Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS13100 and HMPREF1078_RS13105 overlap by 7 nucleotides HMPREF1078_RS13105 and HMPREF1078_RS13110 are separated by 38 nucleotides HMPREF1078_RS13110 and HMPREF1078_RS13115 are separated by 93 nucleotides
HMPREF1078_RS13100: HMPREF1078_RS13100 - YIP1 family protein, at 46,170 to 46,760
_RS13100
HMPREF1078_RS13105: HMPREF1078_RS13105 - HAD hydrolase-like protein, at 46,754 to 47,410
_RS13105
HMPREF1078_RS13110: HMPREF1078_RS13110 - gamma carbonic anhydrase family protein, at 47,449 to 47,970
_RS13110
HMPREF1078_RS13115: HMPREF1078_RS13115 - aminopeptidase P family protein, at 48,064 to 49,854
_RS13115
Position (kb) 47
48 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 46.511 kb on + strand, within HMPREF1078_RS13100 at 46.531 kb on + strand, within HMPREF1078_RS13100 at 46.756 kb on - strand at 46.756 kb on - strand at 46.801 kb on + strand at 46.946 kb on - strand, within HMPREF1078_RS13105 at 46.959 kb on - strand, within HMPREF1078_RS13105 at 46.984 kb on + strand, within HMPREF1078_RS13105 at 47.028 kb on + strand, within HMPREF1078_RS13105 at 47.046 kb on + strand, within HMPREF1078_RS13105 at 47.164 kb on - strand, within HMPREF1078_RS13105 at 47.236 kb on - strand, within HMPREF1078_RS13105 at 47.282 kb on + strand, within HMPREF1078_RS13105 at 47.282 kb on + strand, within HMPREF1078_RS13105 at 47.306 kb on + strand, within HMPREF1078_RS13105 at 47.394 kb on + strand at 47.395 kb on - strand at 47.395 kb on - strand at 47.395 kb on - strand at 47.420 kb on + strand at 47.421 kb on - strand at 47.427 kb on + strand at 47.486 kb on + strand at 47.692 kb on + strand, within HMPREF1078_RS13110 at 47.794 kb on + strand, within HMPREF1078_RS13110 at 47.795 kb on - strand, within HMPREF1078_RS13110 at 47.796 kb on + strand, within HMPREF1078_RS13110 at 47.951 kb on - strand at 47.951 kb on - strand at 47.990 kb on - strand at 47.990 kb on - strand at 48.038 kb on - strand at 48.065 kb on + strand at 48.134 kb on + strand at 48.149 kb on + strand at 48.150 kb on - strand at 48.150 kb on - strand at 48.208 kb on - strand at 48.215 kb on + strand at 48.216 kb on - strand at 48.216 kb on - strand at 48.220 kb on + strand at 48.221 kb on - strand at 48.221 kb on - strand at 48.221 kb on - strand at 48.288 kb on + strand, within HMPREF1078_RS13115 at 48.288 kb on + strand, within HMPREF1078_RS13115 at 48.289 kb on - strand, within HMPREF1078_RS13115 at 48.324 kb on - strand, within HMPREF1078_RS13115 at 48.410 kb on - strand, within HMPREF1078_RS13115 at 48.410 kb on - strand, within HMPREF1078_RS13115 at 48.669 kb on - strand, within HMPREF1078_RS13115 at 48.722 kb on - strand, within HMPREF1078_RS13115 at 48.743 kb on + strand, within HMPREF1078_RS13115 at 48.752 kb on - strand, within HMPREF1078_RS13115 at 48.752 kb on - strand, within HMPREF1078_RS13115 at 48.752 kb on - strand, within HMPREF1078_RS13115 at 48.926 kb on - strand, within HMPREF1078_RS13115
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day4 remove 46,511 + HMPREF1078_RS13100 0.58 -0.4 46,531 + HMPREF1078_RS13100 0.61 +1.2 46,756 - +2.2 46,756 - +0.3 46,801 + +0.7 46,946 - HMPREF1078_RS13105 0.29 -0.6 46,959 - HMPREF1078_RS13105 0.31 +0.3 46,984 + HMPREF1078_RS13105 0.35 -0.5 47,028 + HMPREF1078_RS13105 0.42 +0.7 47,046 + HMPREF1078_RS13105 0.44 +0.6 47,164 - HMPREF1078_RS13105 0.62 -1.2 47,236 - HMPREF1078_RS13105 0.73 +0.8 47,282 + HMPREF1078_RS13105 0.80 -0.7 47,282 + HMPREF1078_RS13105 0.80 +0.6 47,306 + HMPREF1078_RS13105 0.84 +0.8 47,394 + +0.9 47,395 - +0.7 47,395 - +1.5 47,395 - +0.2 47,420 + -2.9 47,421 - +0.6 47,427 + +1.6 47,486 + +0.2 47,692 + HMPREF1078_RS13110 0.47 -0.8 47,794 + HMPREF1078_RS13110 0.66 -1.2 47,795 - HMPREF1078_RS13110 0.66 -0.8 47,796 + HMPREF1078_RS13110 0.66 -0.8 47,951 - -1.2 47,951 - -0.4 47,990 - +1.4 47,990 - +0.4 48,038 - -0.7 48,065 + +0.2 48,134 + -0.4 48,149 + -0.8 48,150 - +0.9 48,150 - +2.7 48,208 - +0.0 48,215 + +1.2 48,216 - +0.8 48,216 - +1.6 48,220 + -0.4 48,221 - +1.6 48,221 - +1.2 48,221 - +1.4 48,288 + HMPREF1078_RS13115 0.13 +0.2 48,288 + HMPREF1078_RS13115 0.13 -1.7 48,289 - HMPREF1078_RS13115 0.13 +0.9 48,324 - HMPREF1078_RS13115 0.15 -0.6 48,410 - HMPREF1078_RS13115 0.19 +1.8 48,410 - HMPREF1078_RS13115 0.19 +0.3 48,669 - HMPREF1078_RS13115 0.34 +0.0 48,722 - HMPREF1078_RS13115 0.37 +1.2 48,743 + HMPREF1078_RS13115 0.38 -0.8 48,752 - HMPREF1078_RS13115 0.38 -0.1 48,752 - HMPREF1078_RS13115 0.38 -0.5 48,752 - HMPREF1078_RS13115 0.38 -2.2 48,926 - HMPREF1078_RS13115 0.48 -0.8
Or see this region's nucleotide sequence