Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS10140 and HMPREF1078_RS10145 overlap by 4 nucleotides HMPREF1078_RS10145 and HMPREF1078_RS10150 are separated by 270 nucleotides
HMPREF1078_RS10140: HMPREF1078_RS10140 - nucleoside transporter C-terminal domain-containing protein, at 653,123 to 654,445
_RS10140
HMPREF1078_RS10145: HMPREF1078_RS10145 - bifunctional nuclease family protein, at 654,442 to 655,071
_RS10145
HMPREF1078_RS10150: HMPREF1078_RS10150 - M48 family metallopeptidase, at 655,342 to 656,142
_RS10150
Position (kb) 654
655
656 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 653.459 kb on - strand, within HMPREF1078_RS10140 at 653.469 kb on - strand, within HMPREF1078_RS10140 at 653.484 kb on - strand, within HMPREF1078_RS10140 at 653.522 kb on - strand, within HMPREF1078_RS10140 at 653.528 kb on + strand, within HMPREF1078_RS10140 at 653.552 kb on - strand, within HMPREF1078_RS10140 at 653.553 kb on + strand, within HMPREF1078_RS10140 at 653.553 kb on + strand, within HMPREF1078_RS10140 at 653.554 kb on - strand, within HMPREF1078_RS10140 at 653.579 kb on - strand, within HMPREF1078_RS10140 at 653.604 kb on - strand, within HMPREF1078_RS10140 at 653.609 kb on + strand, within HMPREF1078_RS10140 at 653.610 kb on - strand, within HMPREF1078_RS10140 at 653.645 kb on + strand, within HMPREF1078_RS10140 at 653.646 kb on - strand, within HMPREF1078_RS10140 at 653.646 kb on - strand, within HMPREF1078_RS10140 at 653.681 kb on + strand, within HMPREF1078_RS10140 at 653.770 kb on + strand, within HMPREF1078_RS10140 at 653.770 kb on + strand, within HMPREF1078_RS10140 at 653.770 kb on + strand, within HMPREF1078_RS10140 at 653.771 kb on - strand, within HMPREF1078_RS10140 at 653.854 kb on + strand, within HMPREF1078_RS10140 at 653.855 kb on - strand, within HMPREF1078_RS10140 at 653.855 kb on - strand, within HMPREF1078_RS10140 at 653.855 kb on - strand, within HMPREF1078_RS10140 at 653.860 kb on + strand, within HMPREF1078_RS10140 at 653.862 kb on + strand, within HMPREF1078_RS10140 at 653.863 kb on - strand, within HMPREF1078_RS10140 at 653.863 kb on - strand, within HMPREF1078_RS10140 at 653.919 kb on - strand, within HMPREF1078_RS10140 at 653.946 kb on + strand, within HMPREF1078_RS10140 at 654.042 kb on - strand, within HMPREF1078_RS10140 at 654.065 kb on + strand, within HMPREF1078_RS10140 at 654.090 kb on + strand, within HMPREF1078_RS10140 at 654.091 kb on - strand, within HMPREF1078_RS10140 at 654.098 kb on - strand, within HMPREF1078_RS10140 at 654.166 kb on + strand, within HMPREF1078_RS10140 at 654.166 kb on + strand, within HMPREF1078_RS10140 at 654.167 kb on - strand, within HMPREF1078_RS10140 at 654.182 kb on + strand, within HMPREF1078_RS10140 at 654.182 kb on + strand, within HMPREF1078_RS10140 at 654.183 kb on - strand, within HMPREF1078_RS10140 at 654.208 kb on + strand, within HMPREF1078_RS10140 at 654.273 kb on + strand, within HMPREF1078_RS10140 at 654.273 kb on + strand, within HMPREF1078_RS10140 at 654.274 kb on - strand, within HMPREF1078_RS10140 at 654.274 kb on - strand, within HMPREF1078_RS10140 at 654.274 kb on - strand, within HMPREF1078_RS10140 at 654.274 kb on - strand, within HMPREF1078_RS10140 at 654.274 kb on - strand, within HMPREF1078_RS10140 at 654.278 kb on + strand, within HMPREF1078_RS10140 at 654.278 kb on + strand, within HMPREF1078_RS10140 at 654.351 kb on + strand at 654.351 kb on + strand at 654.363 kb on + strand at 654.363 kb on + strand at 654.364 kb on - strand at 654.364 kb on - strand at 654.364 kb on - strand at 654.395 kb on + strand at 654.395 kb on + strand at 654.395 kb on + strand at 654.395 kb on + strand at 654.395 kb on + strand at 654.395 kb on + strand at 654.396 kb on - strand at 654.396 kb on - strand at 654.396 kb on - strand at 654.397 kb on + strand at 654.398 kb on - strand at 654.398 kb on - strand at 654.398 kb on - strand at 654.398 kb on - strand at 654.398 kb on - strand at 654.422 kb on - strand at 654.440 kb on + strand at 654.488 kb on + strand at 654.501 kb on - strand at 654.501 kb on - strand at 654.599 kb on - strand, within HMPREF1078_RS10145 at 654.703 kb on - strand, within HMPREF1078_RS10145 at 654.704 kb on + strand, within HMPREF1078_RS10145 at 654.704 kb on + strand, within HMPREF1078_RS10145 at 654.704 kb on + strand, within HMPREF1078_RS10145 at 654.704 kb on + strand, within HMPREF1078_RS10145 at 654.705 kb on - strand, within HMPREF1078_RS10145 at 654.705 kb on - strand, within HMPREF1078_RS10145 at 654.705 kb on - strand, within HMPREF1078_RS10145 at 654.705 kb on - strand, within HMPREF1078_RS10145 at 654.705 kb on - strand, within HMPREF1078_RS10145 at 654.776 kb on - strand, within HMPREF1078_RS10145 at 654.826 kb on - strand, within HMPREF1078_RS10145 at 654.826 kb on - strand, within HMPREF1078_RS10145 at 654.826 kb on - strand, within HMPREF1078_RS10145 at 654.828 kb on - strand, within HMPREF1078_RS10145 at 654.933 kb on + strand, within HMPREF1078_RS10145 at 654.934 kb on - strand, within HMPREF1078_RS10145 at 654.963 kb on + strand, within HMPREF1078_RS10145 at 654.963 kb on + strand, within HMPREF1078_RS10145 at 654.964 kb on - strand, within HMPREF1078_RS10145 at 654.964 kb on - strand, within HMPREF1078_RS10145 at 654.964 kb on - strand, within HMPREF1078_RS10145 at 654.968 kb on - strand, within HMPREF1078_RS10145 at 654.968 kb on - strand, within HMPREF1078_RS10145 at 654.968 kb on - strand, within HMPREF1078_RS10145 at 655.008 kb on - strand, within HMPREF1078_RS10145 at 655.021 kb on + strand at 655.021 kb on + strand at 655.066 kb on - strand at 655.066 kb on - strand at 655.066 kb on - strand at 655.066 kb on - strand at 655.074 kb on + strand at 655.075 kb on - strand at 655.079 kb on - strand at 655.087 kb on - strand at 655.104 kb on - strand at 655.110 kb on - strand at 655.110 kb on - strand at 655.210 kb on - strand at 655.215 kb on + strand at 655.216 kb on - strand at 655.216 kb on - strand at 655.216 kb on - strand at 655.287 kb on - strand at 655.359 kb on + strand at 655.359 kb on + strand at 655.360 kb on - strand at 655.360 kb on - strand at 655.361 kb on + strand at 655.488 kb on + strand, within HMPREF1078_RS10150 at 655.490 kb on + strand, within HMPREF1078_RS10150 at 655.490 kb on + strand, within HMPREF1078_RS10150 at 655.491 kb on - strand, within HMPREF1078_RS10150 at 655.491 kb on - strand, within HMPREF1078_RS10150 at 655.494 kb on + strand, within HMPREF1078_RS10150 at 655.494 kb on + strand, within HMPREF1078_RS10150 at 655.494 kb on + strand, within HMPREF1078_RS10150 at 655.495 kb on - strand, within HMPREF1078_RS10150 at 655.495 kb on - strand, within HMPREF1078_RS10150 at 655.495 kb on - strand, within HMPREF1078_RS10150 at 655.497 kb on + strand, within HMPREF1078_RS10150 at 655.497 kb on + strand, within HMPREF1078_RS10150 at 655.497 kb on + strand, within HMPREF1078_RS10150 at 655.497 kb on + strand, within HMPREF1078_RS10150 at 655.497 kb on + strand, within HMPREF1078_RS10150 at 655.498 kb on - strand, within HMPREF1078_RS10150 at 655.498 kb on - strand, within HMPREF1078_RS10150 at 655.498 kb on - strand, within HMPREF1078_RS10150 at 655.498 kb on - strand, within HMPREF1078_RS10150 at 655.498 kb on - strand, within HMPREF1078_RS10150 at 655.498 kb on - strand, within HMPREF1078_RS10150 at 655.498 kb on - strand, within HMPREF1078_RS10150 at 655.499 kb on + strand, within HMPREF1078_RS10150 at 655.572 kb on - strand, within HMPREF1078_RS10150 at 655.635 kb on + strand, within HMPREF1078_RS10150 at 655.841 kb on + strand, within HMPREF1078_RS10150 at 655.841 kb on + strand, within HMPREF1078_RS10150 at 655.841 kb on + strand, within HMPREF1078_RS10150 at 655.841 kb on + strand, within HMPREF1078_RS10150 at 655.842 kb on - strand, within HMPREF1078_RS10150 at 655.842 kb on - strand, within HMPREF1078_RS10150 at 655.938 kb on + strand, within HMPREF1078_RS10150 at 655.958 kb on - strand, within HMPREF1078_RS10150 at 655.960 kb on - strand, within HMPREF1078_RS10150 at 656.047 kb on - strand, within HMPREF1078_RS10150
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day4 remove 653,459 - HMPREF1078_RS10140 0.25 -0.9 653,469 - HMPREF1078_RS10140 0.26 -1.6 653,484 - HMPREF1078_RS10140 0.27 -0.5 653,522 - HMPREF1078_RS10140 0.30 +0.3 653,528 + HMPREF1078_RS10140 0.31 +0.0 653,552 - HMPREF1078_RS10140 0.32 +0.7 653,553 + HMPREF1078_RS10140 0.33 +2.8 653,553 + HMPREF1078_RS10140 0.33 +0.2 653,554 - HMPREF1078_RS10140 0.33 +0.5 653,579 - HMPREF1078_RS10140 0.34 +0.2 653,604 - HMPREF1078_RS10140 0.36 +1.2 653,609 + HMPREF1078_RS10140 0.37 +0.2 653,610 - HMPREF1078_RS10140 0.37 +0.3 653,645 + HMPREF1078_RS10140 0.39 -2.5 653,646 - HMPREF1078_RS10140 0.40 +0.4 653,646 - HMPREF1078_RS10140 0.40 +0.7 653,681 + HMPREF1078_RS10140 0.42 -1.8 653,770 + HMPREF1078_RS10140 0.49 -0.7 653,770 + HMPREF1078_RS10140 0.49 +1.2 653,770 + HMPREF1078_RS10140 0.49 +1.2 653,771 - HMPREF1078_RS10140 0.49 +1.2 653,854 + HMPREF1078_RS10140 0.55 -0.1 653,855 - HMPREF1078_RS10140 0.55 -0.6 653,855 - HMPREF1078_RS10140 0.55 -0.1 653,855 - HMPREF1078_RS10140 0.55 -1.1 653,860 + HMPREF1078_RS10140 0.56 +1.3 653,862 + HMPREF1078_RS10140 0.56 -2.1 653,863 - HMPREF1078_RS10140 0.56 -0.5 653,863 - HMPREF1078_RS10140 0.56 -0.1 653,919 - HMPREF1078_RS10140 0.60 +2.1 653,946 + HMPREF1078_RS10140 0.62 -2.4 654,042 - HMPREF1078_RS10140 0.69 +0.4 654,065 + HMPREF1078_RS10140 0.71 -2.7 654,090 + HMPREF1078_RS10140 0.73 +0.4 654,091 - HMPREF1078_RS10140 0.73 +0.6 654,098 - HMPREF1078_RS10140 0.74 -1.1 654,166 + HMPREF1078_RS10140 0.79 -0.4 654,166 + HMPREF1078_RS10140 0.79 -1.6 654,167 - HMPREF1078_RS10140 0.79 -1.1 654,182 + HMPREF1078_RS10140 0.80 -0.9 654,182 + HMPREF1078_RS10140 0.80 +0.2 654,183 - HMPREF1078_RS10140 0.80 -0.9 654,208 + HMPREF1078_RS10140 0.82 +0.1 654,273 + HMPREF1078_RS10140 0.87 -1.8 654,273 + HMPREF1078_RS10140 0.87 +1.4 654,274 - HMPREF1078_RS10140 0.87 -0.1 654,274 - HMPREF1078_RS10140 0.87 +2.2 654,274 - HMPREF1078_RS10140 0.87 +0.2 654,274 - HMPREF1078_RS10140 0.87 -2.0 654,274 - HMPREF1078_RS10140 0.87 -0.1 654,278 + HMPREF1078_RS10140 0.87 +0.2 654,278 + HMPREF1078_RS10140 0.87 -1.4 654,351 + +0.2 654,351 + +0.8 654,363 + +1.2 654,363 + -1.1 654,364 - +0.5 654,364 - -1.5 654,364 - +2.1 654,395 + +1.1 654,395 + +0.3 654,395 + +1.2 654,395 + +0.2 654,395 + -0.7 654,395 + +0.2 654,396 - +1.4 654,396 - -0.3 654,396 - +0.8 654,397 + -3.1 654,398 - -1.6 654,398 - -1.0 654,398 - +1.2 654,398 - -0.8 654,398 - -2.9 654,422 - -0.8 654,440 + -0.4 654,488 + +0.2 654,501 - -0.8 654,501 - -1.4 654,599 - HMPREF1078_RS10145 0.25 +1.2 654,703 - HMPREF1078_RS10145 0.41 -0.4 654,704 + HMPREF1078_RS10145 0.42 -0.4 654,704 + HMPREF1078_RS10145 0.42 -2.1 654,704 + HMPREF1078_RS10145 0.42 -0.8 654,704 + HMPREF1078_RS10145 0.42 -1.6 654,705 - HMPREF1078_RS10145 0.42 -1.6 654,705 - HMPREF1078_RS10145 0.42 +1.6 654,705 - HMPREF1078_RS10145 0.42 +0.2 654,705 - HMPREF1078_RS10145 0.42 +1.8 654,705 - HMPREF1078_RS10145 0.42 -2.3 654,776 - HMPREF1078_RS10145 0.53 -0.4 654,826 - HMPREF1078_RS10145 0.61 -1.4 654,826 - HMPREF1078_RS10145 0.61 +0.2 654,826 - HMPREF1078_RS10145 0.61 -1.4 654,828 - HMPREF1078_RS10145 0.61 +0.2 654,933 + HMPREF1078_RS10145 0.78 -1.4 654,934 - HMPREF1078_RS10145 0.78 -0.9 654,963 + HMPREF1078_RS10145 0.83 -0.4 654,963 + HMPREF1078_RS10145 0.83 -0.6 654,964 - HMPREF1078_RS10145 0.83 -0.1 654,964 - HMPREF1078_RS10145 0.83 -0.1 654,964 - HMPREF1078_RS10145 0.83 -0.4 654,968 - HMPREF1078_RS10145 0.83 -1.1 654,968 - HMPREF1078_RS10145 0.83 -1.3 654,968 - HMPREF1078_RS10145 0.83 +1.2 655,008 - HMPREF1078_RS10145 0.90 -0.6 655,021 + -1.0 655,021 + -1.1 655,066 - -0.8 655,066 - -0.8 655,066 - +1.2 655,066 - -1.1 655,074 + +0.2 655,075 - +1.4 655,079 - +1.2 655,087 - -2.1 655,104 - -0.6 655,110 - +2.2 655,110 - +0.4 655,210 - +0.2 655,215 + -0.8 655,216 - +0.2 655,216 - +0.2 655,216 - -1.4 655,287 - -1.6 655,359 + -0.0 655,359 + -0.8 655,360 - +0.4 655,360 - +0.9 655,361 + +1.2 655,488 + HMPREF1078_RS10150 0.18 -0.0 655,490 + HMPREF1078_RS10150 0.18 +0.4 655,490 + HMPREF1078_RS10150 0.18 -1.4 655,491 - HMPREF1078_RS10150 0.19 -0.2 655,491 - HMPREF1078_RS10150 0.19 +0.6 655,494 + HMPREF1078_RS10150 0.19 +1.2 655,494 + HMPREF1078_RS10150 0.19 -0.6 655,494 + HMPREF1078_RS10150 0.19 -1.6 655,495 - HMPREF1078_RS10150 0.19 +4.2 655,495 - HMPREF1078_RS10150 0.19 +0.2 655,495 - HMPREF1078_RS10150 0.19 -0.3 655,497 + HMPREF1078_RS10150 0.19 -0.9 655,497 + HMPREF1078_RS10150 0.19 +0.9 655,497 + HMPREF1078_RS10150 0.19 -2.8 655,497 + HMPREF1078_RS10150 0.19 +0.9 655,497 + HMPREF1078_RS10150 0.19 -0.4 655,498 - HMPREF1078_RS10150 0.19 +0.5 655,498 - HMPREF1078_RS10150 0.19 +0.1 655,498 - HMPREF1078_RS10150 0.19 +0.2 655,498 - HMPREF1078_RS10150 0.19 +1.2 655,498 - HMPREF1078_RS10150 0.19 -1.1 655,498 - HMPREF1078_RS10150 0.19 +0.2 655,498 - HMPREF1078_RS10150 0.19 -2.4 655,499 + HMPREF1078_RS10150 0.20 +0.9 655,572 - HMPREF1078_RS10150 0.29 -1.4 655,635 + HMPREF1078_RS10150 0.37 -0.8 655,841 + HMPREF1078_RS10150 0.62 -0.6 655,841 + HMPREF1078_RS10150 0.62 +2.0 655,841 + HMPREF1078_RS10150 0.62 -1.0 655,841 + HMPREF1078_RS10150 0.62 +1.2 655,842 - HMPREF1078_RS10150 0.62 -0.3 655,842 - HMPREF1078_RS10150 0.62 -1.8 655,938 + HMPREF1078_RS10150 0.74 -0.3 655,958 - HMPREF1078_RS10150 0.77 -0.6 655,960 - HMPREF1078_RS10150 0.77 -1.2 656,047 - HMPREF1078_RS10150 0.88 -1.6
Or see this region's nucleotide sequence