Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS07310 and HMPREF1078_RS07315 are separated by 59 nucleotides HMPREF1078_RS07315 and HMPREF1078_RS07320 are separated by 106 nucleotides
HMPREF1078_RS07310: HMPREF1078_RS07310 - methionine--tRNA ligase, at 890,537 to 892,576
_RS07310
HMPREF1078_RS07315: HMPREF1078_RS07315 - DegT/DnrJ/EryC1/StrS family aminotransferase, at 892,636 to 893,802
_RS07315
HMPREF1078_RS07320: HMPREF1078_RS07320 - Gfo/Idh/MocA family oxidoreductase, at 893,909 to 894,925
_RS07320
Position (kb) 892
893
894 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 892.229 kb on + strand, within HMPREF1078_RS07310 at 892.229 kb on + strand, within HMPREF1078_RS07310 at 892.229 kb on + strand, within HMPREF1078_RS07310 at 892.229 kb on + strand, within HMPREF1078_RS07310 at 892.229 kb on + strand, within HMPREF1078_RS07310 at 892.230 kb on - strand, within HMPREF1078_RS07310 at 892.551 kb on + strand at 892.551 kb on + strand at 892.610 kb on + strand at 892.629 kb on + strand at 892.630 kb on - strand at 892.630 kb on - strand at 892.632 kb on + strand at 892.632 kb on + strand at 892.633 kb on - strand at 892.633 kb on - strand at 892.633 kb on - strand at 892.633 kb on - strand at 892.633 kb on - strand at 892.634 kb on + strand at 892.634 kb on + strand at 892.635 kb on - strand at 892.635 kb on - strand at 892.653 kb on - strand at 892.653 kb on - strand at 892.678 kb on + strand at 892.679 kb on - strand at 892.679 kb on - strand at 892.787 kb on - strand, within HMPREF1078_RS07315 at 892.801 kb on + strand, within HMPREF1078_RS07315 at 892.801 kb on + strand, within HMPREF1078_RS07315 at 892.886 kb on + strand, within HMPREF1078_RS07315 at 892.900 kb on + strand, within HMPREF1078_RS07315 at 892.900 kb on + strand, within HMPREF1078_RS07315 at 892.900 kb on + strand, within HMPREF1078_RS07315 at 892.901 kb on - strand, within HMPREF1078_RS07315 at 892.902 kb on + strand, within HMPREF1078_RS07315 at 892.902 kb on + strand, within HMPREF1078_RS07315 at 892.902 kb on + strand, within HMPREF1078_RS07315 at 892.903 kb on - strand, within HMPREF1078_RS07315 at 892.903 kb on - strand, within HMPREF1078_RS07315 at 892.903 kb on - strand, within HMPREF1078_RS07315 at 892.903 kb on - strand, within HMPREF1078_RS07315 at 892.969 kb on - strand, within HMPREF1078_RS07315 at 892.969 kb on - strand, within HMPREF1078_RS07315 at 892.977 kb on + strand, within HMPREF1078_RS07315 at 892.978 kb on - strand, within HMPREF1078_RS07315 at 893.074 kb on - strand, within HMPREF1078_RS07315 at 893.101 kb on + strand, within HMPREF1078_RS07315 at 893.101 kb on + strand, within HMPREF1078_RS07315 at 893.101 kb on + strand, within HMPREF1078_RS07315 at 893.101 kb on + strand, within HMPREF1078_RS07315 at 893.101 kb on + strand, within HMPREF1078_RS07315 at 893.101 kb on + strand, within HMPREF1078_RS07315 at 893.101 kb on - strand, within HMPREF1078_RS07315 at 893.102 kb on - strand, within HMPREF1078_RS07315 at 893.102 kb on - strand, within HMPREF1078_RS07315 at 893.102 kb on - strand, within HMPREF1078_RS07315 at 893.105 kb on + strand, within HMPREF1078_RS07315 at 893.187 kb on + strand, within HMPREF1078_RS07315 at 893.187 kb on + strand, within HMPREF1078_RS07315 at 893.317 kb on + strand, within HMPREF1078_RS07315 at 893.318 kb on - strand, within HMPREF1078_RS07315 at 893.507 kb on - strand, within HMPREF1078_RS07315 at 893.517 kb on + strand, within HMPREF1078_RS07315 at 893.517 kb on + strand, within HMPREF1078_RS07315 at 893.528 kb on + strand, within HMPREF1078_RS07315 at 893.593 kb on + strand, within HMPREF1078_RS07315 at 893.635 kb on - strand, within HMPREF1078_RS07315 at 893.635 kb on - strand, within HMPREF1078_RS07315 at 893.646 kb on - strand, within HMPREF1078_RS07315 at 893.700 kb on + strand at 893.735 kb on - strand at 893.735 kb on - strand at 893.735 kb on - strand at 893.735 kb on - strand at 893.736 kb on + strand at 893.821 kb on - strand at 893.835 kb on + strand at 894.050 kb on + strand, within HMPREF1078_RS07320 at 894.084 kb on + strand, within HMPREF1078_RS07320 at 894.085 kb on - strand, within HMPREF1078_RS07320 at 894.114 kb on + strand, within HMPREF1078_RS07320 at 894.114 kb on + strand, within HMPREF1078_RS07320 at 894.125 kb on - strand, within HMPREF1078_RS07320 at 894.236 kb on + strand, within HMPREF1078_RS07320 at 894.236 kb on + strand, within HMPREF1078_RS07320 at 894.236 kb on + strand, within HMPREF1078_RS07320 at 894.236 kb on + strand, within HMPREF1078_RS07320 at 894.237 kb on - strand, within HMPREF1078_RS07320 at 894.331 kb on + strand, within HMPREF1078_RS07320 at 894.337 kb on - strand, within HMPREF1078_RS07320 at 894.347 kb on + strand, within HMPREF1078_RS07320 at 894.348 kb on - strand, within HMPREF1078_RS07320 at 894.349 kb on + strand, within HMPREF1078_RS07320 at 894.350 kb on - strand, within HMPREF1078_RS07320 at 894.390 kb on - strand, within HMPREF1078_RS07320 at 894.394 kb on + strand, within HMPREF1078_RS07320 at 894.472 kb on + strand, within HMPREF1078_RS07320 at 894.472 kb on + strand, within HMPREF1078_RS07320 at 894.473 kb on - strand, within HMPREF1078_RS07320 at 894.476 kb on + strand, within HMPREF1078_RS07320 at 894.476 kb on + strand, within HMPREF1078_RS07320 at 894.476 kb on + strand, within HMPREF1078_RS07320 at 894.477 kb on - strand, within HMPREF1078_RS07320 at 894.492 kb on + strand, within HMPREF1078_RS07320 at 894.609 kb on - strand, within HMPREF1078_RS07320 at 894.647 kb on - strand, within HMPREF1078_RS07320 at 894.647 kb on - strand, within HMPREF1078_RS07320 at 894.647 kb on - strand, within HMPREF1078_RS07320 at 894.692 kb on + strand, within HMPREF1078_RS07320 at 894.693 kb on - strand, within HMPREF1078_RS07320 at 894.694 kb on + strand, within HMPREF1078_RS07320 at 894.695 kb on - strand, within HMPREF1078_RS07320 at 894.695 kb on - strand, within HMPREF1078_RS07320 at 894.780 kb on - strand, within HMPREF1078_RS07320 at 894.781 kb on - strand, within HMPREF1078_RS07320 at 894.782 kb on - strand, within HMPREF1078_RS07320
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day4 remove 892,229 + HMPREF1078_RS07310 0.83 -2.2 892,229 + HMPREF1078_RS07310 0.83 -0.7 892,229 + HMPREF1078_RS07310 0.83 -2.1 892,229 + HMPREF1078_RS07310 0.83 -3.4 892,229 + HMPREF1078_RS07310 0.83 -1.3 892,230 - HMPREF1078_RS07310 0.83 -2.5 892,551 + -4.0 892,551 + -4.7 892,610 + +0.5 892,629 + +0.3 892,630 - -1.3 892,630 - -2.9 892,632 + -2.1 892,632 + -1.4 892,633 - -4.4 892,633 - -2.2 892,633 - -1.8 892,633 - -2.3 892,633 - -3.0 892,634 + -0.4 892,634 + -2.0 892,635 - +1.0 892,635 - +1.0 892,653 - +0.7 892,653 - -3.5 892,678 + -3.2 892,679 - -1.4 892,679 - -3.4 892,787 - HMPREF1078_RS07315 0.13 -1.0 892,801 + HMPREF1078_RS07315 0.14 -0.3 892,801 + HMPREF1078_RS07315 0.14 -0.9 892,886 + HMPREF1078_RS07315 0.21 -2.3 892,900 + HMPREF1078_RS07315 0.23 -2.4 892,900 + HMPREF1078_RS07315 0.23 -1.2 892,900 + HMPREF1078_RS07315 0.23 -3.6 892,901 - HMPREF1078_RS07315 0.23 -0.7 892,902 + HMPREF1078_RS07315 0.23 -1.3 892,902 + HMPREF1078_RS07315 0.23 -0.5 892,902 + HMPREF1078_RS07315 0.23 -2.0 892,903 - HMPREF1078_RS07315 0.23 -3.1 892,903 - HMPREF1078_RS07315 0.23 -4.3 892,903 - HMPREF1078_RS07315 0.23 -3.5 892,903 - HMPREF1078_RS07315 0.23 -0.5 892,969 - HMPREF1078_RS07315 0.29 -2.7 892,969 - HMPREF1078_RS07315 0.29 -4.4 892,977 + HMPREF1078_RS07315 0.29 -1.9 892,978 - HMPREF1078_RS07315 0.29 -3.0 893,074 - HMPREF1078_RS07315 0.38 -1.5 893,101 + HMPREF1078_RS07315 0.40 -0.1 893,101 + HMPREF1078_RS07315 0.40 -2.4 893,101 + HMPREF1078_RS07315 0.40 -1.0 893,101 + HMPREF1078_RS07315 0.40 -1.4 893,101 + HMPREF1078_RS07315 0.40 -1.1 893,101 + HMPREF1078_RS07315 0.40 -1.6 893,101 - HMPREF1078_RS07315 0.40 -1.4 893,102 - HMPREF1078_RS07315 0.40 -1.3 893,102 - HMPREF1078_RS07315 0.40 -1.8 893,102 - HMPREF1078_RS07315 0.40 -2.8 893,105 + HMPREF1078_RS07315 0.40 -0.5 893,187 + HMPREF1078_RS07315 0.47 -2.4 893,187 + HMPREF1078_RS07315 0.47 -3.5 893,317 + HMPREF1078_RS07315 0.58 -2.9 893,318 - HMPREF1078_RS07315 0.58 -2.8 893,507 - HMPREF1078_RS07315 0.75 -3.5 893,517 + HMPREF1078_RS07315 0.75 -3.0 893,517 + HMPREF1078_RS07315 0.75 -2.1 893,528 + HMPREF1078_RS07315 0.76 -1.3 893,593 + HMPREF1078_RS07315 0.82 -1.7 893,635 - HMPREF1078_RS07315 0.86 -2.7 893,635 - HMPREF1078_RS07315 0.86 -2.3 893,646 - HMPREF1078_RS07315 0.87 -0.8 893,700 + -2.4 893,735 - -2.0 893,735 - -1.1 893,735 - -1.6 893,735 - -0.4 893,736 + -2.3 893,821 - -0.7 893,835 + -0.8 894,050 + HMPREF1078_RS07320 0.14 -2.4 894,084 + HMPREF1078_RS07320 0.17 -1.3 894,085 - HMPREF1078_RS07320 0.17 -2.0 894,114 + HMPREF1078_RS07320 0.20 -1.0 894,114 + HMPREF1078_RS07320 0.20 -2.2 894,125 - HMPREF1078_RS07320 0.21 -2.5 894,236 + HMPREF1078_RS07320 0.32 -1.7 894,236 + HMPREF1078_RS07320 0.32 -3.2 894,236 + HMPREF1078_RS07320 0.32 +1.6 894,236 + HMPREF1078_RS07320 0.32 -2.5 894,237 - HMPREF1078_RS07320 0.32 -1.0 894,331 + HMPREF1078_RS07320 0.41 -3.3 894,337 - HMPREF1078_RS07320 0.42 -2.2 894,347 + HMPREF1078_RS07320 0.43 -1.4 894,348 - HMPREF1078_RS07320 0.43 -1.7 894,349 + HMPREF1078_RS07320 0.43 -2.5 894,350 - HMPREF1078_RS07320 0.43 +0.0 894,390 - HMPREF1078_RS07320 0.47 -3.5 894,394 + HMPREF1078_RS07320 0.48 -2.2 894,472 + HMPREF1078_RS07320 0.55 -1.5 894,472 + HMPREF1078_RS07320 0.55 +0.4 894,473 - HMPREF1078_RS07320 0.55 -1.2 894,476 + HMPREF1078_RS07320 0.56 -2.5 894,476 + HMPREF1078_RS07320 0.56 -2.4 894,476 + HMPREF1078_RS07320 0.56 +0.5 894,477 - HMPREF1078_RS07320 0.56 -2.8 894,492 + HMPREF1078_RS07320 0.57 -1.6 894,609 - HMPREF1078_RS07320 0.69 -1.7 894,647 - HMPREF1078_RS07320 0.73 -1.8 894,647 - HMPREF1078_RS07320 0.73 -1.7 894,647 - HMPREF1078_RS07320 0.73 -2.7 894,692 + HMPREF1078_RS07320 0.77 -1.0 894,693 - HMPREF1078_RS07320 0.77 +0.0 894,694 + HMPREF1078_RS07320 0.77 -1.5 894,695 - HMPREF1078_RS07320 0.77 -0.7 894,695 - HMPREF1078_RS07320 0.77 -1.9 894,780 - HMPREF1078_RS07320 0.86 -2.5 894,781 - HMPREF1078_RS07320 0.86 -0.3 894,782 - HMPREF1078_RS07320 0.86 -1.5
Or see this region's nucleotide sequence