Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS10115 and HMPREF1078_RS10120 are separated by 99 nucleotides HMPREF1078_RS10120 and HMPREF1078_RS10125 are separated by 60 nucleotides
HMPREF1078_RS10115: HMPREF1078_RS10115 - hypothetical protein, at 647,893 to 648,798
_RS10115
HMPREF1078_RS10120: HMPREF1078_RS10120 - glutamine-hydrolyzing GMP synthase, at 648,898 to 650,418
_RS10120
HMPREF1078_RS10125: HMPREF1078_RS10125 - glutamine-hydrolyzing GMP synthase, at 650,479 to 651,786
_RS10125
Position (kb) 648
649
650
651 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 648.024 kb on - strand, within HMPREF1078_RS10115 at 648.159 kb on + strand, within HMPREF1078_RS10115 at 648.394 kb on - strand, within HMPREF1078_RS10115 at 648.422 kb on - strand, within HMPREF1078_RS10115 at 648.588 kb on + strand, within HMPREF1078_RS10115 at 648.653 kb on + strand, within HMPREF1078_RS10115 at 648.805 kb on - strand at 648.855 kb on + strand at 648.858 kb on + strand at 648.858 kb on + strand at 648.858 kb on + strand at 649.773 kb on + strand, within HMPREF1078_RS10120 at 649.773 kb on + strand, within HMPREF1078_RS10120 at 649.835 kb on + strand, within HMPREF1078_RS10120 at 649.917 kb on + strand, within HMPREF1078_RS10120 at 649.917 kb on + strand, within HMPREF1078_RS10120 at 649.922 kb on + strand, within HMPREF1078_RS10120 at 650.012 kb on + strand, within HMPREF1078_RS10120 at 650.016 kb on + strand, within HMPREF1078_RS10120 at 650.016 kb on + strand, within HMPREF1078_RS10120 at 650.067 kb on + strand, within HMPREF1078_RS10120 at 650.067 kb on + strand, within HMPREF1078_RS10120 at 650.067 kb on + strand, within HMPREF1078_RS10120 at 650.067 kb on + strand, within HMPREF1078_RS10120 at 650.073 kb on + strand, within HMPREF1078_RS10120 at 650.078 kb on + strand, within HMPREF1078_RS10120 at 650.127 kb on + strand, within HMPREF1078_RS10120 at 650.131 kb on + strand, within HMPREF1078_RS10120 at 650.131 kb on + strand, within HMPREF1078_RS10120 at 650.131 kb on + strand, within HMPREF1078_RS10120 at 650.131 kb on + strand, within HMPREF1078_RS10120 at 650.131 kb on + strand, within HMPREF1078_RS10120 at 650.131 kb on + strand, within HMPREF1078_RS10120 at 650.131 kb on + strand, within HMPREF1078_RS10120 at 650.210 kb on + strand, within HMPREF1078_RS10120 at 650.217 kb on + strand, within HMPREF1078_RS10120 at 650.217 kb on + strand, within HMPREF1078_RS10120 at 650.264 kb on + strand, within HMPREF1078_RS10120 at 650.441 kb on + strand at 650.441 kb on + strand at 650.443 kb on + strand at 650.443 kb on + strand at 650.444 kb on - strand at 650.444 kb on - strand at 650.444 kb on - strand at 650.444 kb on - strand at 650.444 kb on - strand at 650.444 kb on - strand at 650.444 kb on - strand at 650.444 kb on - strand at 650.447 kb on + strand at 650.447 kb on + strand at 650.448 kb on - strand at 650.448 kb on - strand at 650.469 kb on - strand at 650.489 kb on + strand at 650.490 kb on + strand at 650.490 kb on + strand at 650.490 kb on + strand at 650.490 kb on + strand at 650.490 kb on + strand at 650.491 kb on - strand at 650.491 kb on - strand at 650.564 kb on - strand at 650.565 kb on + strand at 650.621 kb on + strand, within HMPREF1078_RS10125 at 650.622 kb on - strand, within HMPREF1078_RS10125 at 650.622 kb on - strand, within HMPREF1078_RS10125 at 650.649 kb on + strand, within HMPREF1078_RS10125 at 650.650 kb on - strand, within HMPREF1078_RS10125 at 650.650 kb on - strand, within HMPREF1078_RS10125 at 650.657 kb on + strand, within HMPREF1078_RS10125 at 650.657 kb on + strand, within HMPREF1078_RS10125 at 650.657 kb on + strand, within HMPREF1078_RS10125 at 650.658 kb on - strand, within HMPREF1078_RS10125 at 650.750 kb on + strand, within HMPREF1078_RS10125 at 650.756 kb on + strand, within HMPREF1078_RS10125 at 650.906 kb on + strand, within HMPREF1078_RS10125 at 650.968 kb on - strand, within HMPREF1078_RS10125 at 651.008 kb on + strand, within HMPREF1078_RS10125 at 651.077 kb on - strand, within HMPREF1078_RS10125 at 651.079 kb on - strand, within HMPREF1078_RS10125 at 651.102 kb on - strand, within HMPREF1078_RS10125 at 651.106 kb on - strand, within HMPREF1078_RS10125 at 651.162 kb on + strand, within HMPREF1078_RS10125 at 651.222 kb on + strand, within HMPREF1078_RS10125 at 651.222 kb on + strand, within HMPREF1078_RS10125 at 651.222 kb on + strand, within HMPREF1078_RS10125 at 651.223 kb on - strand, within HMPREF1078_RS10125 at 651.223 kb on - strand, within HMPREF1078_RS10125 at 651.225 kb on + strand, within HMPREF1078_RS10125 at 651.225 kb on + strand, within HMPREF1078_RS10125 at 651.225 kb on + strand, within HMPREF1078_RS10125 at 651.226 kb on - strand, within HMPREF1078_RS10125 at 651.226 kb on - strand, within HMPREF1078_RS10125 at 651.226 kb on - strand, within HMPREF1078_RS10125 at 651.226 kb on - strand, within HMPREF1078_RS10125 at 651.226 kb on - strand, within HMPREF1078_RS10125 at 651.229 kb on + strand, within HMPREF1078_RS10125 at 651.229 kb on + strand, within HMPREF1078_RS10125 at 651.290 kb on + strand, within HMPREF1078_RS10125 at 651.290 kb on + strand, within HMPREF1078_RS10125 at 651.290 kb on + strand, within HMPREF1078_RS10125 at 651.291 kb on - strand, within HMPREF1078_RS10125
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day4 remove 648,024 - HMPREF1078_RS10115 0.14 +1.2 648,159 + HMPREF1078_RS10115 0.29 +0.6 648,394 - HMPREF1078_RS10115 0.55 +0.2 648,422 - HMPREF1078_RS10115 0.58 -0.4 648,588 + HMPREF1078_RS10115 0.77 -0.4 648,653 + HMPREF1078_RS10115 0.84 +1.2 648,805 - -0.8 648,855 + +1.8 648,858 + +0.2 648,858 + -2.1 648,858 + -0.6 649,773 + HMPREF1078_RS10120 0.58 +0.2 649,773 + HMPREF1078_RS10120 0.58 +1.2 649,835 + HMPREF1078_RS10120 0.62 +1.2 649,917 + HMPREF1078_RS10120 0.67 -2.5 649,917 + HMPREF1078_RS10120 0.67 -1.6 649,922 + HMPREF1078_RS10120 0.67 -2.8 650,012 + HMPREF1078_RS10120 0.73 -2.4 650,016 + HMPREF1078_RS10120 0.74 -1.1 650,016 + HMPREF1078_RS10120 0.74 +1.2 650,067 + HMPREF1078_RS10120 0.77 -2.8 650,067 + HMPREF1078_RS10120 0.77 -2.9 650,067 + HMPREF1078_RS10120 0.77 -2.7 650,067 + HMPREF1078_RS10120 0.77 -1.1 650,073 + HMPREF1078_RS10120 0.77 -2.0 650,078 + HMPREF1078_RS10120 0.78 -1.6 650,127 + HMPREF1078_RS10120 0.81 -1.8 650,131 + HMPREF1078_RS10120 0.81 -1.6 650,131 + HMPREF1078_RS10120 0.81 -4.6 650,131 + HMPREF1078_RS10120 0.81 -0.4 650,131 + HMPREF1078_RS10120 0.81 -0.8 650,131 + HMPREF1078_RS10120 0.81 -2.5 650,131 + HMPREF1078_RS10120 0.81 -2.4 650,131 + HMPREF1078_RS10120 0.81 -2.0 650,210 + HMPREF1078_RS10120 0.86 -0.1 650,217 + HMPREF1078_RS10120 0.87 -2.6 650,217 + HMPREF1078_RS10120 0.87 -2.2 650,264 + HMPREF1078_RS10120 0.90 +1.2 650,441 + -0.8 650,441 + +0.1 650,443 + -2.4 650,443 + +0.2 650,444 - -0.6 650,444 - -1.4 650,444 - -0.7 650,444 - -0.6 650,444 - -1.3 650,444 - +0.0 650,444 - +0.6 650,444 - -1.1 650,447 + -1.6 650,447 + +0.8 650,448 - -1.6 650,448 - +0.2 650,469 - -1.1 650,489 + -1.0 650,490 + -0.1 650,490 + +0.2 650,490 + -0.8 650,490 + -1.6 650,490 + -4.0 650,491 - -1.6 650,491 - -1.8 650,564 - -1.1 650,565 + +0.2 650,621 + HMPREF1078_RS10125 0.11 -0.8 650,622 - HMPREF1078_RS10125 0.11 -0.6 650,622 - HMPREF1078_RS10125 0.11 -0.9 650,649 + HMPREF1078_RS10125 0.13 -1.1 650,650 - HMPREF1078_RS10125 0.13 -2.9 650,650 - HMPREF1078_RS10125 0.13 +0.4 650,657 + HMPREF1078_RS10125 0.14 -1.3 650,657 + HMPREF1078_RS10125 0.14 -1.3 650,657 + HMPREF1078_RS10125 0.14 -1.3 650,658 - HMPREF1078_RS10125 0.14 +0.2 650,750 + HMPREF1078_RS10125 0.21 -1.0 650,756 + HMPREF1078_RS10125 0.21 -0.4 650,906 + HMPREF1078_RS10125 0.33 +1.6 650,968 - HMPREF1078_RS10125 0.37 -0.8 651,008 + HMPREF1078_RS10125 0.40 -1.1 651,077 - HMPREF1078_RS10125 0.46 +0.3 651,079 - HMPREF1078_RS10125 0.46 -2.5 651,102 - HMPREF1078_RS10125 0.48 -2.0 651,106 - HMPREF1078_RS10125 0.48 -0.2 651,162 + HMPREF1078_RS10125 0.52 +0.5 651,222 + HMPREF1078_RS10125 0.57 -2.3 651,222 + HMPREF1078_RS10125 0.57 +0.7 651,222 + HMPREF1078_RS10125 0.57 +0.6 651,223 - HMPREF1078_RS10125 0.57 -0.0 651,223 - HMPREF1078_RS10125 0.57 -1.6 651,225 + HMPREF1078_RS10125 0.57 -0.1 651,225 + HMPREF1078_RS10125 0.57 +0.9 651,225 + HMPREF1078_RS10125 0.57 +1.2 651,226 - HMPREF1078_RS10125 0.57 +0.4 651,226 - HMPREF1078_RS10125 0.57 -0.1 651,226 - HMPREF1078_RS10125 0.57 -0.0 651,226 - HMPREF1078_RS10125 0.57 -1.8 651,226 - HMPREF1078_RS10125 0.57 +1.6 651,229 + HMPREF1078_RS10125 0.57 +0.8 651,229 + HMPREF1078_RS10125 0.57 -0.3 651,290 + HMPREF1078_RS10125 0.62 -1.4 651,290 + HMPREF1078_RS10125 0.62 -3.9 651,290 + HMPREF1078_RS10125 0.62 +3.3 651,291 - HMPREF1078_RS10125 0.62 -2.1
Or see this region's nucleotide sequence