Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS07195 and HMPREF1078_RS07200 are separated by 1 nucleotides HMPREF1078_RS07200 and HMPREF1078_RS07205 are separated by 279 nucleotides HMPREF1078_RS07205 and HMPREF1078_RS07210 are separated by 82 nucleotides
HMPREF1078_RS07195: HMPREF1078_RS07195 - nucleotide sugar dehydrogenase, at 861,294 to 862,583
_RS07195
HMPREF1078_RS07200: HMPREF1078_RS07200 - viroplasmin family protein, at 862,585 to 863,220
_RS07200
HMPREF1078_RS07205: HMPREF1078_RS07205 - shikimate kinase, at 863,500 to 864,021
_RS07205
HMPREF1078_RS07210: HMPREF1078_RS07210 - alanine dehydrogenase, at 864,104 to 865,303
_RS07210
Position (kb) 863
864
865 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 862.531 kb on + strand at 862.531 kb on + strand at 862.532 kb on - strand at 862.532 kb on - strand at 862.532 kb on - strand at 862.532 kb on - strand at 862.532 kb on - strand at 862.533 kb on + strand at 862.533 kb on + strand at 862.533 kb on + strand at 862.533 kb on + strand at 862.534 kb on - strand at 862.534 kb on - strand at 862.534 kb on - strand at 862.534 kb on - strand at 862.567 kb on + strand at 862.586 kb on + strand at 862.586 kb on + strand at 862.587 kb on - strand at 862.644 kb on + strand at 862.655 kb on + strand, within HMPREF1078_RS07200 at 862.655 kb on + strand, within HMPREF1078_RS07200 at 862.655 kb on + strand, within HMPREF1078_RS07200 at 862.655 kb on + strand, within HMPREF1078_RS07200 at 862.655 kb on + strand, within HMPREF1078_RS07200 at 862.655 kb on + strand, within HMPREF1078_RS07200 at 862.656 kb on - strand, within HMPREF1078_RS07200 at 862.656 kb on - strand, within HMPREF1078_RS07200 at 862.656 kb on - strand, within HMPREF1078_RS07200 at 862.659 kb on + strand, within HMPREF1078_RS07200 at 862.756 kb on + strand, within HMPREF1078_RS07200 at 862.788 kb on - strand, within HMPREF1078_RS07200 at 863.054 kb on + strand, within HMPREF1078_RS07200 at 863.054 kb on + strand, within HMPREF1078_RS07200 at 863.055 kb on - strand, within HMPREF1078_RS07200 at 863.115 kb on - strand, within HMPREF1078_RS07200 at 863.168 kb on + strand at 863.168 kb on + strand at 863.170 kb on + strand at 863.171 kb on - strand at 863.171 kb on - strand at 863.171 kb on - strand at 863.171 kb on - strand at 863.171 kb on - strand at 863.184 kb on + strand at 863.194 kb on + strand at 863.197 kb on + strand at 863.198 kb on - strand at 863.201 kb on + strand at 863.202 kb on - strand at 863.202 kb on - strand at 863.202 kb on - strand at 863.202 kb on - strand at 863.204 kb on + strand at 863.236 kb on - strand at 863.280 kb on + strand at 863.335 kb on - strand at 863.335 kb on - strand at 863.352 kb on + strand at 863.493 kb on + strand at 863.495 kb on + strand at 863.495 kb on + strand at 863.495 kb on + strand at 863.499 kb on + strand at 863.500 kb on - strand at 863.524 kb on + strand at 863.525 kb on - strand at 863.525 kb on - strand at 863.526 kb on + strand at 863.526 kb on + strand at 863.527 kb on - strand at 863.527 kb on - strand at 863.602 kb on + strand, within HMPREF1078_RS07205 at 863.602 kb on + strand, within HMPREF1078_RS07205 at 863.603 kb on - strand, within HMPREF1078_RS07205 at 863.603 kb on - strand, within HMPREF1078_RS07205 at 863.605 kb on - strand, within HMPREF1078_RS07205 at 863.606 kb on + strand, within HMPREF1078_RS07205 at 863.606 kb on + strand, within HMPREF1078_RS07205 at 863.607 kb on - strand, within HMPREF1078_RS07205 at 863.769 kb on + strand, within HMPREF1078_RS07205 at 863.810 kb on + strand, within HMPREF1078_RS07205 at 863.984 kb on + strand at 863.984 kb on + strand at 863.984 kb on + strand at 863.984 kb on + strand at 863.985 kb on - strand at 863.985 kb on - strand at 863.985 kb on - strand at 863.986 kb on + strand at 863.987 kb on - strand at 863.987 kb on - strand at 863.988 kb on + strand at 863.988 kb on + strand at 863.988 kb on + strand at 863.988 kb on + strand at 863.989 kb on - strand at 863.989 kb on - strand at 863.989 kb on - strand at 863.989 kb on - strand at 863.994 kb on - strand at 863.994 kb on - strand at 864.020 kb on - strand at 864.098 kb on + strand at 864.128 kb on + strand at 864.129 kb on - strand at 864.160 kb on + strand at 864.170 kb on - strand at 864.177 kb on + strand at 864.183 kb on + strand at 864.187 kb on + strand at 864.187 kb on + strand at 864.187 kb on + strand at 864.189 kb on + strand at 864.308 kb on + strand, within HMPREF1078_RS07210 at 864.369 kb on - strand, within HMPREF1078_RS07210 at 864.436 kb on + strand, within HMPREF1078_RS07210 at 864.439 kb on + strand, within HMPREF1078_RS07210 at 864.439 kb on + strand, within HMPREF1078_RS07210 at 864.524 kb on + strand, within HMPREF1078_RS07210 at 864.628 kb on + strand, within HMPREF1078_RS07210 at 864.628 kb on + strand, within HMPREF1078_RS07210 at 864.775 kb on + strand, within HMPREF1078_RS07210 at 864.776 kb on - strand, within HMPREF1078_RS07210 at 864.804 kb on + strand, within HMPREF1078_RS07210 at 864.896 kb on + strand, within HMPREF1078_RS07210 at 864.919 kb on + strand, within HMPREF1078_RS07210 at 864.920 kb on - strand, within HMPREF1078_RS07210 at 864.935 kb on - strand, within HMPREF1078_RS07210 at 864.963 kb on + strand, within HMPREF1078_RS07210 at 864.967 kb on + strand, within HMPREF1078_RS07210
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day4 remove 862,531 + +0.7 862,531 + -0.2 862,532 - -1.8 862,532 - +0.0 862,532 - -1.5 862,532 - -1.7 862,532 - +0.7 862,533 + -0.8 862,533 + -0.8 862,533 + -0.6 862,533 + +0.5 862,534 - +1.0 862,534 - -0.5 862,534 - +0.3 862,534 - +0.0 862,567 + -0.1 862,586 + +0.7 862,586 + +0.7 862,587 - -3.0 862,644 + -1.8 862,655 + HMPREF1078_RS07200 0.11 -0.5 862,655 + HMPREF1078_RS07200 0.11 +0.0 862,655 + HMPREF1078_RS07200 0.11 -1.3 862,655 + HMPREF1078_RS07200 0.11 -0.5 862,655 + HMPREF1078_RS07200 0.11 -2.0 862,655 + HMPREF1078_RS07200 0.11 -2.7 862,656 - HMPREF1078_RS07200 0.11 +1.6 862,656 - HMPREF1078_RS07200 0.11 -2.1 862,656 - HMPREF1078_RS07200 0.11 -3.0 862,659 + HMPREF1078_RS07200 0.12 -1.1 862,756 + HMPREF1078_RS07200 0.27 +1.0 862,788 - HMPREF1078_RS07200 0.32 -3.0 863,054 + HMPREF1078_RS07200 0.74 -3.0 863,054 + HMPREF1078_RS07200 0.74 +2.0 863,055 - HMPREF1078_RS07200 0.74 -1.5 863,115 - HMPREF1078_RS07200 0.83 -0.9 863,168 + -2.8 863,168 + -1.3 863,170 + -2.1 863,171 - -2.3 863,171 - -1.8 863,171 - -1.0 863,171 - -2.1 863,171 - +0.0 863,184 + -2.0 863,194 + -1.3 863,197 + +0.0 863,198 - +0.0 863,201 + +0.0 863,202 - -2.0 863,202 - +1.0 863,202 - -1.0 863,202 - -1.3 863,204 + -1.8 863,236 - -0.4 863,280 + -3.2 863,335 - -0.4 863,335 - +0.8 863,352 + +1.0 863,493 + +2.6 863,495 + -0.6 863,495 + -0.8 863,495 + -0.7 863,499 + +0.0 863,500 - -2.5 863,524 + -1.0 863,525 - -1.0 863,525 - -2.1 863,526 + -1.9 863,526 + -1.0 863,527 - -2.1 863,527 - +0.0 863,602 + HMPREF1078_RS07205 0.20 -1.0 863,602 + HMPREF1078_RS07205 0.20 -1.8 863,603 - HMPREF1078_RS07205 0.20 -1.8 863,603 - HMPREF1078_RS07205 0.20 -2.0 863,605 - HMPREF1078_RS07205 0.20 -2.9 863,606 + HMPREF1078_RS07205 0.20 -2.5 863,606 + HMPREF1078_RS07205 0.20 -3.3 863,607 - HMPREF1078_RS07205 0.20 -1.3 863,769 + HMPREF1078_RS07205 0.52 -2.7 863,810 + HMPREF1078_RS07205 0.59 -1.3 863,984 + +1.2 863,984 + +0.0 863,984 + -0.5 863,984 + +1.3 863,985 - -1.0 863,985 - -2.5 863,985 - +1.0 863,986 + -3.2 863,987 - +1.4 863,987 - -1.5 863,988 + +0.0 863,988 + +0.3 863,988 + -1.8 863,988 + -1.0 863,989 - +1.5 863,989 - -1.7 863,989 - -1.3 863,989 - +1.0 863,994 - -2.7 863,994 - -0.3 864,020 - +0.7 864,098 + -0.9 864,128 + -0.5 864,129 - -1.7 864,160 + -0.7 864,170 - -0.8 864,177 + -3.9 864,183 + +1.0 864,187 + +0.9 864,187 + +1.5 864,187 + -0.2 864,189 + -2.1 864,308 + HMPREF1078_RS07210 0.17 -1.5 864,369 - HMPREF1078_RS07210 0.22 -0.4 864,436 + HMPREF1078_RS07210 0.28 -1.9 864,439 + HMPREF1078_RS07210 0.28 +1.6 864,439 + HMPREF1078_RS07210 0.28 -0.4 864,524 + HMPREF1078_RS07210 0.35 -0.3 864,628 + HMPREF1078_RS07210 0.44 -0.6 864,628 + HMPREF1078_RS07210 0.44 -1.0 864,775 + HMPREF1078_RS07210 0.56 +0.6 864,776 - HMPREF1078_RS07210 0.56 -0.3 864,804 + HMPREF1078_RS07210 0.58 +0.1 864,896 + HMPREF1078_RS07210 0.66 -1.7 864,919 + HMPREF1078_RS07210 0.68 +0.5 864,920 - HMPREF1078_RS07210 0.68 -0.3 864,935 - HMPREF1078_RS07210 0.69 -0.2 864,963 + HMPREF1078_RS07210 0.72 -2.9 864,967 + HMPREF1078_RS07210 0.72 -0.7
Or see this region's nucleotide sequence