Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS12620 and HMPREF1078_RS12625 are separated by 222 nucleotides HMPREF1078_RS12625 and HMPREF1078_RS12630 are separated by 108 nucleotides
HMPREF1078_RS12620: HMPREF1078_RS12620 - MFS transporter, at 544,794 to 546,026
_RS12620
HMPREF1078_RS12625: HMPREF1078_RS12625 - hybrid sensor histidine kinase/response regulator transcription factor, at 546,249 to 550,217
_RS12625
HMPREF1078_RS12630: HMPREF1078_RS12630 - 1-acyl-sn-glycerol-3-phosphate acyltransferase, at 550,326 to 551,483
_RS12630
Position (kb) 546
547
548
549
550
551 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 545.308 kb on + strand, within HMPREF1078_RS12620 at 545.308 kb on + strand, within HMPREF1078_RS12620 at 545.308 kb on + strand, within HMPREF1078_RS12620 at 545.310 kb on + strand, within HMPREF1078_RS12620 at 545.310 kb on + strand, within HMPREF1078_RS12620 at 545.311 kb on - strand, within HMPREF1078_RS12620 at 545.311 kb on - strand, within HMPREF1078_RS12620 at 545.311 kb on - strand, within HMPREF1078_RS12620 at 545.317 kb on + strand, within HMPREF1078_RS12620 at 545.317 kb on + strand, within HMPREF1078_RS12620 at 545.318 kb on - strand, within HMPREF1078_RS12620 at 545.412 kb on - strand, within HMPREF1078_RS12620 at 545.412 kb on - strand, within HMPREF1078_RS12620 at 545.412 kb on - strand, within HMPREF1078_RS12620 at 545.512 kb on + strand, within HMPREF1078_RS12620 at 545.513 kb on - strand, within HMPREF1078_RS12620 at 545.528 kb on + strand, within HMPREF1078_RS12620 at 545.613 kb on - strand, within HMPREF1078_RS12620 at 545.684 kb on + strand, within HMPREF1078_RS12620 at 545.712 kb on + strand, within HMPREF1078_RS12620 at 545.712 kb on + strand, within HMPREF1078_RS12620 at 545.712 kb on + strand, within HMPREF1078_RS12620 at 545.713 kb on - strand, within HMPREF1078_RS12620 at 545.713 kb on - strand, within HMPREF1078_RS12620 at 545.713 kb on - strand, within HMPREF1078_RS12620 at 545.775 kb on - strand, within HMPREF1078_RS12620 at 545.775 kb on - strand, within HMPREF1078_RS12620 at 545.781 kb on + strand, within HMPREF1078_RS12620 at 545.831 kb on + strand, within HMPREF1078_RS12620 at 545.872 kb on - strand, within HMPREF1078_RS12620 at 545.887 kb on + strand, within HMPREF1078_RS12620 at 545.887 kb on + strand, within HMPREF1078_RS12620 at 545.888 kb on - strand, within HMPREF1078_RS12620 at 545.917 kb on + strand at 545.954 kb on + strand at 545.955 kb on - strand at 545.955 kb on - strand at 545.956 kb on + strand at 545.991 kb on - strand at 546.011 kb on + strand at 546.014 kb on + strand at 546.020 kb on + strand at 546.026 kb on + strand at 546.029 kb on + strand at 546.030 kb on - strand at 546.038 kb on - strand at 546.048 kb on + strand at 546.070 kb on - strand at 546.070 kb on - strand at 546.207 kb on + strand at 546.219 kb on + strand at 546.232 kb on + strand at 546.233 kb on - strand at 546.235 kb on + strand at 546.236 kb on - strand at 546.246 kb on + strand at 546.247 kb on - strand at 546.280 kb on + strand at 546.286 kb on + strand at 546.286 kb on + strand at 546.286 kb on + strand at 546.287 kb on - strand at 546.306 kb on + strand at 546.306 kb on + strand at 546.306 kb on + strand at 546.306 kb on + strand at 546.307 kb on - strand at 546.307 kb on - strand at 546.320 kb on + strand at 546.321 kb on - strand at 546.369 kb on - strand at 546.402 kb on + strand at 546.403 kb on - strand at 546.405 kb on - strand at 546.449 kb on + strand at 546.450 kb on - strand at 546.450 kb on - strand at 546.450 kb on - strand at 546.450 kb on - strand at 546.450 kb on - strand at 546.567 kb on + strand at 546.567 kb on + strand at 546.573 kb on + strand at 546.656 kb on + strand, within HMPREF1078_RS12625 at 546.662 kb on - strand, within HMPREF1078_RS12625 at 546.662 kb on - strand, within HMPREF1078_RS12625 at 546.720 kb on - strand, within HMPREF1078_RS12625 at 546.748 kb on - strand, within HMPREF1078_RS12625 at 546.779 kb on + strand, within HMPREF1078_RS12625 at 546.898 kb on + strand, within HMPREF1078_RS12625 at 546.901 kb on - strand, within HMPREF1078_RS12625 at 546.927 kb on + strand, within HMPREF1078_RS12625 at 546.928 kb on - strand, within HMPREF1078_RS12625 at 546.958 kb on + strand, within HMPREF1078_RS12625 at 546.982 kb on - strand, within HMPREF1078_RS12625 at 546.982 kb on - strand, within HMPREF1078_RS12625 at 547.016 kb on + strand, within HMPREF1078_RS12625 at 547.017 kb on - strand, within HMPREF1078_RS12625 at 547.088 kb on + strand, within HMPREF1078_RS12625 at 547.094 kb on + strand, within HMPREF1078_RS12625 at 547.115 kb on + strand, within HMPREF1078_RS12625 at 547.147 kb on - strand, within HMPREF1078_RS12625 at 547.327 kb on + strand, within HMPREF1078_RS12625 at 547.329 kb on + strand, within HMPREF1078_RS12625 at 547.329 kb on + strand, within HMPREF1078_RS12625 at 547.329 kb on + strand, within HMPREF1078_RS12625 at 547.329 kb on + strand, within HMPREF1078_RS12625 at 547.337 kb on + strand, within HMPREF1078_RS12625 at 547.338 kb on - strand, within HMPREF1078_RS12625 at 547.545 kb on + strand, within HMPREF1078_RS12625 at 547.624 kb on - strand, within HMPREF1078_RS12625 at 547.643 kb on + strand, within HMPREF1078_RS12625 at 547.643 kb on + strand, within HMPREF1078_RS12625 at 547.650 kb on - strand, within HMPREF1078_RS12625 at 547.653 kb on + strand, within HMPREF1078_RS12625 at 547.653 kb on + strand, within HMPREF1078_RS12625 at 547.719 kb on + strand, within HMPREF1078_RS12625 at 547.719 kb on + strand, within HMPREF1078_RS12625 at 547.720 kb on - strand, within HMPREF1078_RS12625 at 547.720 kb on - strand, within HMPREF1078_RS12625 at 547.800 kb on + strand, within HMPREF1078_RS12625 at 547.800 kb on + strand, within HMPREF1078_RS12625 at 547.801 kb on - strand, within HMPREF1078_RS12625 at 547.875 kb on - strand, within HMPREF1078_RS12625 at 547.875 kb on - strand, within HMPREF1078_RS12625 at 547.938 kb on + strand, within HMPREF1078_RS12625 at 547.938 kb on + strand, within HMPREF1078_RS12625 at 547.939 kb on - strand, within HMPREF1078_RS12625 at 547.939 kb on - strand, within HMPREF1078_RS12625 at 547.984 kb on + strand, within HMPREF1078_RS12625 at 547.985 kb on - strand, within HMPREF1078_RS12625 at 548.067 kb on + strand, within HMPREF1078_RS12625 at 548.109 kb on - strand, within HMPREF1078_RS12625 at 548.376 kb on + strand, within HMPREF1078_RS12625 at 548.376 kb on + strand, within HMPREF1078_RS12625 at 548.383 kb on - strand, within HMPREF1078_RS12625 at 548.396 kb on + strand, within HMPREF1078_RS12625 at 548.439 kb on + strand, within HMPREF1078_RS12625 at 548.439 kb on + strand, within HMPREF1078_RS12625 at 548.452 kb on + strand, within HMPREF1078_RS12625 at 548.453 kb on - strand, within HMPREF1078_RS12625 at 548.453 kb on - strand, within HMPREF1078_RS12625 at 548.571 kb on + strand, within HMPREF1078_RS12625 at 548.571 kb on + strand, within HMPREF1078_RS12625 at 548.572 kb on - strand, within HMPREF1078_RS12625 at 548.580 kb on + strand, within HMPREF1078_RS12625 at 548.580 kb on + strand, within HMPREF1078_RS12625 at 548.581 kb on - strand, within HMPREF1078_RS12625 at 548.581 kb on - strand, within HMPREF1078_RS12625 at 548.581 kb on - strand, within HMPREF1078_RS12625 at 548.581 kb on - strand, within HMPREF1078_RS12625 at 548.583 kb on - strand, within HMPREF1078_RS12625 at 548.655 kb on + strand, within HMPREF1078_RS12625 at 548.697 kb on + strand, within HMPREF1078_RS12625 at 548.899 kb on + strand, within HMPREF1078_RS12625 at 548.948 kb on - strand, within HMPREF1078_RS12625 at 549.029 kb on - strand, within HMPREF1078_RS12625 at 549.030 kb on + strand, within HMPREF1078_RS12625 at 549.030 kb on + strand, within HMPREF1078_RS12625 at 549.065 kb on - strand, within HMPREF1078_RS12625 at 549.119 kb on - strand, within HMPREF1078_RS12625 at 549.165 kb on - strand, within HMPREF1078_RS12625 at 549.208 kb on + strand, within HMPREF1078_RS12625 at 549.249 kb on - strand, within HMPREF1078_RS12625 at 549.308 kb on + strand, within HMPREF1078_RS12625 at 549.414 kb on - strand, within HMPREF1078_RS12625 at 549.427 kb on + strand, within HMPREF1078_RS12625 at 549.532 kb on + strand, within HMPREF1078_RS12625 at 549.534 kb on + strand, within HMPREF1078_RS12625 at 549.541 kb on + strand, within HMPREF1078_RS12625 at 549.577 kb on + strand, within HMPREF1078_RS12625 at 549.718 kb on + strand, within HMPREF1078_RS12625 at 549.719 kb on - strand, within HMPREF1078_RS12625 at 549.719 kb on - strand, within HMPREF1078_RS12625 at 549.719 kb on - strand, within HMPREF1078_RS12625 at 549.719 kb on - strand, within HMPREF1078_RS12625 at 549.830 kb on + strand at 549.832 kb on + strand at 549.832 kb on + strand at 549.833 kb on - strand at 549.833 kb on - strand at 549.857 kb on + strand at 549.858 kb on - strand at 549.860 kb on - strand at 549.882 kb on + strand at 549.885 kb on - strand at 549.961 kb on + strand at 549.965 kb on + strand at 550.005 kb on + strand at 550.006 kb on - strand at 550.057 kb on + strand at 550.057 kb on + strand at 550.057 kb on + strand at 550.127 kb on + strand at 550.167 kb on - strand at 550.232 kb on - strand at 550.247 kb on + strand at 550.247 kb on + strand at 550.248 kb on - strand at 550.328 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day4 remove 545,308 + HMPREF1078_RS12620 0.42 +1.9 545,308 + HMPREF1078_RS12620 0.42 +0.7 545,308 + HMPREF1078_RS12620 0.42 -0.1 545,310 + HMPREF1078_RS12620 0.42 -0.4 545,310 + HMPREF1078_RS12620 0.42 +2.2 545,311 - HMPREF1078_RS12620 0.42 +1.3 545,311 - HMPREF1078_RS12620 0.42 -1.8 545,311 - HMPREF1078_RS12620 0.42 +0.6 545,317 + HMPREF1078_RS12620 0.42 +0.2 545,317 + HMPREF1078_RS12620 0.42 +0.3 545,318 - HMPREF1078_RS12620 0.42 -1.4 545,412 - HMPREF1078_RS12620 0.50 -0.1 545,412 - HMPREF1078_RS12620 0.50 -0.0 545,412 - HMPREF1078_RS12620 0.50 +0.6 545,512 + HMPREF1078_RS12620 0.58 +0.8 545,513 - HMPREF1078_RS12620 0.58 -1.3 545,528 + HMPREF1078_RS12620 0.60 +1.0 545,613 - HMPREF1078_RS12620 0.66 +0.4 545,684 + HMPREF1078_RS12620 0.72 +2.2 545,712 + HMPREF1078_RS12620 0.74 -0.7 545,712 + HMPREF1078_RS12620 0.74 +0.6 545,712 + HMPREF1078_RS12620 0.74 +1.7 545,713 - HMPREF1078_RS12620 0.75 -0.2 545,713 - HMPREF1078_RS12620 0.75 -1.4 545,713 - HMPREF1078_RS12620 0.75 -1.5 545,775 - HMPREF1078_RS12620 0.80 -0.8 545,775 - HMPREF1078_RS12620 0.80 +1.5 545,781 + HMPREF1078_RS12620 0.80 -1.0 545,831 + HMPREF1078_RS12620 0.84 +1.2 545,872 - HMPREF1078_RS12620 0.87 +0.2 545,887 + HMPREF1078_RS12620 0.89 -1.4 545,887 + HMPREF1078_RS12620 0.89 +0.2 545,888 - HMPREF1078_RS12620 0.89 +2.6 545,917 + +0.2 545,954 + +0.0 545,955 - -0.1 545,955 - +0.0 545,956 + +0.2 545,991 - -0.4 546,011 + -0.3 546,014 + -1.7 546,020 + -1.4 546,026 + +0.8 546,029 + +0.7 546,030 - +1.0 546,038 - +1.1 546,048 + -0.4 546,070 - +0.2 546,070 - +1.3 546,207 + +0.5 546,219 + -0.0 546,232 + -1.2 546,233 - -0.3 546,235 + -1.4 546,236 - -1.7 546,246 + -1.8 546,247 - -1.3 546,280 + -0.4 546,286 + -1.2 546,286 + -1.7 546,286 + -1.6 546,287 - -1.8 546,306 + -0.8 546,306 + -4.5 546,306 + -3.4 546,306 + -3.2 546,307 - -2.7 546,307 - -1.2 546,320 + -1.4 546,321 - -2.0 546,369 - -0.4 546,402 + -3.2 546,403 - -4.2 546,405 - +0.8 546,449 + -2.0 546,450 - -3.6 546,450 - -2.4 546,450 - -1.6 546,450 - +0.7 546,450 - -1.8 546,567 + -3.3 546,567 + -1.0 546,573 + -3.3 546,656 + HMPREF1078_RS12625 0.10 -1.2 546,662 - HMPREF1078_RS12625 0.10 -0.6 546,662 - HMPREF1078_RS12625 0.10 -3.3 546,720 - HMPREF1078_RS12625 0.12 -1.3 546,748 - HMPREF1078_RS12625 0.13 -1.2 546,779 + HMPREF1078_RS12625 0.13 -2.0 546,898 + HMPREF1078_RS12625 0.16 -0.8 546,901 - HMPREF1078_RS12625 0.16 -2.0 546,927 + HMPREF1078_RS12625 0.17 -0.1 546,928 - HMPREF1078_RS12625 0.17 -0.8 546,958 + HMPREF1078_RS12625 0.18 -2.0 546,982 - HMPREF1078_RS12625 0.18 -1.4 546,982 - HMPREF1078_RS12625 0.18 -1.4 547,016 + HMPREF1078_RS12625 0.19 -0.8 547,017 - HMPREF1078_RS12625 0.19 -1.9 547,088 + HMPREF1078_RS12625 0.21 -1.0 547,094 + HMPREF1078_RS12625 0.21 -1.3 547,115 + HMPREF1078_RS12625 0.22 -2.7 547,147 - HMPREF1078_RS12625 0.23 -1.8 547,327 + HMPREF1078_RS12625 0.27 -2.0 547,329 + HMPREF1078_RS12625 0.27 -2.8 547,329 + HMPREF1078_RS12625 0.27 -3.0 547,329 + HMPREF1078_RS12625 0.27 -3.2 547,329 + HMPREF1078_RS12625 0.27 -2.7 547,337 + HMPREF1078_RS12625 0.27 -2.0 547,338 - HMPREF1078_RS12625 0.27 -2.4 547,545 + HMPREF1078_RS12625 0.33 -2.0 547,624 - HMPREF1078_RS12625 0.35 +0.2 547,643 + HMPREF1078_RS12625 0.35 -2.2 547,643 + HMPREF1078_RS12625 0.35 -0.4 547,650 - HMPREF1078_RS12625 0.35 -2.8 547,653 + HMPREF1078_RS12625 0.35 -2.8 547,653 + HMPREF1078_RS12625 0.35 -1.7 547,719 + HMPREF1078_RS12625 0.37 -1.4 547,719 + HMPREF1078_RS12625 0.37 -1.2 547,720 - HMPREF1078_RS12625 0.37 -2.0 547,720 - HMPREF1078_RS12625 0.37 -2.8 547,800 + HMPREF1078_RS12625 0.39 -0.2 547,800 + HMPREF1078_RS12625 0.39 -0.3 547,801 - HMPREF1078_RS12625 0.39 -0.8 547,875 - HMPREF1078_RS12625 0.41 -1.6 547,875 - HMPREF1078_RS12625 0.41 -4.1 547,938 + HMPREF1078_RS12625 0.43 -3.2 547,938 + HMPREF1078_RS12625 0.43 -2.0 547,939 - HMPREF1078_RS12625 0.43 -3.9 547,939 - HMPREF1078_RS12625 0.43 -0.7 547,984 + HMPREF1078_RS12625 0.44 -1.5 547,985 - HMPREF1078_RS12625 0.44 -2.5 548,067 + HMPREF1078_RS12625 0.46 -2.8 548,109 - HMPREF1078_RS12625 0.47 +0.2 548,376 + HMPREF1078_RS12625 0.54 +0.0 548,376 + HMPREF1078_RS12625 0.54 -1.7 548,383 - HMPREF1078_RS12625 0.54 -2.5 548,396 + HMPREF1078_RS12625 0.54 -0.8 548,439 + HMPREF1078_RS12625 0.55 -1.4 548,439 + HMPREF1078_RS12625 0.55 -1.8 548,452 + HMPREF1078_RS12625 0.56 -0.8 548,453 - HMPREF1078_RS12625 0.56 -0.8 548,453 - HMPREF1078_RS12625 0.56 -1.2 548,571 + HMPREF1078_RS12625 0.59 -0.7 548,571 + HMPREF1078_RS12625 0.59 -1.8 548,572 - HMPREF1078_RS12625 0.59 -2.3 548,580 + HMPREF1078_RS12625 0.59 -1.7 548,580 + HMPREF1078_RS12625 0.59 -1.6 548,581 - HMPREF1078_RS12625 0.59 -1.8 548,581 - HMPREF1078_RS12625 0.59 -0.9 548,581 - HMPREF1078_RS12625 0.59 -2.9 548,581 - HMPREF1078_RS12625 0.59 -3.3 548,583 - HMPREF1078_RS12625 0.59 -2.8 548,655 + HMPREF1078_RS12625 0.61 -1.2 548,697 + HMPREF1078_RS12625 0.62 -2.8 548,899 + HMPREF1078_RS12625 0.67 -1.4 548,948 - HMPREF1078_RS12625 0.68 -1.7 549,029 - HMPREF1078_RS12625 0.70 -2.2 549,030 + HMPREF1078_RS12625 0.70 -3.2 549,030 + HMPREF1078_RS12625 0.70 -2.2 549,065 - HMPREF1078_RS12625 0.71 -2.8 549,119 - HMPREF1078_RS12625 0.72 -3.6 549,165 - HMPREF1078_RS12625 0.73 -1.2 549,208 + HMPREF1078_RS12625 0.75 -2.2 549,249 - HMPREF1078_RS12625 0.76 -0.8 549,308 + HMPREF1078_RS12625 0.77 -2.8 549,414 - HMPREF1078_RS12625 0.80 -2.8 549,427 + HMPREF1078_RS12625 0.80 -2.7 549,532 + HMPREF1078_RS12625 0.83 -3.4 549,534 + HMPREF1078_RS12625 0.83 -2.1 549,541 + HMPREF1078_RS12625 0.83 -3.1 549,577 + HMPREF1078_RS12625 0.84 -2.3 549,718 + HMPREF1078_RS12625 0.87 -1.7 549,719 - HMPREF1078_RS12625 0.87 -2.3 549,719 - HMPREF1078_RS12625 0.87 -2.5 549,719 - HMPREF1078_RS12625 0.87 -1.4 549,719 - HMPREF1078_RS12625 0.87 -0.2 549,830 + -1.2 549,832 + -2.0 549,832 + -2.7 549,833 - -1.8 549,833 - -2.8 549,857 + -4.2 549,858 - -1.3 549,860 - -1.2 549,882 + -1.2 549,885 - -2.0 549,961 + -2.9 549,965 + -1.4 550,005 + -0.9 550,006 - -3.2 550,057 + -2.0 550,057 + -0.8 550,057 + -2.2 550,127 + +1.2 550,167 - -1.8 550,232 - +0.9 550,247 + -0.4 550,247 + -2.0 550,248 - -0.3 550,328 - +0.1
Or see this region's nucleotide sequence