13425 0.30 -1.6 124,026 - HMPREF1078_RS13425 0.30 -2.3 124,084 - HMPREF1078_RS13425 0.37 -0.8 124,118 - HMPREF1078_RS13425 0.40 +0.9 124,118 - HMPREF1078_RS13425 0.40 -0.0 124,118 - HMPREF1078_RS13425 0.40 +0.8 124,124 - HMPREF1078_RS13425 0.41 +0.2 124,148 - HMPREF1078_RS13425 0.43 +0.7 124,196 - HMPREF1078_RS13425 0.48 -0.0 124,386 - HMPREF1078_RS13425 0.69 -0.1 124,392 - HMPREF1078_RS13425 0.69 -1.0 124,490 - HMPREF1078_RS13425 0.80 -0.0 124,580 - HMPREF1078_RS13425 0.89 -3.1 124,580 - HMPREF1078_RS13425 0.89 -1.8 124,682 - -0.3 124,682 - -1.1 124,742 - -4.2 124,742 - -2.5 124,742 - -1.7 124,775 - -2.7 124,828 - HMPREF1078_RS13430 0.10 -0.0 124,938 - HMPREF1078_RS13430 0.18 -1.1 124,938 - HMPREF1078_RS13430 0.18 -1.0 124,938 - HMPREF1078_RS13430 0.18 -2.5 124,938 - HMPREF1078_RS13430 0.18 -2.7 124,942 - HMPREF1078_RS13430 0.19 -0.7 124,958 - HMPREF1078_RS13430 0.20 +1.2 124,958 - HMPREF1078_RS13430 0.20 -1.0 124,958 - HMPREF1078_RS13430 0.20 -1.0 124,958 - HMPREF1078_RS13430 0.20 -2.3 124,958 - HMPREF1078_RS13430 0.20 -2.2 124,972 - HMPREF1078_RS13430 0.21 -2.8 125,063 - HMPREF1078_RS13430 0.27 -1.0 125,108 - HMPREF1078_RS13430 0.31 -1.7 125,108 - HMPREF1078_RS13430 0.31 -3.2 125,108 - HMPREF1078_RS13430 0.31 -2.8 125,108 - HMPREF1078_RS13430 0.31 -1.4 125,108 - HMPREF1078_RS13430 0.31 -2.5 125,139 - HMPREF1078_RS13430 0.33 +0.2 125,241 - HMPREF1078_RS13430 0.40 +0.2 125,241 - HMPREF1078_RS13430 0.40 -2.0 125,273 - HMPREF1078_RS13430 0.42 -1.4 125,320 - HMPREF1078_RS13430 0.46 -0.8 125,320 - HMPREF1078_RS13430 0.46 -2.2 125,431 - HMPREF1078_RS13430 0.54 -2.5 125,443 - HMPREF1078_RS13430 0.55 -2.7 125,443 - HMPREF1078_RS13430 0.55 -2.9 125,468 - HMPREF1078_RS13430 0.56 -1.0 125,484 - HMPREF1078_RS13430 0.58 -3.1 125,525 - HMPREF1078_RS13430 0.61 -1.7 125,593 - HMPREF1078_RS13430 0.66 -1.4 125,671 - HMPREF1078_RS13430 0.71 -1.8 125,711 - HMPREF1078_RS13430 0.74 -2.2 125,711 - HMPREF1078_RS13430 0.74 -3.3 125,711 - HMPREF1078_RS13430 0.74 -0.9 125,765 - HMPREF1078_RS13430 0.78 -1.2 125,903 - HMPREF1078_RS13430 0.88 -0.6 125,905 - HMPREF1078_RS13430 0.88 -1.3 125,905 - HMPREF1078_RS13430 0.88 -1.7 125,908 - HMPREF1078_RS13430 0.88 -0.8 125,976 - -0.4 125,976 - -1.5 126,020 - -2.7 126,050 - -0.4 126,076 - +0.2 126,076 - -1.5 126,076 - -2.3 126,086 - -1.2 126,108 - -1.4 126,184 - -1.0 126,290 - HMPREF1078_RS13435 0.12 -3.4 126,351 - HMPREF1078_RS13435 0.15 -2.2 126,389 - HMPREF1078_RS13435 0.18 -2.7 126,403 - HMPREF1078_RS13435 0.19 -4.0 126,403 - HMPREF1078_RS13435 0.19 -3.2 126,403 - HMPREF1078_RS13435 0.19 -2.2 126,474 - HMPREF1078_RS13435 0.23 +1.2 126,474 - HMPREF1078_RS13435 0.23 -1.7 126,520 - HMPREF1078_RS13435 0.26 -2.6 126,600 - HMPREF1078_RS13435 0.31 +1.2 126,681 - HMPREF1078_RS13435 0.36 -3.5 126,681 - HMPREF1078_RS13435 0.36 -1.0 126,681 - HMPREF1078_RS13435 0.36 -3.5 126,681 - HMPREF1078_RS13435 0.36 -4.3 126,795 - HMPREF1078_RS13435 0.44 -0.4 126,795 - HMPREF1078_RS13435 0.44 -3.9 126,797 - HMPREF1078_RS13435 0.44 +1.2 126,797 - HMPREF1078_RS13435 0.44 -1.6 126,797 - HMPREF1078_RS13435 0.44 -1.8 126,797 - HMPREF1078_RS13435 0.44 +0.2 126,814 - HMPREF1078_RS13435 0.45 -4.1 126,883 - HMPREF1078_RS13435 0.49 -0.7 127,027 - HMPREF1078_RS13435 0.58 -0.8 127,036 - HMPREF1078_RS13435 0.59 -2.2
Or see this region's nucleotide sequence