Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS09620 and HMPREF1078_RS09625 are separated by 322 nucleotides HMPREF1078_RS09625 and HMPREF1078_RS09630 are separated by 9 nucleotides HMPREF1078_RS09630 and HMPREF1078_RS09635 are separated by 50 nucleotides HMPREF1078_RS09635 and HMPREF1078_RS09640 are separated by 99 nucleotides
HMPREF1078_RS09620: HMPREF1078_RS09620 - amino acid permease, at 526,749 to 528,404
_RS09620
HMPREF1078_RS09625: HMPREF1078_RS09625 - tRNA-Leu, at 528,727 to 528,810
_RS09625
HMPREF1078_RS09630: HMPREF1078_RS09630 - tRNA-Leu, at 528,820 to 528,901
_RS09630
HMPREF1078_RS09635: HMPREF1078_RS09635 - tRNA-Gly, at 528,952 to 529,027
_RS09635
HMPREF1078_RS09640: HMPREF1078_RS09640 - SGNH/GDSL hydrolase family protein, at 529,127 to 529,897
_RS09640
Position (kb) 528
529 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 527.780 kb on - strand, within HMPREF1078_RS09620 at 527.821 kb on + strand, within HMPREF1078_RS09620 at 527.822 kb on - strand, within HMPREF1078_RS09620 at 527.822 kb on - strand, within HMPREF1078_RS09620 at 527.824 kb on + strand, within HMPREF1078_RS09620 at 527.825 kb on - strand, within HMPREF1078_RS09620 at 527.843 kb on + strand, within HMPREF1078_RS09620 at 528.133 kb on + strand, within HMPREF1078_RS09620 at 528.155 kb on + strand, within HMPREF1078_RS09620 at 528.155 kb on + strand, within HMPREF1078_RS09620 at 528.156 kb on - strand, within HMPREF1078_RS09620 at 528.159 kb on + strand, within HMPREF1078_RS09620 at 528.159 kb on + strand, within HMPREF1078_RS09620 at 528.159 kb on + strand, within HMPREF1078_RS09620 at 528.160 kb on - strand, within HMPREF1078_RS09620 at 528.182 kb on + strand, within HMPREF1078_RS09620 at 528.182 kb on + strand, within HMPREF1078_RS09620 at 528.183 kb on - strand, within HMPREF1078_RS09620 at 528.233 kb on + strand, within HMPREF1078_RS09620 at 528.233 kb on + strand, within HMPREF1078_RS09620 at 528.233 kb on + strand, within HMPREF1078_RS09620 at 528.233 kb on + strand, within HMPREF1078_RS09620 at 528.234 kb on - strand, within HMPREF1078_RS09620 at 528.234 kb on - strand, within HMPREF1078_RS09620 at 528.234 kb on - strand, within HMPREF1078_RS09620 at 528.312 kb on - strand at 528.363 kb on + strand at 528.363 kb on + strand at 528.363 kb on + strand at 528.364 kb on + strand at 528.364 kb on - strand at 528.364 kb on - strand at 528.403 kb on - strand at 528.416 kb on - strand at 528.440 kb on + strand at 528.441 kb on - strand at 528.441 kb on - strand at 528.441 kb on - strand at 528.445 kb on + strand at 528.446 kb on - strand at 528.461 kb on - strand at 528.494 kb on + strand at 528.494 kb on + strand at 528.500 kb on - strand at 528.512 kb on + strand at 528.518 kb on + strand at 528.529 kb on + strand at 528.529 kb on + strand at 528.530 kb on - strand at 528.532 kb on + strand at 528.533 kb on - strand at 528.533 kb on - strand at 528.538 kb on - strand at 528.538 kb on - strand at 528.556 kb on - strand at 528.570 kb on + strand at 528.570 kb on + strand at 528.570 kb on + strand at 528.571 kb on - strand at 528.571 kb on - strand at 528.573 kb on - strand at 528.582 kb on + strand at 528.583 kb on - strand at 528.583 kb on - strand at 528.685 kb on + strand at 528.685 kb on + strand at 528.686 kb on - strand at 528.687 kb on + strand at 528.688 kb on - strand at 528.704 kb on + strand at 528.704 kb on + strand at 528.705 kb on - strand at 528.708 kb on + strand at 528.708 kb on + strand at 528.708 kb on + strand at 528.708 kb on + strand at 528.708 kb on + strand at 528.708 kb on + strand at 528.708 kb on + strand at 528.708 kb on + strand at 528.708 kb on + strand at 528.708 kb on + strand at 528.708 kb on + strand at 528.708 kb on + strand at 528.708 kb on + strand at 528.709 kb on - strand at 528.709 kb on - strand at 528.709 kb on - strand at 528.709 kb on - strand at 528.709 kb on - strand at 528.709 kb on - strand at 528.709 kb on - strand at 528.709 kb on - strand at 528.709 kb on - strand at 528.710 kb on + strand at 528.711 kb on - strand at 528.711 kb on - strand at 528.717 kb on + strand at 528.718 kb on - strand at 528.718 kb on - strand at 528.723 kb on + strand at 528.723 kb on + strand at 528.723 kb on + strand at 528.723 kb on + strand at 528.723 kb on + strand at 528.723 kb on + strand at 528.723 kb on + strand at 528.724 kb on - strand at 528.724 kb on - strand at 528.724 kb on - strand at 528.724 kb on - strand at 528.728 kb on - strand at 528.768 kb on + strand, within HMPREF1078_RS09625 at 528.790 kb on + strand, within HMPREF1078_RS09625 at 528.912 kb on + strand at 528.912 kb on + strand at 528.912 kb on + strand at 528.913 kb on - strand at 528.913 kb on - strand at 528.934 kb on - strand at 528.986 kb on - strand, within HMPREF1078_RS09635 at 529.000 kb on + strand, within HMPREF1078_RS09635 at 529.000 kb on + strand, within HMPREF1078_RS09635 at 529.007 kb on + strand, within HMPREF1078_RS09635 at 529.045 kb on + strand at 529.092 kb on + strand at 529.123 kb on + strand at 529.128 kb on + strand at 529.268 kb on + strand, within HMPREF1078_RS09640 at 529.273 kb on + strand, within HMPREF1078_RS09640 at 529.273 kb on + strand, within HMPREF1078_RS09640 at 529.346 kb on + strand, within HMPREF1078_RS09640 at 529.349 kb on - strand, within HMPREF1078_RS09640 at 529.388 kb on + strand, within HMPREF1078_RS09640 at 529.389 kb on - strand, within HMPREF1078_RS09640 at 529.389 kb on - strand, within HMPREF1078_RS09640 at 529.418 kb on - strand, within HMPREF1078_RS09640 at 529.449 kb on + strand, within HMPREF1078_RS09640 at 529.469 kb on - strand, within HMPREF1078_RS09640 at 529.471 kb on - strand, within HMPREF1078_RS09640 at 529.471 kb on - strand, within HMPREF1078_RS09640 at 529.487 kb on - strand, within HMPREF1078_RS09640 at 529.665 kb on + strand, within HMPREF1078_RS09640 at 529.666 kb on - strand, within HMPREF1078_RS09640 at 529.705 kb on + strand, within HMPREF1078_RS09640 at 529.790 kb on + strand, within HMPREF1078_RS09640 at 529.790 kb on + strand, within HMPREF1078_RS09640 at 529.791 kb on - strand, within HMPREF1078_RS09640 at 529.791 kb on - strand, within HMPREF1078_RS09640 at 529.791 kb on - strand, within HMPREF1078_RS09640
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day4 remove 527,780 - HMPREF1078_RS09620 0.62 +0.3 527,821 + HMPREF1078_RS09620 0.65 -1.6 527,822 - HMPREF1078_RS09620 0.65 -0.9 527,822 - HMPREF1078_RS09620 0.65 +1.8 527,824 + HMPREF1078_RS09620 0.65 +0.2 527,825 - HMPREF1078_RS09620 0.65 -0.8 527,843 + HMPREF1078_RS09620 0.66 +1.1 528,133 + HMPREF1078_RS09620 0.84 +1.2 528,155 + HMPREF1078_RS09620 0.85 -0.8 528,155 + HMPREF1078_RS09620 0.85 +1.4 528,156 - HMPREF1078_RS09620 0.85 +2.4 528,159 + HMPREF1078_RS09620 0.85 +1.0 528,159 + HMPREF1078_RS09620 0.85 +0.7 528,159 + HMPREF1078_RS09620 0.85 -0.6 528,160 - HMPREF1078_RS09620 0.85 -0.5 528,182 + HMPREF1078_RS09620 0.87 +1.1 528,182 + HMPREF1078_RS09620 0.87 +0.2 528,183 - HMPREF1078_RS09620 0.87 -0.5 528,233 + HMPREF1078_RS09620 0.90 +0.8 528,233 + HMPREF1078_RS09620 0.90 +0.6 528,233 + HMPREF1078_RS09620 0.90 +1.2 528,233 + HMPREF1078_RS09620 0.90 -1.8 528,234 - HMPREF1078_RS09620 0.90 +1.3 528,234 - HMPREF1078_RS09620 0.90 +2.6 528,234 - HMPREF1078_RS09620 0.90 +1.2 528,312 - +0.8 528,363 + -2.5 528,363 + -0.9 528,363 + -0.8 528,364 + -0.1 528,364 - -3.6 528,364 - +1.2 528,403 - -0.4 528,416 - -0.4 528,440 + -0.3 528,441 - +0.5 528,441 - -0.2 528,441 - +0.1 528,445 + -1.7 528,446 - +0.2 528,461 - -0.8 528,494 + +0.6 528,494 + -1.6 528,500 - -1.6 528,512 + -1.1 528,518 + -1.4 528,529 + -1.4 528,529 + -0.6 528,530 - -0.2 528,532 + -0.8 528,533 - -0.8 528,533 - -0.6 528,538 - +0.3 528,538 - -0.5 528,556 - -0.4 528,570 + -1.6 528,570 + -1.6 528,570 + -2.1 528,571 - -0.6 528,571 - +0.6 528,573 - -2.1 528,582 + +0.9 528,583 - -1.0 528,583 - -1.3 528,685 + +0.5 528,685 + -2.9 528,686 - -2.0 528,687 + -1.1 528,688 - +0.3 528,704 + -0.0 528,704 + -1.3 528,705 - -0.8 528,708 + +2.2 528,708 + +1.9 528,708 + -0.8 528,708 + -0.5 528,708 + -0.6 528,708 + +0.2 528,708 + -2.4 528,708 + -0.4 528,708 + -0.7 528,708 + +2.2 528,708 + +0.3 528,708 + -0.4 528,708 + -0.8 528,709 - -0.1 528,709 - -0.2 528,709 - -1.1 528,709 - -1.3 528,709 - +0.0 528,709 - +0.4 528,709 - +1.2 528,709 - +0.7 528,709 - -1.8 528,710 + -1.1 528,711 - +0.2 528,711 - +1.0 528,717 + -0.0 528,718 - +2.8 528,718 - +1.3 528,723 + +2.1 528,723 + -2.3 528,723 + -1.1 528,723 + +0.2 528,723 + +1.2 528,723 + +1.3 528,723 + -2.3 528,724 - -1.5 528,724 - +0.2 528,724 - +1.0 528,724 - -0.4 528,728 - -2.0 528,768 + HMPREF1078_RS09625 0.49 -2.9 528,790 + HMPREF1078_RS09625 0.75 -1.0 528,912 + -0.0 528,912 + -2.3 528,912 + +0.2 528,913 - -0.3 528,913 - -2.7 528,934 - -2.0 528,986 - HMPREF1078_RS09635 0.45 -1.1 529,000 + HMPREF1078_RS09635 0.63 +0.8 529,000 + HMPREF1078_RS09635 0.63 -0.4 529,007 + HMPREF1078_RS09635 0.72 -0.8 529,045 + -0.9 529,092 + +2.8 529,123 + +0.1 529,128 + +0.0 529,268 + HMPREF1078_RS09640 0.18 +1.5 529,273 + HMPREF1078_RS09640 0.19 +1.8 529,273 + HMPREF1078_RS09640 0.19 -0.4 529,346 + HMPREF1078_RS09640 0.28 -1.4 529,349 - HMPREF1078_RS09640 0.29 +1.2 529,388 + HMPREF1078_RS09640 0.34 +1.1 529,389 - HMPREF1078_RS09640 0.34 -1.4 529,389 - HMPREF1078_RS09640 0.34 +0.7 529,418 - HMPREF1078_RS09640 0.38 +0.3 529,449 + HMPREF1078_RS09640 0.42 +2.6 529,469 - HMPREF1078_RS09640 0.44 +1.2 529,471 - HMPREF1078_RS09640 0.45 +0.6 529,471 - HMPREF1078_RS09640 0.45 +0.1 529,487 - HMPREF1078_RS09640 0.47 +0.3 529,665 + HMPREF1078_RS09640 0.70 +0.9 529,666 - HMPREF1078_RS09640 0.70 -4.6 529,705 + HMPREF1078_RS09640 0.75 +0.2 529,790 + HMPREF1078_RS09640 0.86 -0.6 529,790 + HMPREF1078_RS09640 0.86 -0.0 529,791 - HMPREF1078_RS09640 0.86 -3.0 529,791 - HMPREF1078_RS09640 0.86 -1.6 529,791 - HMPREF1078_RS09640 0.86 +0.2
Or see this region's nucleotide sequence