Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS11820

Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1078_RS11815 and HMPREF1078_RS11820 are separated by 10 nucleotidesHMPREF1078_RS11820 and HMPREF1078_RS11825 are separated by 14 nucleotides HMPREF1078_RS11815: HMPREF1078_RS11815 - gamma-glutamyl-gamma-aminobutyrate hydrolase family protein, at 305,101 to 306,879 _RS11815 HMPREF1078_RS11820: HMPREF1078_RS11820 - M28 family peptidase, at 306,890 to 307,888 _RS11820 HMPREF1078_RS11825: HMPREF1078_RS11825 - SufE family protein, at 307,903 to 308,331 _RS11825 Position (kb) 306 307 308Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2 3at 305.896 kb on + strand, within HMPREF1078_RS11815at 306.080 kb on + strand, within HMPREF1078_RS11815at 306.147 kb on + strand, within HMPREF1078_RS11815at 306.153 kb on + strand, within HMPREF1078_RS11815at 306.153 kb on + strand, within HMPREF1078_RS11815at 306.153 kb on + strand, within HMPREF1078_RS11815at 306.153 kb on + strand, within HMPREF1078_RS11815at 306.238 kb on + strand, within HMPREF1078_RS11815at 306.264 kb on + strand, within HMPREF1078_RS11815at 306.297 kb on + strand, within HMPREF1078_RS11815at 306.329 kb on + strand, within HMPREF1078_RS11815at 306.329 kb on + strand, within HMPREF1078_RS11815at 306.329 kb on + strand, within HMPREF1078_RS11815at 306.447 kb on + strand, within HMPREF1078_RS11815at 306.454 kb on + strand, within HMPREF1078_RS11815at 306.454 kb on + strand, within HMPREF1078_RS11815at 306.587 kb on + strand, within HMPREF1078_RS11815at 306.587 kb on + strand, within HMPREF1078_RS11815at 306.587 kb on + strand, within HMPREF1078_RS11815at 306.587 kb on + strand, within HMPREF1078_RS11815at 306.587 kb on + strand, within HMPREF1078_RS11815at 306.587 kb on + strand, within HMPREF1078_RS11815at 306.587 kb on + strand, within HMPREF1078_RS11815at 306.668 kb on + strand, within HMPREF1078_RS11815at 306.792 kb on + strandat 306.804 kb on + strandat 306.810 kb on + strandat 306.815 kb on + strandat 306.825 kb on + strandat 306.889 kb on + strandat 306.889 kb on + strandat 306.895 kb on + strandat 306.912 kb on + strandat 307.031 kb on + strand, within HMPREF1078_RS11820at 307.037 kb on + strand, within HMPREF1078_RS11820at 307.037 kb on + strand, within HMPREF1078_RS11820at 307.037 kb on + strand, within HMPREF1078_RS11820at 307.053 kb on + strand, within HMPREF1078_RS11820at 307.053 kb on + strand, within HMPREF1078_RS11820at 307.143 kb on + strand, within HMPREF1078_RS11820at 307.143 kb on + strand, within HMPREF1078_RS11820at 307.143 kb on + strand, within HMPREF1078_RS11820at 307.145 kb on + strand, within HMPREF1078_RS11820at 307.145 kb on + strand, within HMPREF1078_RS11820at 307.159 kb on + strand, within HMPREF1078_RS11820at 307.159 kb on + strand, within HMPREF1078_RS11820at 307.159 kb on + strand, within HMPREF1078_RS11820at 307.165 kb on + strand, within HMPREF1078_RS11820at 307.165 kb on + strand, within HMPREF1078_RS11820at 307.198 kb on + strand, within HMPREF1078_RS11820at 307.344 kb on + strand, within HMPREF1078_RS11820at 307.529 kb on + strand, within HMPREF1078_RS11820at 307.551 kb on + strand, within HMPREF1078_RS11820at 307.551 kb on + strand, within HMPREF1078_RS11820at 307.586 kb on + strand, within HMPREF1078_RS11820at 307.587 kb on + strand, within HMPREF1078_RS11820at 307.595 kb on + strand, within HMPREF1078_RS11820at 307.595 kb on + strand, within HMPREF1078_RS11820at 307.610 kb on + strand, within HMPREF1078_RS11820at 307.760 kb on + strand, within HMPREF1078_RS11820at 307.760 kb on + strand, within HMPREF1078_RS11820at 307.825 kb on + strandat 307.827 kb on + strandat 307.839 kb on + strandat 307.875 kb on + strandat 307.875 kb on + strandat 307.877 kb on + strandat 307.877 kb on + strandat 307.886 kb on + strandat 308.310 kb on + strandat 308.313 kb on + strandat 308.345 kb on + strandat 308.345 kb on + strandat 308.345 kb on + strandat 308.346 kb on - strandat 308.346 kb on - strandat 308.352 kb on - strandat 308.395 kb on - strandat 308.439 kb on + strandat 308.440 kb on - strandat 308.451 kb on - strandat 308.463 kb on - strandat 308.463 kb on - strandat 308.494 kb on + strandat 308.494 kb on + strandat 308.531 kb on + strandat 308.531 kb on + strandat 308.553 kb on + strandat 308.554 kb on - strandat 308.605 kb on - strandat 308.615 kb on + strandat 308.632 kb on - strandat 308.632 kb on - strandat 308.655 kb on - strandat 308.664 kb on + strandat 308.739 kb on + strandat 308.746 kb on + strandat 308.748 kb on + strandat 308.781 kb on + strandat 308.781 kb on + strandat 308.781 kb on + strandat 308.786 kb on + strandat 308.844 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day4
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305,896 + HMPREF1078_RS11815 0.45 -0.0
306,080 + HMPREF1078_RS11815 0.55 -1.4
306,147 + HMPREF1078_RS11815 0.59 -1.1
306,153 + HMPREF1078_RS11815 0.59 +0.8
306,153 + HMPREF1078_RS11815 0.59 +0.1
306,153 + HMPREF1078_RS11815 0.59 -0.2
306,153 + HMPREF1078_RS11815 0.59 -0.8
306,238 + HMPREF1078_RS11815 0.64 -1.7
306,264 + HMPREF1078_RS11815 0.65 +0.6
306,297 + HMPREF1078_RS11815 0.67 +2.9
306,329 + HMPREF1078_RS11815 0.69 -0.0
306,329 + HMPREF1078_RS11815 0.69 +0.6
306,329 + HMPREF1078_RS11815 0.69 +0.3
306,447 + HMPREF1078_RS11815 0.76 -2.2
306,454 + HMPREF1078_RS11815 0.76 -0.4
306,454 + HMPREF1078_RS11815 0.76 +1.1
306,587 + HMPREF1078_RS11815 0.84 -1.2
306,587 + HMPREF1078_RS11815 0.84 -1.7
306,587 + HMPREF1078_RS11815 0.84 +0.1
306,587 + HMPREF1078_RS11815 0.84 -3.7
306,587 + HMPREF1078_RS11815 0.84 -2.0
306,587 + HMPREF1078_RS11815 0.84 -0.2
306,587 + HMPREF1078_RS11815 0.84 +0.1
306,668 + HMPREF1078_RS11815 0.88 -2.7
306,792 + +0.1
306,804 + -0.9
306,810 + -1.4
306,815 + +1.7
306,825 + +1.0
306,889 + -2.1
306,889 + -0.6
306,895 + -3.8
306,912 + -2.4
307,031 + HMPREF1078_RS11820 0.14 -1.2
307,037 + HMPREF1078_RS11820 0.15 -1.9
307,037 + HMPREF1078_RS11820 0.15 -4.3
307,037 + HMPREF1078_RS11820 0.15 -3.9
307,053 + HMPREF1078_RS11820 0.16 -2.3
307,053 + HMPREF1078_RS11820 0.16 -2.0
307,143 + HMPREF1078_RS11820 0.25 +0.1
307,143 + HMPREF1078_RS11820 0.25 -2.8
307,143 + HMPREF1078_RS11820 0.25 -0.9
307,145 + HMPREF1078_RS11820 0.26 -0.4
307,145 + HMPREF1078_RS11820 0.26 -3.7
307,159 + HMPREF1078_RS11820 0.27 -3.4
307,159 + HMPREF1078_RS11820 0.27 -5.4
307,159 + HMPREF1078_RS11820 0.27 -3.4
307,165 + HMPREF1078_RS11820 0.28 -2.8
307,165 + HMPREF1078_RS11820 0.28 -2.9
307,198 + HMPREF1078_RS11820 0.31 -1.2
307,344 + HMPREF1078_RS11820 0.45 -2.3
307,529 + HMPREF1078_RS11820 0.64 -0.9
307,551 + HMPREF1078_RS11820 0.66 -2.2
307,551 + HMPREF1078_RS11820 0.66 -1.7
307,586 + HMPREF1078_RS11820 0.70 -3.5
307,587 + HMPREF1078_RS11820 0.70 -2.6
307,595 + HMPREF1078_RS11820 0.71 -1.2
307,595 + HMPREF1078_RS11820 0.71 -3.1
307,610 + HMPREF1078_RS11820 0.72 -2.0
307,760 + HMPREF1078_RS11820 0.87 -2.9
307,760 + HMPREF1078_RS11820 0.87 -2.7
307,825 + -2.4
307,827 + +0.1
307,839 + -0.9
307,875 + -1.3
307,875 + -0.4
307,877 + -5.4
307,877 + -5.8
307,886 + +0.6
308,310 + +0.3
308,313 + -0.0
308,345 + -0.8
308,345 + +0.6
308,345 + -0.9
308,346 - -0.8
308,346 - -1.9
308,352 - -1.2
308,395 - -0.1
308,439 + +1.1
308,440 - -2.7
308,451 - -2.2
308,463 - -0.1
308,463 - +1.1
308,494 + -1.6
308,494 + +0.1
308,531 + +0.3
308,531 + +0.1
308,553 + +0.1
308,554 - -0.7
308,605 - +1.2
308,615 + -0.2
308,632 - -1.2
308,632 - +0.5
308,655 - -0.9
308,664 + +0.0
308,739 + +0.9
308,746 + +0.8
308,748 + -0.3
308,781 + +0.8
308,781 + -0.2
308,781 + -0.1
308,786 + -1.2
308,844 - -0.4

Or see this region's nucleotide sequence