Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS08505

Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1078_RS08500 and HMPREF1078_RS08505 are separated by 148 nucleotidesHMPREF1078_RS08505 and HMPREF1078_RS08510 are separated by 0 nucleotides HMPREF1078_RS08500: HMPREF1078_RS08500 - DUF4435 domain-containing protein, at 276,525 to 278,084 _RS08500 HMPREF1078_RS08505: HMPREF1078_RS08505 - glycosyltransferase family 39 protein, at 278,233 to 279,951 _RS08505 HMPREF1078_RS08510: HMPREF1078_RS08510 - Gfo/Idh/MocA family oxidoreductase, at 279,952 to 281,292 _RS08510 Position (kb) 278 279 280Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 277.243 kb on + strand, within HMPREF1078_RS08500at 277.243 kb on + strand, within HMPREF1078_RS08500at 277.251 kb on + strand, within HMPREF1078_RS08500at 277.252 kb on - strand, within HMPREF1078_RS08500at 277.320 kb on + strand, within HMPREF1078_RS08500at 277.321 kb on - strand, within HMPREF1078_RS08500at 277.333 kb on + strand, within HMPREF1078_RS08500at 277.333 kb on + strand, within HMPREF1078_RS08500at 277.453 kb on + strand, within HMPREF1078_RS08500at 277.497 kb on - strand, within HMPREF1078_RS08500at 277.549 kb on + strand, within HMPREF1078_RS08500at 277.549 kb on + strand, within HMPREF1078_RS08500at 277.549 kb on + strand, within HMPREF1078_RS08500at 277.549 kb on + strand, within HMPREF1078_RS08500at 277.550 kb on - strand, within HMPREF1078_RS08500at 277.550 kb on - strand, within HMPREF1078_RS08500at 277.555 kb on - strand, within HMPREF1078_RS08500at 277.555 kb on - strand, within HMPREF1078_RS08500at 277.571 kb on + strand, within HMPREF1078_RS08500at 277.571 kb on + strand, within HMPREF1078_RS08500at 277.572 kb on - strand, within HMPREF1078_RS08500at 277.572 kb on - strand, within HMPREF1078_RS08500at 277.572 kb on - strand, within HMPREF1078_RS08500at 277.575 kb on + strand, within HMPREF1078_RS08500at 277.575 kb on + strand, within HMPREF1078_RS08500at 277.575 kb on + strand, within HMPREF1078_RS08500at 277.576 kb on - strand, within HMPREF1078_RS08500at 277.576 kb on - strand, within HMPREF1078_RS08500at 277.576 kb on - strand, within HMPREF1078_RS08500at 277.576 kb on - strand, within HMPREF1078_RS08500at 277.840 kb on + strand, within HMPREF1078_RS08500at 277.855 kb on + strand, within HMPREF1078_RS08500at 277.968 kb on + strandat 277.969 kb on - strandat 277.969 kb on - strandat 277.977 kb on - strandat 278.134 kb on - strandat 278.147 kb on - strandat 278.149 kb on - strandat 278.184 kb on + strandat 278.196 kb on + strandat 278.196 kb on + strandat 278.197 kb on - strandat 278.212 kb on + strandat 278.238 kb on + strandat 278.295 kb on + strandat 278.368 kb on + strandat 278.440 kb on + strand, within HMPREF1078_RS08505at 278.441 kb on - strand, within HMPREF1078_RS08505at 278.484 kb on + strand, within HMPREF1078_RS08505at 278.485 kb on - strand, within HMPREF1078_RS08505at 278.596 kb on - strand, within HMPREF1078_RS08505at 278.631 kb on + strand, within HMPREF1078_RS08505at 278.655 kb on - strand, within HMPREF1078_RS08505at 278.657 kb on - strand, within HMPREF1078_RS08505at 278.712 kb on - strand, within HMPREF1078_RS08505at 278.745 kb on - strand, within HMPREF1078_RS08505at 278.748 kb on + strand, within HMPREF1078_RS08505at 278.749 kb on - strand, within HMPREF1078_RS08505at 278.749 kb on - strand, within HMPREF1078_RS08505at 278.749 kb on - strand, within HMPREF1078_RS08505at 278.762 kb on + strand, within HMPREF1078_RS08505at 278.763 kb on - strand, within HMPREF1078_RS08505at 278.779 kb on + strand, within HMPREF1078_RS08505at 278.779 kb on + strand, within HMPREF1078_RS08505at 278.796 kb on + strand, within HMPREF1078_RS08505at 278.797 kb on - strand, within HMPREF1078_RS08505at 278.800 kb on + strand, within HMPREF1078_RS08505at 278.806 kb on + strand, within HMPREF1078_RS08505at 278.807 kb on - strand, within HMPREF1078_RS08505at 278.833 kb on + strand, within HMPREF1078_RS08505at 278.872 kb on + strand, within HMPREF1078_RS08505at 278.873 kb on - strand, within HMPREF1078_RS08505at 278.915 kb on + strand, within HMPREF1078_RS08505at 278.921 kb on + strand, within HMPREF1078_RS08505at 278.922 kb on - strand, within HMPREF1078_RS08505at 279.108 kb on - strand, within HMPREF1078_RS08505at 279.164 kb on + strand, within HMPREF1078_RS08505at 279.165 kb on - strand, within HMPREF1078_RS08505at 279.200 kb on + strand, within HMPREF1078_RS08505at 279.221 kb on + strand, within HMPREF1078_RS08505at 279.221 kb on + strand, within HMPREF1078_RS08505at 279.221 kb on + strand, within HMPREF1078_RS08505at 279.223 kb on + strand, within HMPREF1078_RS08505at 279.223 kb on + strand, within HMPREF1078_RS08505at 279.224 kb on - strand, within HMPREF1078_RS08505at 279.246 kb on + strand, within HMPREF1078_RS08505at 279.269 kb on - strand, within HMPREF1078_RS08505at 279.270 kb on + strand, within HMPREF1078_RS08505at 279.276 kb on - strand, within HMPREF1078_RS08505at 279.277 kb on + strand, within HMPREF1078_RS08505at 279.277 kb on + strand, within HMPREF1078_RS08505at 279.277 kb on + strand, within HMPREF1078_RS08505at 279.277 kb on + strand, within HMPREF1078_RS08505at 279.278 kb on - strand, within HMPREF1078_RS08505at 279.278 kb on - strand, within HMPREF1078_RS08505at 279.278 kb on - strand, within HMPREF1078_RS08505at 279.278 kb on - strand, within HMPREF1078_RS08505at 279.312 kb on - strand, within HMPREF1078_RS08505at 279.453 kb on + strand, within HMPREF1078_RS08505at 279.498 kb on - strand, within HMPREF1078_RS08505at 279.512 kb on - strand, within HMPREF1078_RS08505at 279.526 kb on + strand, within HMPREF1078_RS08505at 279.527 kb on - strand, within HMPREF1078_RS08505at 279.600 kb on - strand, within HMPREF1078_RS08505at 279.630 kb on - strand, within HMPREF1078_RS08505at 279.630 kb on - strand, within HMPREF1078_RS08505at 279.699 kb on + strand, within HMPREF1078_RS08505at 279.699 kb on + strand, within HMPREF1078_RS08505at 279.699 kb on + strand, within HMPREF1078_RS08505at 279.699 kb on + strand, within HMPREF1078_RS08505at 279.700 kb on - strand, within HMPREF1078_RS08505at 279.700 kb on - strand, within HMPREF1078_RS08505at 279.700 kb on - strand, within HMPREF1078_RS08505at 279.700 kb on - strand, within HMPREF1078_RS08505at 279.700 kb on - strand, within HMPREF1078_RS08505at 279.700 kb on - strand, within HMPREF1078_RS08505at 279.703 kb on + strand, within HMPREF1078_RS08505at 279.703 kb on + strand, within HMPREF1078_RS08505at 279.703 kb on + strand, within HMPREF1078_RS08505at 279.703 kb on + strand, within HMPREF1078_RS08505at 279.704 kb on - strand, within HMPREF1078_RS08505at 279.704 kb on - strand, within HMPREF1078_RS08505at 279.704 kb on - strand, within HMPREF1078_RS08505at 279.704 kb on - strand, within HMPREF1078_RS08505at 279.704 kb on - strand, within HMPREF1078_RS08505at 279.707 kb on + strand, within HMPREF1078_RS08505at 279.707 kb on + strand, within HMPREF1078_RS08505at 279.708 kb on - strand, within HMPREF1078_RS08505at 279.727 kb on + strand, within HMPREF1078_RS08505at 279.727 kb on + strand, within HMPREF1078_RS08505at 279.727 kb on + strand, within HMPREF1078_RS08505at 279.728 kb on - strand, within HMPREF1078_RS08505at 279.728 kb on - strand, within HMPREF1078_RS08505at 279.732 kb on + strand, within HMPREF1078_RS08505at 279.732 kb on + strand, within HMPREF1078_RS08505at 279.733 kb on - strand, within HMPREF1078_RS08505at 279.774 kb on + strand, within HMPREF1078_RS08505at 279.816 kb on + strandat 279.839 kb on + strandat 279.858 kb on + strandat 279.859 kb on - strandat 279.862 kb on + strandat 279.862 kb on + strandat 279.863 kb on - strandat 279.875 kb on + strandat 279.879 kb on + strandat 279.879 kb on + strandat 279.880 kb on - strandat 279.908 kb on + strandat 279.909 kb on - strandat 279.923 kb on + strandat 279.924 kb on - strandat 279.926 kb on + strandat 279.926 kb on + strandat 279.926 kb on + strandat 279.926 kb on + strandat 279.926 kb on + strandat 279.927 kb on - strandat 279.927 kb on - strandat 279.927 kb on - strandat 279.927 kb on - strandat 279.938 kb on + strandat 279.949 kb on + strandat 279.957 kb on - strandat 279.960 kb on + strandat 279.961 kb on - strandat 280.038 kb on + strandat 280.038 kb on + strandat 280.038 kb on + strandat 280.039 kb on - strandat 280.079 kb on - strandat 280.125 kb on + strand, within HMPREF1078_RS08510at 280.162 kb on - strand, within HMPREF1078_RS08510at 280.185 kb on + strand, within HMPREF1078_RS08510at 280.186 kb on - strand, within HMPREF1078_RS08510at 280.186 kb on - strand, within HMPREF1078_RS08510at 280.281 kb on + strand, within HMPREF1078_RS08510at 280.296 kb on + strand, within HMPREF1078_RS08510at 280.297 kb on - strand, within HMPREF1078_RS08510at 280.314 kb on - strand, within HMPREF1078_RS08510at 280.314 kb on - strand, within HMPREF1078_RS08510at 280.314 kb on - strand, within HMPREF1078_RS08510at 280.341 kb on + strand, within HMPREF1078_RS08510at 280.413 kb on + strand, within HMPREF1078_RS08510at 280.413 kb on + strand, within HMPREF1078_RS08510at 280.414 kb on - strand, within HMPREF1078_RS08510at 280.418 kb on + strand, within HMPREF1078_RS08510at 280.445 kb on + strand, within HMPREF1078_RS08510at 280.446 kb on - strand, within HMPREF1078_RS08510at 280.491 kb on + strand, within HMPREF1078_RS08510at 280.502 kb on - strand, within HMPREF1078_RS08510at 280.550 kb on + strand, within HMPREF1078_RS08510at 280.551 kb on - strand, within HMPREF1078_RS08510at 280.581 kb on + strand, within HMPREF1078_RS08510at 280.767 kb on - strand, within HMPREF1078_RS08510at 280.880 kb on + strand, within HMPREF1078_RS08510at 280.881 kb on - strand, within HMPREF1078_RS08510at 280.881 kb on - strand, within HMPREF1078_RS08510at 280.881 kb on - strand, within HMPREF1078_RS08510at 280.900 kb on - strand, within HMPREF1078_RS08510at 280.911 kb on + strand, within HMPREF1078_RS08510

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day4
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277,243 + HMPREF1078_RS08500 0.46 +0.5
277,243 + HMPREF1078_RS08500 0.46 +0.8
277,251 + HMPREF1078_RS08500 0.47 -0.1
277,252 - HMPREF1078_RS08500 0.47 -1.9
277,320 + HMPREF1078_RS08500 0.51 +2.9
277,321 - HMPREF1078_RS08500 0.51 -2.6
277,333 + HMPREF1078_RS08500 0.52 -0.4
277,333 + HMPREF1078_RS08500 0.52 -0.6
277,453 + HMPREF1078_RS08500 0.59 -0.2
277,497 - HMPREF1078_RS08500 0.62 +0.2
277,549 + HMPREF1078_RS08500 0.66 -2.0
277,549 + HMPREF1078_RS08500 0.66 -0.2
277,549 + HMPREF1078_RS08500 0.66 +0.8
277,549 + HMPREF1078_RS08500 0.66 -0.3
277,550 - HMPREF1078_RS08500 0.66 -0.8
277,550 - HMPREF1078_RS08500 0.66 +1.2
277,555 - HMPREF1078_RS08500 0.66 -1.1
277,555 - HMPREF1078_RS08500 0.66 +0.1
277,571 + HMPREF1078_RS08500 0.67 +0.5
277,571 + HMPREF1078_RS08500 0.67 -1.7
277,572 - HMPREF1078_RS08500 0.67 +0.9
277,572 - HMPREF1078_RS08500 0.67 -0.4
277,572 - HMPREF1078_RS08500 0.67 +0.6
277,575 + HMPREF1078_RS08500 0.67 +0.4
277,575 + HMPREF1078_RS08500 0.67 -0.4
277,575 + HMPREF1078_RS08500 0.67 -1.5
277,576 - HMPREF1078_RS08500 0.67 +1.6
277,576 - HMPREF1078_RS08500 0.67 -0.1
277,576 - HMPREF1078_RS08500 0.67 -1.7
277,576 - HMPREF1078_RS08500 0.67 +0.2
277,840 + HMPREF1078_RS08500 0.84 +1.2
277,855 + HMPREF1078_RS08500 0.85 +0.6
277,968 + -1.0
277,969 - +0.6
277,969 - -0.1
277,977 - +2.2
278,134 - -0.8
278,147 - -2.6
278,149 - -0.8
278,184 + +0.9
278,196 + -2.1
278,196 + -3.5
278,197 - -2.3
278,212 + -1.6
278,238 + +1.2
278,295 + -2.3
278,368 + -2.0
278,440 + HMPREF1078_RS08505 0.12 -1.6
278,441 - HMPREF1078_RS08505 0.12 +1.2
278,484 + HMPREF1078_RS08505 0.15 -1.4
278,485 - HMPREF1078_RS08505 0.15 -0.8
278,596 - HMPREF1078_RS08505 0.21 +0.9
278,631 + HMPREF1078_RS08505 0.23 -2.1
278,655 - HMPREF1078_RS08505 0.25 -1.8
278,657 - HMPREF1078_RS08505 0.25 +0.2
278,712 - HMPREF1078_RS08505 0.28 -0.8
278,745 - HMPREF1078_RS08505 0.30 -0.8
278,748 + HMPREF1078_RS08505 0.30 -2.5
278,749 - HMPREF1078_RS08505 0.30 -3.3
278,749 - HMPREF1078_RS08505 0.30 -2.0
278,749 - HMPREF1078_RS08505 0.30 -2.0
278,762 + HMPREF1078_RS08505 0.31 -1.1
278,763 - HMPREF1078_RS08505 0.31 -1.0
278,779 + HMPREF1078_RS08505 0.32 -1.6
278,779 + HMPREF1078_RS08505 0.32 +0.2
278,796 + HMPREF1078_RS08505 0.33 -1.4
278,797 - HMPREF1078_RS08505 0.33 -3.0
278,800 + HMPREF1078_RS08505 0.33 -1.4
278,806 + HMPREF1078_RS08505 0.33 -1.1
278,807 - HMPREF1078_RS08505 0.33 -1.7
278,833 + HMPREF1078_RS08505 0.35 -2.7
278,872 + HMPREF1078_RS08505 0.37 -1.4
278,873 - HMPREF1078_RS08505 0.37 -1.1
278,915 + HMPREF1078_RS08505 0.40 -1.6
278,921 + HMPREF1078_RS08505 0.40 +0.2
278,922 - HMPREF1078_RS08505 0.40 -1.1
279,108 - HMPREF1078_RS08505 0.51 -0.4
279,164 + HMPREF1078_RS08505 0.54 -0.4
279,165 - HMPREF1078_RS08505 0.54 -1.6
279,200 + HMPREF1078_RS08505 0.56 -3.5
279,221 + HMPREF1078_RS08505 0.57 -2.3
279,221 + HMPREF1078_RS08505 0.57 -2.0
279,221 + HMPREF1078_RS08505 0.57 +1.2
279,223 + HMPREF1078_RS08505 0.58 +0.2
279,223 + HMPREF1078_RS08505 0.58 -2.7
279,224 - HMPREF1078_RS08505 0.58 -2.0
279,246 + HMPREF1078_RS08505 0.59 -2.0
279,269 - HMPREF1078_RS08505 0.60 -1.1
279,270 + HMPREF1078_RS08505 0.60 -0.8
279,276 - HMPREF1078_RS08505 0.61 -0.1
279,277 + HMPREF1078_RS08505 0.61 -0.8
279,277 + HMPREF1078_RS08505 0.61 -2.6
279,277 + HMPREF1078_RS08505 0.61 -2.1
279,277 + HMPREF1078_RS08505 0.61 +0.2
279,278 - HMPREF1078_RS08505 0.61 -3.3
279,278 - HMPREF1078_RS08505 0.61 -1.1
279,278 - HMPREF1078_RS08505 0.61 -2.3
279,278 - HMPREF1078_RS08505 0.61 -0.5
279,312 - HMPREF1078_RS08505 0.63 -2.3
279,453 + HMPREF1078_RS08505 0.71 -0.6
279,498 - HMPREF1078_RS08505 0.74 -2.3
279,512 - HMPREF1078_RS08505 0.74 -2.5
279,526 + HMPREF1078_RS08505 0.75 -1.1
279,527 - HMPREF1078_RS08505 0.75 -1.4
279,600 - HMPREF1078_RS08505 0.80 -2.7
279,630 - HMPREF1078_RS08505 0.81 +0.2
279,630 - HMPREF1078_RS08505 0.81 -0.8
279,699 + HMPREF1078_RS08505 0.85 +0.2
279,699 + HMPREF1078_RS08505 0.85 -3.4
279,699 + HMPREF1078_RS08505 0.85 -3.4
279,699 + HMPREF1078_RS08505 0.85 -0.4
279,700 - HMPREF1078_RS08505 0.85 +0.2
279,700 - HMPREF1078_RS08505 0.85 -3.0
279,700 - HMPREF1078_RS08505 0.85 -3.4
279,700 - HMPREF1078_RS08505 0.85 -2.5
279,700 - HMPREF1078_RS08505 0.85 -0.4
279,700 - HMPREF1078_RS08505 0.85 -1.4
279,703 + HMPREF1078_RS08505 0.86 +1.2
279,703 + HMPREF1078_RS08505 0.86 -1.8
279,703 + HMPREF1078_RS08505 0.86 -2.5
279,703 + HMPREF1078_RS08505 0.86 -2.7
279,704 - HMPREF1078_RS08505 0.86 -2.8
279,704 - HMPREF1078_RS08505 0.86 +0.2
279,704 - HMPREF1078_RS08505 0.86 -1.6
279,704 - HMPREF1078_RS08505 0.86 +1.2
279,704 - HMPREF1078_RS08505 0.86 -0.8
279,707 + HMPREF1078_RS08505 0.86 -2.8
279,707 + HMPREF1078_RS08505 0.86 -2.3
279,708 - HMPREF1078_RS08505 0.86 -2.5
279,727 + HMPREF1078_RS08505 0.87 +1.2
279,727 + HMPREF1078_RS08505 0.87 -3.9
279,727 + HMPREF1078_RS08505 0.87 -1.1
279,728 - HMPREF1078_RS08505 0.87 -3.0
279,728 - HMPREF1078_RS08505 0.87 -2.5
279,732 + HMPREF1078_RS08505 0.87 -2.9
279,732 + HMPREF1078_RS08505 0.87 -1.6
279,733 - HMPREF1078_RS08505 0.87 -3.3
279,774 + HMPREF1078_RS08505 0.90 -2.5
279,816 + +0.2
279,839 + +0.2
279,858 + -2.5
279,859 - -2.5
279,862 + -1.6
279,862 + +1.2
279,863 - -3.0
279,875 + -1.4
279,879 + -0.8
279,879 + +0.2
279,880 - -1.1
279,908 + -1.1
279,909 - -1.8
279,923 + -2.1
279,924 - -1.4
279,926 + -2.3
279,926 + -3.0
279,926 + -2.4
279,926 + -3.0
279,926 + -3.0
279,927 - -3.0
279,927 - -3.6
279,927 - -4.2
279,927 - -2.0
279,938 + -1.5
279,949 + -2.7
279,957 - +1.1
279,960 + +0.6
279,961 - +0.3
280,038 + -0.9
280,038 + -0.8
280,038 + +0.6
280,039 - -2.9
280,079 - +0.0
280,125 + HMPREF1078_RS08510 0.13 -0.3
280,162 - HMPREF1078_RS08510 0.16 -0.8
280,185 + HMPREF1078_RS08510 0.17 +0.1
280,186 - HMPREF1078_RS08510 0.17 -2.7
280,186 - HMPREF1078_RS08510 0.17 +0.7
280,281 + HMPREF1078_RS08510 0.25 -1.8
280,296 + HMPREF1078_RS08510 0.26 +2.2
280,297 - HMPREF1078_RS08510 0.26 +0.2
280,314 - HMPREF1078_RS08510 0.27 -0.6
280,314 - HMPREF1078_RS08510 0.27 -0.7
280,314 - HMPREF1078_RS08510 0.27 -2.5
280,341 + HMPREF1078_RS08510 0.29 +1.8
280,413 + HMPREF1078_RS08510 0.34 -0.1
280,413 + HMPREF1078_RS08510 0.34 +1.8
280,414 - HMPREF1078_RS08510 0.34 -1.5
280,418 + HMPREF1078_RS08510 0.35 -1.8
280,445 + HMPREF1078_RS08510 0.37 +0.2
280,446 - HMPREF1078_RS08510 0.37 +0.2
280,491 + HMPREF1078_RS08510 0.40 -0.1
280,502 - HMPREF1078_RS08510 0.41 +1.0
280,550 + HMPREF1078_RS08510 0.45 -0.5
280,551 - HMPREF1078_RS08510 0.45 +0.5
280,581 + HMPREF1078_RS08510 0.47 -2.5
280,767 - HMPREF1078_RS08510 0.61 +0.5
280,880 + HMPREF1078_RS08510 0.69 -0.8
280,881 - HMPREF1078_RS08510 0.69 -0.6
280,881 - HMPREF1078_RS08510 0.69 -0.0
280,881 - HMPREF1078_RS08510 0.69 +1.7
280,900 - HMPREF1078_RS08510 0.71 -0.5
280,911 + HMPREF1078_RS08510 0.72 +0.8

Or see this region's nucleotide sequence