Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS11285 and HMPREF1078_RS11290 are separated by 179 nucleotides HMPREF1078_RS11290 and HMPREF1078_RS11295 overlap by 4 nucleotides HMPREF1078_RS11295 and HMPREF1078_RS11300 overlap by 26 nucleotides
HMPREF1078_RS11285: HMPREF1078_RS11285 - bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD, at 179,467 to 180,510
_RS11285
HMPREF1078_RS11290: HMPREF1078_RS11290 - peptide chain release factor N(5)-glutamine methyltransferase, at 180,690 to 181,538
_RS11290
HMPREF1078_RS11295: HMPREF1078_RS11295 - regulatory protein RecX, at 181,535 to 182,026
_RS11295
HMPREF1078_RS11300: HMPREF1078_RS11300 - phosphoribosyltransferase family protein, at 182,001 to 182,693
_RS11300
Position (kb) 180
181
182 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 180.657 kb on + strand at 180.662 kb on + strand at 180.662 kb on + strand at 180.663 kb on - strand at 180.663 kb on - strand at 180.669 kb on - strand at 180.709 kb on - strand at 180.709 kb on - strand at 180.709 kb on - strand at 180.733 kb on + strand at 180.733 kb on + strand at 180.733 kb on + strand at 180.734 kb on - strand at 180.734 kb on - strand at 180.734 kb on - strand at 180.760 kb on + strand at 180.760 kb on + strand at 180.773 kb on + strand at 180.774 kb on - strand at 180.774 kb on - strand at 180.788 kb on + strand, within HMPREF1078_RS11290 at 180.788 kb on + strand, within HMPREF1078_RS11290 at 180.789 kb on - strand, within HMPREF1078_RS11290 at 180.792 kb on - strand, within HMPREF1078_RS11290 at 180.893 kb on + strand, within HMPREF1078_RS11290 at 180.900 kb on + strand, within HMPREF1078_RS11290 at 180.900 kb on + strand, within HMPREF1078_RS11290 at 180.900 kb on + strand, within HMPREF1078_RS11290 at 180.901 kb on - strand, within HMPREF1078_RS11290 at 180.904 kb on + strand, within HMPREF1078_RS11290 at 181.030 kb on + strand, within HMPREF1078_RS11290 at 181.031 kb on - strand, within HMPREF1078_RS11290 at 181.190 kb on + strand, within HMPREF1078_RS11290 at 181.190 kb on + strand, within HMPREF1078_RS11290 at 181.195 kb on + strand, within HMPREF1078_RS11290 at 181.260 kb on + strand, within HMPREF1078_RS11290 at 181.367 kb on + strand, within HMPREF1078_RS11290 at 181.368 kb on - strand, within HMPREF1078_RS11290 at 181.442 kb on + strand, within HMPREF1078_RS11290 at 181.442 kb on + strand, within HMPREF1078_RS11290 at 181.442 kb on + strand, within HMPREF1078_RS11290 at 181.473 kb on + strand at 181.474 kb on - strand at 181.474 kb on - strand at 181.485 kb on - strand at 181.680 kb on + strand, within HMPREF1078_RS11295 at 181.680 kb on + strand, within HMPREF1078_RS11295 at 181.681 kb on - strand, within HMPREF1078_RS11295 at 181.681 kb on - strand, within HMPREF1078_RS11295 at 181.681 kb on - strand, within HMPREF1078_RS11295 at 181.719 kb on - strand, within HMPREF1078_RS11295 at 181.804 kb on + strand, within HMPREF1078_RS11295 at 181.828 kb on + strand, within HMPREF1078_RS11295 at 181.844 kb on + strand, within HMPREF1078_RS11295 at 181.846 kb on + strand, within HMPREF1078_RS11295 at 182.096 kb on + strand, within HMPREF1078_RS11300 at 182.096 kb on + strand, within HMPREF1078_RS11300 at 182.096 kb on + strand, within HMPREF1078_RS11300 at 182.138 kb on + strand, within HMPREF1078_RS11300 at 182.262 kb on + strand, within HMPREF1078_RS11300 at 182.263 kb on - strand, within HMPREF1078_RS11300 at 182.316 kb on + strand, within HMPREF1078_RS11300 at 182.317 kb on - strand, within HMPREF1078_RS11300 at 182.399 kb on + strand, within HMPREF1078_RS11300 at 182.399 kb on + strand, within HMPREF1078_RS11300 at 182.400 kb on - strand, within HMPREF1078_RS11300 at 182.400 kb on - strand, within HMPREF1078_RS11300 at 182.400 kb on - strand, within HMPREF1078_RS11300 at 182.421 kb on + strand, within HMPREF1078_RS11300 at 182.530 kb on + strand, within HMPREF1078_RS11300
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day4 remove 180,657 + -0.5 180,662 + -0.9 180,662 + +1.1 180,663 - -1.9 180,663 - -3.0 180,669 - -2.8 180,709 - -2.9 180,709 - -2.6 180,709 - -0.5 180,733 + -3.5 180,733 + -1.9 180,733 + -2.9 180,734 - -2.0 180,734 - -2.5 180,734 - -0.7 180,760 + -0.5 180,760 + -2.3 180,773 + -1.2 180,774 - -3.1 180,774 - -0.5 180,788 + HMPREF1078_RS11290 0.12 -3.0 180,788 + HMPREF1078_RS11290 0.12 -2.8 180,789 - HMPREF1078_RS11290 0.12 +0.1 180,792 - HMPREF1078_RS11290 0.12 -1.7 180,893 + HMPREF1078_RS11290 0.24 -2.9 180,900 + HMPREF1078_RS11290 0.25 -2.7 180,900 + HMPREF1078_RS11290 0.25 -3.0 180,900 + HMPREF1078_RS11290 0.25 -2.7 180,901 - HMPREF1078_RS11290 0.25 -2.3 180,904 + HMPREF1078_RS11290 0.25 -2.3 181,030 + HMPREF1078_RS11290 0.40 -2.8 181,031 - HMPREF1078_RS11290 0.40 -2.0 181,190 + HMPREF1078_RS11290 0.59 -3.5 181,190 + HMPREF1078_RS11290 0.59 -1.9 181,195 + HMPREF1078_RS11290 0.59 -2.2 181,260 + HMPREF1078_RS11290 0.67 -3.3 181,367 + HMPREF1078_RS11290 0.80 -3.3 181,368 - HMPREF1078_RS11290 0.80 -2.9 181,442 + HMPREF1078_RS11290 0.89 +1.1 181,442 + HMPREF1078_RS11290 0.89 -3.3 181,442 + HMPREF1078_RS11290 0.89 -0.5 181,473 + -2.9 181,474 - -2.8 181,474 - -2.6 181,485 - -0.5 181,680 + HMPREF1078_RS11295 0.29 +1.0 181,680 + HMPREF1078_RS11295 0.29 +0.4 181,681 - HMPREF1078_RS11295 0.30 +1.1 181,681 - HMPREF1078_RS11295 0.30 +1.6 181,681 - HMPREF1078_RS11295 0.30 -1.1 181,719 - HMPREF1078_RS11295 0.37 -2.1 181,804 + HMPREF1078_RS11295 0.55 -0.9 181,828 + HMPREF1078_RS11295 0.60 -0.4 181,844 + HMPREF1078_RS11295 0.63 -2.8 181,846 + HMPREF1078_RS11295 0.63 +1.4 182,096 + HMPREF1078_RS11300 0.14 +0.1 182,096 + HMPREF1078_RS11300 0.14 -0.5 182,096 + HMPREF1078_RS11300 0.14 -2.3 182,138 + HMPREF1078_RS11300 0.20 -0.5 182,262 + HMPREF1078_RS11300 0.38 +1.1 182,263 - HMPREF1078_RS11300 0.38 -0.2 182,316 + HMPREF1078_RS11300 0.45 +0.1 182,317 - HMPREF1078_RS11300 0.46 -0.9 182,399 + HMPREF1078_RS11300 0.57 -0.9 182,399 + HMPREF1078_RS11300 0.57 -1.1 182,400 - HMPREF1078_RS11300 0.58 -0.3 182,400 - HMPREF1078_RS11300 0.58 -0.3 182,400 - HMPREF1078_RS11300 0.58 +1.5 182,421 + HMPREF1078_RS11300 0.61 -1.9 182,530 + HMPREF1078_RS11300 0.76 -1.1
Or see this region's nucleotide sequence