Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS08700 and HMPREF1078_RS08705 are separated by 189 nucleotides HMPREF1078_RS08705 and HMPREF1078_RS08710 are separated by 39 nucleotides
HMPREF1078_RS08700: HMPREF1078_RS08700 - alpha-L-arabinofuranosidase C-terminal domain-containing protein, at 324,185 to 326,140
_RS08700
HMPREF1078_RS08705: HMPREF1078_RS08705 - aldose epimerase family protein, at 326,330 to 327,409
_RS08705
HMPREF1078_RS08710: HMPREF1078_RS08710 - MFS transporter, at 327,449 to 328,705
_RS08710
Position (kb) 326
327
328 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 325.624 kb on - strand, within HMPREF1078_RS08700 at 325.699 kb on + strand, within HMPREF1078_RS08700 at 325.742 kb on + strand, within HMPREF1078_RS08700 at 325.742 kb on - strand, within HMPREF1078_RS08700 at 325.743 kb on - strand, within HMPREF1078_RS08700 at 325.856 kb on - strand, within HMPREF1078_RS08700 at 326.140 kb on + strand at 326.144 kb on + strand at 326.145 kb on - strand at 326.217 kb on + strand at 326.217 kb on + strand at 326.218 kb on - strand at 326.256 kb on + strand at 326.303 kb on + strand at 326.840 kb on + strand, within HMPREF1078_RS08705 at 326.840 kb on + strand, within HMPREF1078_RS08705 at 326.925 kb on + strand, within HMPREF1078_RS08705 at 326.960 kb on + strand, within HMPREF1078_RS08705 at 326.985 kb on + strand, within HMPREF1078_RS08705 at 326.990 kb on + strand, within HMPREF1078_RS08705 at 327.034 kb on + strand, within HMPREF1078_RS08705 at 327.106 kb on + strand, within HMPREF1078_RS08705 at 327.106 kb on + strand, within HMPREF1078_RS08705 at 327.106 kb on + strand, within HMPREF1078_RS08705 at 327.106 kb on + strand, within HMPREF1078_RS08705 at 327.106 kb on + strand, within HMPREF1078_RS08705 at 327.106 kb on + strand, within HMPREF1078_RS08705 at 327.110 kb on + strand, within HMPREF1078_RS08705 at 327.110 kb on + strand, within HMPREF1078_RS08705 at 327.110 kb on + strand, within HMPREF1078_RS08705 at 327.110 kb on + strand, within HMPREF1078_RS08705 at 327.110 kb on + strand, within HMPREF1078_RS08705 at 327.110 kb on + strand, within HMPREF1078_RS08705 at 327.110 kb on + strand, within HMPREF1078_RS08705 at 327.110 kb on + strand, within HMPREF1078_RS08705 at 327.110 kb on + strand, within HMPREF1078_RS08705 at 327.112 kb on + strand, within HMPREF1078_RS08705 at 327.112 kb on + strand, within HMPREF1078_RS08705 at 327.112 kb on + strand, within HMPREF1078_RS08705 at 327.112 kb on + strand, within HMPREF1078_RS08705 at 327.112 kb on + strand, within HMPREF1078_RS08705 at 327.112 kb on + strand, within HMPREF1078_RS08705 at 327.112 kb on + strand, within HMPREF1078_RS08705 at 327.112 kb on + strand, within HMPREF1078_RS08705 at 327.112 kb on + strand, within HMPREF1078_RS08705 at 327.112 kb on + strand, within HMPREF1078_RS08705 at 327.112 kb on + strand, within HMPREF1078_RS08705 at 327.114 kb on + strand, within HMPREF1078_RS08705 at 327.114 kb on + strand, within HMPREF1078_RS08705 at 327.117 kb on + strand, within HMPREF1078_RS08705 at 327.219 kb on + strand, within HMPREF1078_RS08705 at 327.221 kb on + strand, within HMPREF1078_RS08705 at 327.407 kb on + strand at 327.414 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day4 remove 325,624 - HMPREF1078_RS08700 0.74 -1.0 325,699 + HMPREF1078_RS08700 0.77 -0.8 325,742 + HMPREF1078_RS08700 0.80 -0.5 325,742 - HMPREF1078_RS08700 0.80 +0.2 325,743 - HMPREF1078_RS08700 0.80 +0.8 325,856 - HMPREF1078_RS08700 0.85 +0.2 326,140 + -0.1 326,144 + +1.6 326,145 - +1.5 326,217 + -3.1 326,217 + +0.0 326,218 - -0.9 326,256 + +0.6 326,303 + -0.4 326,840 + HMPREF1078_RS08705 0.47 -1.6 326,840 + HMPREF1078_RS08705 0.47 +1.2 326,925 + HMPREF1078_RS08705 0.55 -2.1 326,960 + HMPREF1078_RS08705 0.58 +1.2 326,985 + HMPREF1078_RS08705 0.61 -2.7 326,990 + HMPREF1078_RS08705 0.61 -0.8 327,034 + HMPREF1078_RS08705 0.65 -2.5 327,106 + HMPREF1078_RS08705 0.72 -0.4 327,106 + HMPREF1078_RS08705 0.72 -1.4 327,106 + HMPREF1078_RS08705 0.72 -3.6 327,106 + HMPREF1078_RS08705 0.72 -2.2 327,106 + HMPREF1078_RS08705 0.72 +0.2 327,106 + HMPREF1078_RS08705 0.72 -1.4 327,110 + HMPREF1078_RS08705 0.72 -2.1 327,110 + HMPREF1078_RS08705 0.72 -2.5 327,110 + HMPREF1078_RS08705 0.72 -4.6 327,110 + HMPREF1078_RS08705 0.72 -0.8 327,110 + HMPREF1078_RS08705 0.72 -2.0 327,110 + HMPREF1078_RS08705 0.72 -0.4 327,110 + HMPREF1078_RS08705 0.72 -3.2 327,110 + HMPREF1078_RS08705 0.72 -2.4 327,110 + HMPREF1078_RS08705 0.72 -1.5 327,112 + HMPREF1078_RS08705 0.72 -1.1 327,112 + HMPREF1078_RS08705 0.72 -2.7 327,112 + HMPREF1078_RS08705 0.72 -2.2 327,112 + HMPREF1078_RS08705 0.72 -1.5 327,112 + HMPREF1078_RS08705 0.72 -1.5 327,112 + HMPREF1078_RS08705 0.72 -1.9 327,112 + HMPREF1078_RS08705 0.72 +1.2 327,112 + HMPREF1078_RS08705 0.72 -1.9 327,112 + HMPREF1078_RS08705 0.72 -0.8 327,112 + HMPREF1078_RS08705 0.72 +0.2 327,112 + HMPREF1078_RS08705 0.72 -3.8 327,114 + HMPREF1078_RS08705 0.73 -1.4 327,114 + HMPREF1078_RS08705 0.73 -1.7 327,117 + HMPREF1078_RS08705 0.73 -1.7 327,219 + HMPREF1078_RS08705 0.82 +0.0 327,221 + HMPREF1078_RS08705 0.82 -3.3 327,407 + -1.1 327,414 + +0.6
Or see this region's nucleotide sequence