Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS07210 and HMPREF1078_RS07215 are separated by 89 nucleotides HMPREF1078_RS07215 and HMPREF1078_RS07220 are separated by 3 nucleotides
HMPREF1078_RS07210: HMPREF1078_RS07210 - alanine dehydrogenase, at 864,104 to 865,303
_RS07210
HMPREF1078_RS07215: HMPREF1078_RS07215 - 2-oxoacid:acceptor oxidoreductase subunit alpha, at 865,393 to 867,249
_RS07215
HMPREF1078_RS07220: HMPREF1078_RS07220 - 2-oxoacid:ferredoxin oxidoreductase subunit beta, at 867,253 to 868,269
_RS07220
Position (kb) 865
866
867
868 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 864.436 kb on + strand, within HMPREF1078_RS07210 at 864.439 kb on + strand, within HMPREF1078_RS07210 at 864.439 kb on + strand, within HMPREF1078_RS07210 at 864.524 kb on + strand, within HMPREF1078_RS07210 at 864.628 kb on + strand, within HMPREF1078_RS07210 at 864.628 kb on + strand, within HMPREF1078_RS07210 at 864.775 kb on + strand, within HMPREF1078_RS07210 at 864.776 kb on - strand, within HMPREF1078_RS07210 at 864.804 kb on + strand, within HMPREF1078_RS07210 at 864.896 kb on + strand, within HMPREF1078_RS07210 at 864.919 kb on + strand, within HMPREF1078_RS07210 at 864.920 kb on - strand, within HMPREF1078_RS07210 at 864.935 kb on - strand, within HMPREF1078_RS07210 at 864.963 kb on + strand, within HMPREF1078_RS07210 at 864.967 kb on + strand, within HMPREF1078_RS07210 at 865.100 kb on - strand, within HMPREF1078_RS07210 at 865.123 kb on + strand, within HMPREF1078_RS07210 at 865.123 kb on + strand, within HMPREF1078_RS07210 at 865.211 kb on + strand at 865.211 kb on + strand at 865.212 kb on - strand at 865.212 kb on - strand at 865.218 kb on - strand at 865.285 kb on - strand at 865.286 kb on + strand at 865.287 kb on - strand at 865.339 kb on + strand at 865.381 kb on + strand at 865.383 kb on + strand at 865.384 kb on - strand at 865.384 kb on - strand at 865.384 kb on - strand at 865.384 kb on - strand at 865.387 kb on + strand at 865.387 kb on + strand at 865.387 kb on + strand at 865.387 kb on + strand at 865.388 kb on - strand at 865.390 kb on - strand at 865.392 kb on + strand at 865.573 kb on - strand at 865.580 kb on + strand, within HMPREF1078_RS07215 at 865.581 kb on - strand, within HMPREF1078_RS07215 at 865.822 kb on - strand, within HMPREF1078_RS07215 at 865.887 kb on + strand, within HMPREF1078_RS07215 at 865.887 kb on + strand, within HMPREF1078_RS07215 at 865.888 kb on - strand, within HMPREF1078_RS07215 at 865.894 kb on - strand, within HMPREF1078_RS07215 at 866.023 kb on + strand, within HMPREF1078_RS07215 at 866.029 kb on + strand, within HMPREF1078_RS07215 at 866.029 kb on + strand, within HMPREF1078_RS07215 at 866.040 kb on + strand, within HMPREF1078_RS07215 at 866.041 kb on - strand, within HMPREF1078_RS07215 at 866.118 kb on + strand, within HMPREF1078_RS07215 at 866.118 kb on + strand, within HMPREF1078_RS07215 at 866.118 kb on + strand, within HMPREF1078_RS07215 at 866.119 kb on - strand, within HMPREF1078_RS07215 at 866.165 kb on + strand, within HMPREF1078_RS07215 at 866.166 kb on - strand, within HMPREF1078_RS07215 at 866.232 kb on + strand, within HMPREF1078_RS07215 at 866.286 kb on + strand, within HMPREF1078_RS07215 at 866.439 kb on + strand, within HMPREF1078_RS07215 at 866.583 kb on + strand, within HMPREF1078_RS07215 at 866.583 kb on + strand, within HMPREF1078_RS07215 at 866.583 kb on + strand, within HMPREF1078_RS07215 at 866.584 kb on - strand, within HMPREF1078_RS07215 at 866.584 kb on - strand, within HMPREF1078_RS07215 at 866.584 kb on - strand, within HMPREF1078_RS07215 at 866.584 kb on - strand, within HMPREF1078_RS07215 at 866.684 kb on - strand, within HMPREF1078_RS07215 at 866.684 kb on - strand, within HMPREF1078_RS07215 at 866.684 kb on - strand, within HMPREF1078_RS07215 at 866.695 kb on + strand, within HMPREF1078_RS07215 at 866.764 kb on - strand, within HMPREF1078_RS07215 at 866.829 kb on + strand, within HMPREF1078_RS07215 at 866.971 kb on + strand, within HMPREF1078_RS07215 at 866.971 kb on + strand, within HMPREF1078_RS07215 at 866.971 kb on + strand, within HMPREF1078_RS07215 at 866.972 kb on - strand, within HMPREF1078_RS07215 at 867.088 kb on + strand at 867.136 kb on + strand at 867.304 kb on + strand at 867.304 kb on + strand at 867.304 kb on + strand at 867.304 kb on + strand at 867.305 kb on - strand at 867.308 kb on + strand at 867.308 kb on + strand at 867.309 kb on - strand at 867.309 kb on - strand at 867.375 kb on - strand, within HMPREF1078_RS07220 at 867.390 kb on + strand, within HMPREF1078_RS07220 at 867.390 kb on + strand, within HMPREF1078_RS07220 at 867.394 kb on - strand, within HMPREF1078_RS07220 at 867.394 kb on - strand, within HMPREF1078_RS07220 at 867.394 kb on - strand, within HMPREF1078_RS07220 at 867.402 kb on + strand, within HMPREF1078_RS07220 at 867.403 kb on - strand, within HMPREF1078_RS07220 at 867.436 kb on + strand, within HMPREF1078_RS07220 at 867.437 kb on - strand, within HMPREF1078_RS07220 at 867.437 kb on - strand, within HMPREF1078_RS07220 at 867.439 kb on + strand, within HMPREF1078_RS07220 at 867.439 kb on + strand, within HMPREF1078_RS07220 at 867.440 kb on - strand, within HMPREF1078_RS07220 at 867.451 kb on + strand, within HMPREF1078_RS07220 at 867.452 kb on - strand, within HMPREF1078_RS07220 at 867.452 kb on - strand, within HMPREF1078_RS07220 at 867.452 kb on - strand, within HMPREF1078_RS07220 at 867.463 kb on - strand, within HMPREF1078_RS07220 at 867.635 kb on + strand, within HMPREF1078_RS07220 at 867.635 kb on + strand, within HMPREF1078_RS07220 at 867.636 kb on - strand, within HMPREF1078_RS07220 at 867.636 kb on - strand, within HMPREF1078_RS07220 at 867.636 kb on - strand, within HMPREF1078_RS07220 at 867.636 kb on - strand, within HMPREF1078_RS07220 at 867.636 kb on - strand, within HMPREF1078_RS07220 at 867.637 kb on + strand, within HMPREF1078_RS07220 at 867.637 kb on + strand, within HMPREF1078_RS07220 at 867.638 kb on - strand, within HMPREF1078_RS07220 at 867.638 kb on - strand, within HMPREF1078_RS07220 at 867.638 kb on - strand, within HMPREF1078_RS07220 at 867.658 kb on + strand, within HMPREF1078_RS07220 at 867.832 kb on - strand, within HMPREF1078_RS07220 at 867.886 kb on - strand, within HMPREF1078_RS07220 at 868.037 kb on + strand, within HMPREF1078_RS07220 at 868.038 kb on + strand, within HMPREF1078_RS07220 at 868.059 kb on - strand, within HMPREF1078_RS07220 at 868.120 kb on - strand, within HMPREF1078_RS07220 at 868.165 kb on + strand, within HMPREF1078_RS07220 at 868.165 kb on + strand, within HMPREF1078_RS07220 at 868.165 kb on + strand, within HMPREF1078_RS07220 at 868.166 kb on - strand, within HMPREF1078_RS07220
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day4 remove 864,436 + HMPREF1078_RS07210 0.28 -1.9 864,439 + HMPREF1078_RS07210 0.28 +1.6 864,439 + HMPREF1078_RS07210 0.28 -0.4 864,524 + HMPREF1078_RS07210 0.35 -0.3 864,628 + HMPREF1078_RS07210 0.44 -0.6 864,628 + HMPREF1078_RS07210 0.44 -1.0 864,775 + HMPREF1078_RS07210 0.56 +0.6 864,776 - HMPREF1078_RS07210 0.56 -0.3 864,804 + HMPREF1078_RS07210 0.58 +0.1 864,896 + HMPREF1078_RS07210 0.66 -1.7 864,919 + HMPREF1078_RS07210 0.68 +0.5 864,920 - HMPREF1078_RS07210 0.68 -0.3 864,935 - HMPREF1078_RS07210 0.69 -0.2 864,963 + HMPREF1078_RS07210 0.72 -2.9 864,967 + HMPREF1078_RS07210 0.72 -0.7 865,100 - HMPREF1078_RS07210 0.83 -1.8 865,123 + HMPREF1078_RS07210 0.85 +0.3 865,123 + HMPREF1078_RS07210 0.85 -1.4 865,211 + +1.0 865,211 + +0.0 865,212 - -2.0 865,212 - -0.0 865,218 - +3.0 865,285 - -0.8 865,286 + -0.5 865,287 - +1.0 865,339 + +0.5 865,381 + -1.7 865,383 + -2.7 865,384 - -3.4 865,384 - -1.5 865,384 - -3.1 865,384 - -2.3 865,387 + -1.6 865,387 + -2.1 865,387 + -2.3 865,387 + -1.3 865,388 - -3.2 865,390 - -1.0 865,392 + -2.5 865,573 - -3.7 865,580 + HMPREF1078_RS07215 0.10 -0.5 865,581 - HMPREF1078_RS07215 0.10 -3.0 865,822 - HMPREF1078_RS07215 0.23 -2.1 865,887 + HMPREF1078_RS07215 0.27 -1.3 865,887 + HMPREF1078_RS07215 0.27 -1.5 865,888 - HMPREF1078_RS07215 0.27 -2.3 865,894 - HMPREF1078_RS07215 0.27 -1.8 866,023 + HMPREF1078_RS07215 0.34 -1.1 866,029 + HMPREF1078_RS07215 0.34 -0.5 866,029 + HMPREF1078_RS07215 0.34 -2.9 866,040 + HMPREF1078_RS07215 0.35 -3.0 866,041 - HMPREF1078_RS07215 0.35 +1.0 866,118 + HMPREF1078_RS07215 0.39 -0.5 866,118 + HMPREF1078_RS07215 0.39 -2.4 866,118 + HMPREF1078_RS07215 0.39 -0.4 866,119 - HMPREF1078_RS07215 0.39 -0.4 866,165 + HMPREF1078_RS07215 0.42 -3.1 866,166 - HMPREF1078_RS07215 0.42 -0.3 866,232 + HMPREF1078_RS07215 0.45 -2.0 866,286 + HMPREF1078_RS07215 0.48 +0.0 866,439 + HMPREF1078_RS07215 0.56 -3.6 866,583 + HMPREF1078_RS07215 0.64 -3.7 866,583 + HMPREF1078_RS07215 0.64 -3.2 866,583 + HMPREF1078_RS07215 0.64 -1.8 866,584 - HMPREF1078_RS07215 0.64 -1.1 866,584 - HMPREF1078_RS07215 0.64 -2.4 866,584 - HMPREF1078_RS07215 0.64 -0.5 866,584 - HMPREF1078_RS07215 0.64 -3.5 866,684 - HMPREF1078_RS07215 0.70 -1.3 866,684 - HMPREF1078_RS07215 0.70 -3.7 866,684 - HMPREF1078_RS07215 0.70 -1.8 866,695 + HMPREF1078_RS07215 0.70 -1.5 866,764 - HMPREF1078_RS07215 0.74 -2.2 866,829 + HMPREF1078_RS07215 0.77 +1.0 866,971 + HMPREF1078_RS07215 0.85 -2.1 866,971 + HMPREF1078_RS07215 0.85 -2.1 866,971 + HMPREF1078_RS07215 0.85 -1.0 866,972 - HMPREF1078_RS07215 0.85 -1.8 867,088 + -0.8 867,136 + -2.0 867,304 + -4.0 867,304 + +3.0 867,304 + -2.7 867,304 + -0.8 867,305 - -2.6 867,308 + -2.5 867,308 + -1.0 867,309 - -1.5 867,309 - +0.3 867,375 - HMPREF1078_RS07220 0.12 -1.2 867,390 + HMPREF1078_RS07220 0.13 -4.1 867,390 + HMPREF1078_RS07220 0.13 -1.8 867,394 - HMPREF1078_RS07220 0.14 -0.5 867,394 - HMPREF1078_RS07220 0.14 -2.1 867,394 - HMPREF1078_RS07220 0.14 -0.5 867,402 + HMPREF1078_RS07220 0.15 -0.5 867,403 - HMPREF1078_RS07220 0.15 -3.3 867,436 + HMPREF1078_RS07220 0.18 -1.5 867,437 - HMPREF1078_RS07220 0.18 +1.0 867,437 - HMPREF1078_RS07220 0.18 -3.4 867,439 + HMPREF1078_RS07220 0.18 +0.0 867,439 + HMPREF1078_RS07220 0.18 -1.0 867,440 - HMPREF1078_RS07220 0.18 -1.3 867,451 + HMPREF1078_RS07220 0.19 +0.5 867,452 - HMPREF1078_RS07220 0.20 -2.8 867,452 - HMPREF1078_RS07220 0.20 -1.0 867,452 - HMPREF1078_RS07220 0.20 -1.5 867,463 - HMPREF1078_RS07220 0.21 -2.0 867,635 + HMPREF1078_RS07220 0.38 -2.8 867,635 + HMPREF1078_RS07220 0.38 -0.5 867,636 - HMPREF1078_RS07220 0.38 -4.1 867,636 - HMPREF1078_RS07220 0.38 -2.4 867,636 - HMPREF1078_RS07220 0.38 +0.0 867,636 - HMPREF1078_RS07220 0.38 +1.0 867,636 - HMPREF1078_RS07220 0.38 -1.8 867,637 + HMPREF1078_RS07220 0.38 -1.4 867,637 + HMPREF1078_RS07220 0.38 -1.1 867,638 - HMPREF1078_RS07220 0.38 -0.5 867,638 - HMPREF1078_RS07220 0.38 -2.4 867,638 - HMPREF1078_RS07220 0.38 +1.0 867,658 + HMPREF1078_RS07220 0.40 -2.4 867,832 - HMPREF1078_RS07220 0.57 -2.7 867,886 - HMPREF1078_RS07220 0.62 -3.4 868,037 + HMPREF1078_RS07220 0.77 -1.8 868,038 + HMPREF1078_RS07220 0.77 -2.4 868,059 - HMPREF1078_RS07220 0.79 -2.7 868,120 - HMPREF1078_RS07220 0.85 +0.0 868,165 + HMPREF1078_RS07220 0.90 -1.5 868,165 + HMPREF1078_RS07220 0.90 -1.8 868,165 + HMPREF1078_RS07220 0.90 +0.3 868,166 - HMPREF1078_RS07220 0.90 -0.7
Or see this region's nucleotide sequence