Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS11250 and HMPREF1078_RS11255 are separated by 153 nucleotides HMPREF1078_RS11255 and HMPREF1078_RS11260 are separated by 72 nucleotides HMPREF1078_RS11260 and HMPREF1078_RS11265 are separated by 208 nucleotides
HMPREF1078_RS11250: HMPREF1078_RS11250 - glutamate racemase, at 171,414 to 172,250
_RS11250
HMPREF1078_RS11255: HMPREF1078_RS11255 - OmpH family outer membrane protein, at 172,404 to 172,901
_RS11255
HMPREF1078_RS11260: HMPREF1078_RS11260 - OmpH family outer membrane protein, at 172,974 to 173,489
_RS11260
HMPREF1078_RS11265: HMPREF1078_RS11265 - outer membrane protein assembly factor BamA, at 173,698 to 176,385
_RS11265
Position (kb) 172
173
174 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 172.265 kb on - strand at 172.265 kb on - strand at 172.265 kb on - strand at 172.265 kb on - strand at 172.269 kb on - strand at 172.275 kb on - strand at 172.275 kb on - strand at 172.275 kb on - strand at 172.275 kb on - strand at 172.329 kb on - strand at 172.329 kb on - strand at 172.333 kb on - strand at 172.358 kb on - strand at 172.383 kb on - strand at 172.388 kb on - strand at 172.388 kb on - strand at 172.397 kb on - strand at 172.401 kb on - strand at 172.401 kb on - strand at 172.401 kb on - strand at 172.403 kb on - strand at 172.406 kb on - strand at 172.406 kb on - strand at 172.406 kb on - strand at 172.410 kb on - strand at 172.940 kb on - strand at 172.968 kb on - strand at 172.989 kb on + strand at 172.989 kb on + strand at 172.990 kb on - strand at 172.996 kb on - strand at 173.013 kb on + strand at 173.015 kb on + strand at 173.016 kb on - strand at 173.016 kb on - strand at 173.043 kb on - strand, within HMPREF1078_RS11260 at 173.078 kb on - strand, within HMPREF1078_RS11260 at 173.114 kb on - strand, within HMPREF1078_RS11260 at 173.114 kb on - strand, within HMPREF1078_RS11260 at 173.114 kb on - strand, within HMPREF1078_RS11260 at 173.186 kb on + strand, within HMPREF1078_RS11260 at 173.265 kb on + strand, within HMPREF1078_RS11260 at 173.265 kb on + strand, within HMPREF1078_RS11260 at 173.266 kb on - strand, within HMPREF1078_RS11260 at 173.290 kb on + strand, within HMPREF1078_RS11260 at 173.291 kb on - strand, within HMPREF1078_RS11260 at 173.291 kb on - strand, within HMPREF1078_RS11260 at 173.397 kb on + strand, within HMPREF1078_RS11260 at 173.397 kb on + strand, within HMPREF1078_RS11260 at 173.397 kb on + strand, within HMPREF1078_RS11260 at 173.398 kb on - strand, within HMPREF1078_RS11260 at 173.399 kb on + strand, within HMPREF1078_RS11260 at 173.399 kb on + strand, within HMPREF1078_RS11260 at 173.399 kb on + strand, within HMPREF1078_RS11260 at 173.400 kb on - strand, within HMPREF1078_RS11260 at 173.400 kb on - strand, within HMPREF1078_RS11260 at 173.400 kb on - strand, within HMPREF1078_RS11260 at 173.400 kb on - strand, within HMPREF1078_RS11260 at 173.400 kb on - strand, within HMPREF1078_RS11260 at 173.400 kb on - strand, within HMPREF1078_RS11260 at 173.401 kb on + strand, within HMPREF1078_RS11260 at 173.401 kb on + strand, within HMPREF1078_RS11260 at 173.401 kb on + strand, within HMPREF1078_RS11260 at 173.408 kb on + strand, within HMPREF1078_RS11260 at 173.408 kb on + strand, within HMPREF1078_RS11260 at 173.408 kb on + strand, within HMPREF1078_RS11260 at 173.408 kb on + strand, within HMPREF1078_RS11260 at 173.409 kb on - strand, within HMPREF1078_RS11260 at 173.409 kb on - strand, within HMPREF1078_RS11260 at 173.412 kb on + strand, within HMPREF1078_RS11260 at 173.412 kb on + strand, within HMPREF1078_RS11260 at 173.412 kb on + strand, within HMPREF1078_RS11260 at 173.413 kb on - strand, within HMPREF1078_RS11260 at 173.413 kb on - strand, within HMPREF1078_RS11260 at 173.413 kb on - strand, within HMPREF1078_RS11260 at 173.413 kb on - strand, within HMPREF1078_RS11260 at 173.470 kb on - strand at 173.470 kb on - strand at 173.477 kb on + strand at 173.489 kb on + strand at 173.489 kb on + strand at 173.502 kb on + strand at 173.504 kb on + strand at 173.505 kb on - strand at 173.505 kb on - strand at 173.509 kb on - strand at 173.509 kb on - strand at 173.575 kb on - strand at 173.580 kb on + strand at 173.673 kb on + strand at 173.673 kb on + strand at 173.688 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day4 remove 172,265 - +1.3 172,265 - -0.3 172,265 - +0.4 172,265 - +0.9 172,269 - +0.3 172,275 - +0.2 172,275 - -0.8 172,275 - +1.7 172,275 - -0.6 172,329 - -2.3 172,329 - -1.2 172,333 - +0.1 172,358 - +0.3 172,383 - -1.7 172,388 - -0.9 172,388 - -1.5 172,397 - +0.5 172,401 - -2.3 172,401 - -2.8 172,401 - -2.3 172,403 - -1.7 172,406 - -1.6 172,406 - -0.9 172,406 - -2.0 172,410 - -1.5 172,940 - -1.2 172,968 - -1.1 172,989 + -2.0 172,989 + -0.5 172,990 - -0.7 172,996 - +1.1 173,013 + -2.3 173,015 + +0.1 173,016 - -2.0 173,016 - +2.3 173,043 - HMPREF1078_RS11260 0.13 -2.0 173,078 - HMPREF1078_RS11260 0.20 -1.5 173,114 - HMPREF1078_RS11260 0.27 -0.9 173,114 - HMPREF1078_RS11260 0.27 -1.2 173,114 - HMPREF1078_RS11260 0.27 -2.7 173,186 + HMPREF1078_RS11260 0.41 -2.3 173,265 + HMPREF1078_RS11260 0.56 -2.0 173,265 + HMPREF1078_RS11260 0.56 -1.5 173,266 - HMPREF1078_RS11260 0.57 -1.2 173,290 + HMPREF1078_RS11260 0.61 -2.0 173,291 - HMPREF1078_RS11260 0.61 -1.2 173,291 - HMPREF1078_RS11260 0.61 -0.9 173,397 + HMPREF1078_RS11260 0.82 +1.1 173,397 + HMPREF1078_RS11260 0.82 -1.7 173,397 + HMPREF1078_RS11260 0.82 -1.5 173,398 - HMPREF1078_RS11260 0.82 -0.9 173,399 + HMPREF1078_RS11260 0.82 -1.5 173,399 + HMPREF1078_RS11260 0.82 -2.3 173,399 + HMPREF1078_RS11260 0.82 -1.7 173,400 - HMPREF1078_RS11260 0.83 -3.5 173,400 - HMPREF1078_RS11260 0.83 -1.9 173,400 - HMPREF1078_RS11260 0.83 -0.5 173,400 - HMPREF1078_RS11260 0.83 -3.0 173,400 - HMPREF1078_RS11260 0.83 -3.9 173,400 - HMPREF1078_RS11260 0.83 -2.0 173,401 + HMPREF1078_RS11260 0.83 -0.9 173,401 + HMPREF1078_RS11260 0.83 -2.0 173,401 + HMPREF1078_RS11260 0.83 -1.7 173,408 + HMPREF1078_RS11260 0.84 -1.0 173,408 + HMPREF1078_RS11260 0.84 -0.9 173,408 + HMPREF1078_RS11260 0.84 -0.5 173,408 + HMPREF1078_RS11260 0.84 +1.1 173,409 - HMPREF1078_RS11260 0.84 -2.8 173,409 - HMPREF1078_RS11260 0.84 -0.5 173,412 + HMPREF1078_RS11260 0.85 -1.5 173,412 + HMPREF1078_RS11260 0.85 -2.9 173,412 + HMPREF1078_RS11260 0.85 -1.2 173,413 - HMPREF1078_RS11260 0.85 -0.5 173,413 - HMPREF1078_RS11260 0.85 -0.5 173,413 - HMPREF1078_RS11260 0.85 -2.3 173,413 - HMPREF1078_RS11260 0.85 -1.2 173,470 - -1.7 173,470 - -2.7 173,477 + -2.2 173,489 + -1.2 173,489 + -1.7 173,502 + -1.7 173,504 + -1.9 173,505 - +0.2 173,505 - -3.5 173,509 - +1.1 173,509 - +0.3 173,575 - +1.1 173,580 + -1.7 173,673 + -0.9 173,673 + +2.0 173,688 - +2.7
Or see this region's nucleotide sequence