Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS10705

Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1078_RS10700 and HMPREF1078_RS10705 are separated by 58 nucleotidesHMPREF1078_RS10705 and HMPREF1078_RS10710 are separated by 6 nucleotides HMPREF1078_RS10700: HMPREF1078_RS10700 - MarC family protein, at 46,652 to 47,296 _RS10700 HMPREF1078_RS10705: HMPREF1078_RS10705 - PNGase F N-terminal domain-containing protein, at 47,355 to 48,599 _RS10705 HMPREF1078_RS10710: HMPREF1078_RS10710 - monomeric [FeFe] hydrogenase, at 48,606 to 50,051 _RS10710 Position (kb) 47 48 49Strain fitness (log2 ratio) -2 -1 0 1 2at 46.360 kb on - strandat 46.360 kb on - strandat 46.382 kb on - strandat 46.383 kb on + strandat 46.414 kb on - strandat 46.476 kb on - strandat 46.492 kb on + strandat 46.542 kb on - strandat 46.548 kb on + strandat 46.556 kb on + strandat 46.557 kb on - strandat 46.560 kb on - strandat 46.653 kb on + strandat 46.819 kb on - strand, within HMPREF1078_RS10700at 46.971 kb on + strand, within HMPREF1078_RS10700at 46.971 kb on + strand, within HMPREF1078_RS10700at 46.971 kb on + strand, within HMPREF1078_RS10700at 46.971 kb on + strand, within HMPREF1078_RS10700at 46.972 kb on - strand, within HMPREF1078_RS10700at 46.972 kb on - strand, within HMPREF1078_RS10700at 46.972 kb on - strand, within HMPREF1078_RS10700at 46.972 kb on - strand, within HMPREF1078_RS10700at 47.050 kb on - strand, within HMPREF1078_RS10700at 47.051 kb on - strand, within HMPREF1078_RS10700at 47.148 kb on - strand, within HMPREF1078_RS10700at 47.249 kb on - strandat 47.260 kb on + strandat 47.299 kb on + strandat 47.299 kb on + strandat 47.300 kb on - strandat 47.300 kb on - strandat 47.300 kb on - strandat 47.303 kb on - strandat 47.329 kb on + strandat 47.341 kb on - strandat 47.374 kb on + strandat 47.448 kb on - strandat 47.586 kb on - strand, within HMPREF1078_RS10705at 47.587 kb on + strand, within HMPREF1078_RS10705at 47.588 kb on - strand, within HMPREF1078_RS10705at 47.588 kb on - strand, within HMPREF1078_RS10705at 47.703 kb on + strand, within HMPREF1078_RS10705at 47.762 kb on + strand, within HMPREF1078_RS10705at 47.765 kb on - strand, within HMPREF1078_RS10705at 47.867 kb on + strand, within HMPREF1078_RS10705at 47.942 kb on + strand, within HMPREF1078_RS10705at 47.942 kb on + strand, within HMPREF1078_RS10705at 47.992 kb on + strand, within HMPREF1078_RS10705at 47.992 kb on + strand, within HMPREF1078_RS10705at 47.993 kb on - strand, within HMPREF1078_RS10705at 47.993 kb on - strand, within HMPREF1078_RS10705at 47.993 kb on - strand, within HMPREF1078_RS10705at 47.993 kb on - strand, within HMPREF1078_RS10705at 48.027 kb on + strand, within HMPREF1078_RS10705at 48.050 kb on + strand, within HMPREF1078_RS10705at 48.050 kb on + strand, within HMPREF1078_RS10705at 48.070 kb on + strand, within HMPREF1078_RS10705at 48.070 kb on + strand, within HMPREF1078_RS10705at 48.071 kb on - strand, within HMPREF1078_RS10705at 48.071 kb on - strand, within HMPREF1078_RS10705at 48.071 kb on - strand, within HMPREF1078_RS10705at 48.080 kb on + strand, within HMPREF1078_RS10705at 48.123 kb on + strand, within HMPREF1078_RS10705at 48.212 kb on + strand, within HMPREF1078_RS10705at 48.213 kb on - strand, within HMPREF1078_RS10705at 48.215 kb on + strand, within HMPREF1078_RS10705at 48.246 kb on + strand, within HMPREF1078_RS10705at 48.381 kb on + strand, within HMPREF1078_RS10705at 48.398 kb on + strand, within HMPREF1078_RS10705at 48.399 kb on - strand, within HMPREF1078_RS10705at 48.418 kb on + strand, within HMPREF1078_RS10705at 48.445 kb on + strand, within HMPREF1078_RS10705at 48.446 kb on - strand, within HMPREF1078_RS10705at 48.478 kb on - strandat 48.485 kb on + strandat 48.486 kb on - strandat 48.501 kb on + strandat 48.614 kb on + strandat 48.614 kb on + strandat 48.614 kb on + strandat 48.615 kb on - strandat 48.627 kb on - strandat 48.738 kb on - strandat 48.774 kb on - strand, within HMPREF1078_RS10710at 48.793 kb on + strand, within HMPREF1078_RS10710at 48.794 kb on + strand, within HMPREF1078_RS10710at 48.795 kb on - strand, within HMPREF1078_RS10710at 48.804 kb on - strand, within HMPREF1078_RS10710at 48.804 kb on - strand, within HMPREF1078_RS10710at 48.804 kb on - strand, within HMPREF1078_RS10710at 48.827 kb on - strand, within HMPREF1078_RS10710at 48.974 kb on + strand, within HMPREF1078_RS10710at 49.081 kb on + strand, within HMPREF1078_RS10710at 49.085 kb on - strand, within HMPREF1078_RS10710at 49.085 kb on - strand, within HMPREF1078_RS10710at 49.111 kb on + strand, within HMPREF1078_RS10710at 49.154 kb on - strand, within HMPREF1078_RS10710at 49.178 kb on + strand, within HMPREF1078_RS10710at 49.298 kb on - strand, within HMPREF1078_RS10710at 49.405 kb on - strand, within HMPREF1078_RS10710at 49.454 kb on - strand, within HMPREF1078_RS10710at 49.457 kb on + strand, within HMPREF1078_RS10710at 49.457 kb on + strand, within HMPREF1078_RS10710at 49.457 kb on + strand, within HMPREF1078_RS10710at 49.458 kb on - strand, within HMPREF1078_RS10710at 49.458 kb on - strand, within HMPREF1078_RS10710at 49.458 kb on - strand, within HMPREF1078_RS10710at 49.458 kb on - strand, within HMPREF1078_RS10710at 49.458 kb on - strand, within HMPREF1078_RS10710at 49.476 kb on - strand, within HMPREF1078_RS10710at 49.490 kb on - strand, within HMPREF1078_RS10710at 49.547 kb on - strand, within HMPREF1078_RS10710at 49.553 kb on + strand, within HMPREF1078_RS10710at 49.553 kb on + strand, within HMPREF1078_RS10710at 49.554 kb on - strand, within HMPREF1078_RS10710at 49.595 kb on + strand, within HMPREF1078_RS10710

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day4
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46,360 - -2.2
46,360 - +2.4
46,382 - -1.3
46,383 + +0.5
46,414 - +0.2
46,476 - -0.1
46,492 + -2.5
46,542 - -0.3
46,548 + +0.2
46,556 + -2.0
46,557 - -0.3
46,560 - -1.2
46,653 + +0.6
46,819 - HMPREF1078_RS10700 0.26 -0.1
46,971 + HMPREF1078_RS10700 0.49 -1.0
46,971 + HMPREF1078_RS10700 0.49 -1.5
46,971 + HMPREF1078_RS10700 0.49 +0.1
46,971 + HMPREF1078_RS10700 0.49 -0.6
46,972 - HMPREF1078_RS10700 0.50 -1.2
46,972 - HMPREF1078_RS10700 0.50 -0.0
46,972 - HMPREF1078_RS10700 0.50 -0.6
46,972 - HMPREF1078_RS10700 0.50 -2.2
47,050 - HMPREF1078_RS10700 0.62 +0.3
47,051 - HMPREF1078_RS10700 0.62 +0.4
47,148 - HMPREF1078_RS10700 0.77 +0.6
47,249 - -0.7
47,260 + +0.4
47,299 + +0.3
47,299 + +0.8
47,300 - +1.8
47,300 - +0.8
47,300 - -0.8
47,303 - +0.1
47,329 + +0.1
47,341 - +0.0
47,374 + -0.1
47,448 - +0.2
47,586 - HMPREF1078_RS10705 0.19 +1.1
47,587 + HMPREF1078_RS10705 0.19 +0.5
47,588 - HMPREF1078_RS10705 0.19 +0.7
47,588 - HMPREF1078_RS10705 0.19 +1.7
47,703 + HMPREF1078_RS10705 0.28 -1.7
47,762 + HMPREF1078_RS10705 0.33 -1.3
47,765 - HMPREF1078_RS10705 0.33 -0.2
47,867 + HMPREF1078_RS10705 0.41 -0.5
47,942 + HMPREF1078_RS10705 0.47 -1.7
47,942 + HMPREF1078_RS10705 0.47 +1.5
47,992 + HMPREF1078_RS10705 0.51 -1.7
47,992 + HMPREF1078_RS10705 0.51 +1.1
47,993 - HMPREF1078_RS10705 0.51 +1.8
47,993 - HMPREF1078_RS10705 0.51 -0.0
47,993 - HMPREF1078_RS10705 0.51 +1.0
47,993 - HMPREF1078_RS10705 0.51 -2.3
48,027 + HMPREF1078_RS10705 0.54 -0.0
48,050 + HMPREF1078_RS10705 0.56 -0.7
48,050 + HMPREF1078_RS10705 0.56 +0.9
48,070 + HMPREF1078_RS10705 0.57 +0.6
48,070 + HMPREF1078_RS10705 0.57 +0.6
48,071 - HMPREF1078_RS10705 0.58 +0.3
48,071 - HMPREF1078_RS10705 0.58 -0.9
48,071 - HMPREF1078_RS10705 0.58 +0.3
48,080 + HMPREF1078_RS10705 0.58 +0.7
48,123 + HMPREF1078_RS10705 0.62 +0.4
48,212 + HMPREF1078_RS10705 0.69 -0.0
48,213 - HMPREF1078_RS10705 0.69 -1.7
48,215 + HMPREF1078_RS10705 0.69 -0.2
48,246 + HMPREF1078_RS10705 0.72 +0.7
48,381 + HMPREF1078_RS10705 0.82 +0.3
48,398 + HMPREF1078_RS10705 0.84 +2.5
48,399 - HMPREF1078_RS10705 0.84 +1.3
48,418 + HMPREF1078_RS10705 0.85 -1.7
48,445 + HMPREF1078_RS10705 0.88 -0.9
48,446 - HMPREF1078_RS10705 0.88 -0.2
48,478 - +2.0
48,485 + -0.9
48,486 - +0.3
48,501 + -1.8
48,614 + +1.1
48,614 + -0.1
48,614 + -0.4
48,615 - -0.1
48,627 - +0.7
48,738 - +0.5
48,774 - HMPREF1078_RS10710 0.12 +0.2
48,793 + HMPREF1078_RS10710 0.13 -0.6
48,794 + HMPREF1078_RS10710 0.13 -0.5
48,795 - HMPREF1078_RS10710 0.13 +0.7
48,804 - HMPREF1078_RS10710 0.14 -1.9
48,804 - HMPREF1078_RS10710 0.14 -0.7
48,804 - HMPREF1078_RS10710 0.14 -1.3
48,827 - HMPREF1078_RS10710 0.15 +1.1
48,974 + HMPREF1078_RS10710 0.25 -0.9
49,081 + HMPREF1078_RS10710 0.33 +2.5
49,085 - HMPREF1078_RS10710 0.33 +0.3
49,085 - HMPREF1078_RS10710 0.33 +0.2
49,111 + HMPREF1078_RS10710 0.35 +1.3
49,154 - HMPREF1078_RS10710 0.38 +0.1
49,178 + HMPREF1078_RS10710 0.40 +1.5
49,298 - HMPREF1078_RS10710 0.48 +1.1
49,405 - HMPREF1078_RS10710 0.55 +0.9
49,454 - HMPREF1078_RS10710 0.59 -1.2
49,457 + HMPREF1078_RS10710 0.59 +0.6
49,457 + HMPREF1078_RS10710 0.59 -1.8
49,457 + HMPREF1078_RS10710 0.59 -0.0
49,458 - HMPREF1078_RS10710 0.59 -1.2
49,458 - HMPREF1078_RS10710 0.59 +2.1
49,458 - HMPREF1078_RS10710 0.59 -0.4
49,458 - HMPREF1078_RS10710 0.59 -0.8
49,458 - HMPREF1078_RS10710 0.59 +2.1
49,476 - HMPREF1078_RS10710 0.60 +1.1
49,490 - HMPREF1078_RS10710 0.61 -1.0
49,547 - HMPREF1078_RS10710 0.65 +1.6
49,553 + HMPREF1078_RS10710 0.65 +0.9
49,553 + HMPREF1078_RS10710 0.65 -1.0
49,554 - HMPREF1078_RS10710 0.66 -1.7
49,595 + HMPREF1078_RS10710 0.68 +0.1

Or see this region's nucleotide sequence