Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS11125 and HMPREF1078_RS11130 are separated by 81 nucleotides HMPREF1078_RS11130 and HMPREF1078_RS11135 are separated by 9 nucleotides HMPREF1078_RS11135 and HMPREF1078_RS11140 are separated by 32 nucleotides HMPREF1078_RS11140 and HMPREF1078_RS11145 overlap by 1 nucleotides
HMPREF1078_RS11125: HMPREF1078_RS11125 - tRNA-Ser, at 149,227 to 149,314
_RS11125
HMPREF1078_RS11130: HMPREF1078_RS11130 - MotA/TolQ/ExbB proton channel family protein, at 149,396 to 150,133
_RS11130
HMPREF1078_RS11135: HMPREF1078_RS11135 - hypothetical protein, at 150,143 to 150,616
_RS11135
HMPREF1078_RS11140: HMPREF1078_RS11140 - biopolymer transporter ExbD, at 150,649 to 151,236
_RS11140
HMPREF1078_RS11145: HMPREF1078_RS11145 - biopolymer transporter ExbD, at 151,236 to 151,703
_RS11145
Position (kb) 150
151 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 149.215 kb on + strand at 149.215 kb on + strand at 149.318 kb on + strand at 150.269 kb on + strand, within HMPREF1078_RS11135 at 150.411 kb on + strand, within HMPREF1078_RS11135 at 150.468 kb on + strand, within HMPREF1078_RS11135 at 150.468 kb on + strand, within HMPREF1078_RS11135 at 150.529 kb on + strand, within HMPREF1078_RS11135 at 150.529 kb on + strand, within HMPREF1078_RS11135 at 150.529 kb on + strand, within HMPREF1078_RS11135 at 150.617 kb on + strand at 150.617 kb on + strand at 150.620 kb on + strand at 150.620 kb on + strand at 150.620 kb on + strand at 151.219 kb on + strand at 151.227 kb on + strand at 151.227 kb on + strand at 151.227 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day4 remove 149,215 + -1.9 149,215 + -3.5 149,318 + -2.0 150,269 + HMPREF1078_RS11135 0.27 -0.9 150,411 + HMPREF1078_RS11135 0.57 -0.5 150,468 + HMPREF1078_RS11135 0.69 -1.2 150,468 + HMPREF1078_RS11135 0.69 +0.1 150,529 + HMPREF1078_RS11135 0.81 -0.9 150,529 + HMPREF1078_RS11135 0.81 +1.1 150,529 + HMPREF1078_RS11135 0.81 -1.2 150,617 + -3.3 150,617 + -2.6 150,620 + -5.1 150,620 + -5.5 150,620 + -2.7 151,219 + -0.9 151,227 + -2.8 151,227 + -2.7 151,227 + -0.5
Or see this region's nucleotide sequence