Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS07160

Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1078_RS07150 and HMPREF1078_RS07155 are separated by 6 nucleotidesHMPREF1078_RS07155 and HMPREF1078_RS07160 are separated by 52 nucleotidesHMPREF1078_RS07160 and HMPREF1078_RS07165 overlap by 1 nucleotides HMPREF1078_RS07150: HMPREF1078_RS07150 - HAMP domain-containing sensor histidine kinase, at 853,037 to 854,410 _RS07150 HMPREF1078_RS07155: HMPREF1078_RS07155 - response regulator transcription factor, at 854,417 to 855,100 _RS07155 HMPREF1078_RS07160: HMPREF1078_RS07160 - DUF4254 domain-containing protein, at 855,153 to 855,758 _RS07160 HMPREF1078_RS07165: HMPREF1078_RS07165 - glycosyltransferase family 9 protein, at 855,758 to 856,786 _RS07165 Position (kb) 855 856Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 854.160 kb on + strand, within HMPREF1078_RS07150at 854.199 kb on + strand, within HMPREF1078_RS07150at 854.200 kb on - strand, within HMPREF1078_RS07150at 854.218 kb on + strand, within HMPREF1078_RS07150at 854.219 kb on - strand, within HMPREF1078_RS07150at 854.316 kb on - strandat 854.319 kb on + strandat 854.319 kb on + strandat 854.320 kb on - strandat 854.320 kb on - strandat 854.389 kb on - strandat 854.416 kb on + strandat 854.501 kb on + strand, within HMPREF1078_RS07155at 854.501 kb on + strand, within HMPREF1078_RS07155at 854.502 kb on - strand, within HMPREF1078_RS07155at 854.502 kb on - strand, within HMPREF1078_RS07155at 854.502 kb on - strand, within HMPREF1078_RS07155at 854.513 kb on + strand, within HMPREF1078_RS07155at 854.580 kb on - strand, within HMPREF1078_RS07155at 854.587 kb on + strand, within HMPREF1078_RS07155at 854.814 kb on - strand, within HMPREF1078_RS07155at 854.840 kb on + strand, within HMPREF1078_RS07155at 854.958 kb on + strand, within HMPREF1078_RS07155at 854.958 kb on + strand, within HMPREF1078_RS07155at 854.967 kb on + strand, within HMPREF1078_RS07155at 854.984 kb on + strand, within HMPREF1078_RS07155at 854.985 kb on - strand, within HMPREF1078_RS07155at 854.985 kb on - strand, within HMPREF1078_RS07155at 855.020 kb on + strand, within HMPREF1078_RS07155at 855.083 kb on + strandat 855.083 kb on + strandat 855.084 kb on - strandat 855.085 kb on + strandat 855.112 kb on - strandat 855.112 kb on - strandat 855.153 kb on - strandat 855.182 kb on - strandat 855.204 kb on + strandat 855.204 kb on + strandat 855.205 kb on - strandat 855.205 kb on - strandat 855.205 kb on - strandat 855.209 kb on + strandat 855.223 kb on + strand, within HMPREF1078_RS07160at 855.223 kb on + strand, within HMPREF1078_RS07160at 855.223 kb on + strand, within HMPREF1078_RS07160at 855.224 kb on - strand, within HMPREF1078_RS07160at 855.224 kb on - strand, within HMPREF1078_RS07160at 855.236 kb on - strand, within HMPREF1078_RS07160at 855.239 kb on + strand, within HMPREF1078_RS07160at 855.240 kb on - strand, within HMPREF1078_RS07160at 855.240 kb on - strand, within HMPREF1078_RS07160at 855.240 kb on - strand, within HMPREF1078_RS07160at 855.260 kb on + strand, within HMPREF1078_RS07160at 855.261 kb on - strand, within HMPREF1078_RS07160at 855.262 kb on + strand, within HMPREF1078_RS07160at 855.262 kb on + strand, within HMPREF1078_RS07160at 855.270 kb on + strand, within HMPREF1078_RS07160at 855.271 kb on - strand, within HMPREF1078_RS07160at 855.277 kb on - strand, within HMPREF1078_RS07160at 855.311 kb on + strand, within HMPREF1078_RS07160at 855.311 kb on + strand, within HMPREF1078_RS07160at 855.312 kb on - strand, within HMPREF1078_RS07160at 855.321 kb on - strand, within HMPREF1078_RS07160at 855.398 kb on + strand, within HMPREF1078_RS07160at 855.398 kb on + strand, within HMPREF1078_RS07160at 855.398 kb on + strand, within HMPREF1078_RS07160at 855.416 kb on - strand, within HMPREF1078_RS07160at 855.442 kb on - strand, within HMPREF1078_RS07160at 855.443 kb on + strand, within HMPREF1078_RS07160at 855.534 kb on + strand, within HMPREF1078_RS07160at 855.540 kb on - strand, within HMPREF1078_RS07160at 855.634 kb on + strand, within HMPREF1078_RS07160at 855.635 kb on - strand, within HMPREF1078_RS07160at 855.680 kb on + strand, within HMPREF1078_RS07160at 855.681 kb on - strand, within HMPREF1078_RS07160at 855.684 kb on + strand, within HMPREF1078_RS07160at 855.686 kb on + strand, within HMPREF1078_RS07160at 855.687 kb on - strand, within HMPREF1078_RS07160at 855.687 kb on - strand, within HMPREF1078_RS07160at 855.714 kb on + strandat 855.715 kb on - strandat 855.715 kb on - strandat 855.715 kb on - strandat 855.717 kb on - strandat 855.744 kb on + strandat 855.774 kb on + strandat 855.775 kb on - strandat 855.777 kb on + strandat 855.778 kb on - strandat 855.825 kb on - strandat 855.841 kb on + strandat 855.841 kb on + strandat 855.842 kb on - strandat 855.911 kb on - strand, within HMPREF1078_RS07165at 855.929 kb on - strand, within HMPREF1078_RS07165at 856.024 kb on + strand, within HMPREF1078_RS07165at 856.045 kb on - strand, within HMPREF1078_RS07165at 856.072 kb on + strand, within HMPREF1078_RS07165at 856.111 kb on + strand, within HMPREF1078_RS07165at 856.112 kb on - strand, within HMPREF1078_RS07165at 856.145 kb on + strand, within HMPREF1078_RS07165at 856.165 kb on - strand, within HMPREF1078_RS07165at 856.205 kb on + strand, within HMPREF1078_RS07165at 856.206 kb on - strand, within HMPREF1078_RS07165at 856.206 kb on - strand, within HMPREF1078_RS07165at 856.207 kb on + strand, within HMPREF1078_RS07165at 856.219 kb on + strand, within HMPREF1078_RS07165at 856.230 kb on - strand, within HMPREF1078_RS07165at 856.279 kb on + strand, within HMPREF1078_RS07165at 856.389 kb on - strand, within HMPREF1078_RS07165at 856.389 kb on - strand, within HMPREF1078_RS07165at 856.391 kb on - strand, within HMPREF1078_RS07165at 856.419 kb on - strand, within HMPREF1078_RS07165at 856.419 kb on - strand, within HMPREF1078_RS07165at 856.476 kb on + strand, within HMPREF1078_RS07165at 856.477 kb on - strand, within HMPREF1078_RS07165at 856.480 kb on + strand, within HMPREF1078_RS07165at 856.481 kb on - strand, within HMPREF1078_RS07165at 856.484 kb on + strand, within HMPREF1078_RS07165at 856.484 kb on + strand, within HMPREF1078_RS07165at 856.484 kb on + strand, within HMPREF1078_RS07165at 856.530 kb on + strand, within HMPREF1078_RS07165at 856.530 kb on + strand, within HMPREF1078_RS07165at 856.530 kb on + strand, within HMPREF1078_RS07165at 856.530 kb on + strand, within HMPREF1078_RS07165at 856.531 kb on - strand, within HMPREF1078_RS07165at 856.531 kb on - strand, within HMPREF1078_RS07165at 856.531 kb on - strand, within HMPREF1078_RS07165at 856.552 kb on + strand, within HMPREF1078_RS07165at 856.553 kb on - strand, within HMPREF1078_RS07165at 856.572 kb on + strand, within HMPREF1078_RS07165at 856.576 kb on + strand, within HMPREF1078_RS07165at 856.576 kb on + strand, within HMPREF1078_RS07165at 856.614 kb on - strand, within HMPREF1078_RS07165at 856.626 kb on - strand, within HMPREF1078_RS07165at 856.631 kb on + strand, within HMPREF1078_RS07165at 856.689 kb on + strandat 856.729 kb on + strandat 856.729 kb on + strandat 856.730 kb on - strandat 856.730 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day4
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854,160 + HMPREF1078_RS07150 0.82 -2.1
854,199 + HMPREF1078_RS07150 0.85 +0.6
854,200 - HMPREF1078_RS07150 0.85 -0.2
854,218 + HMPREF1078_RS07150 0.86 +1.0
854,219 - HMPREF1078_RS07150 0.86 -3.3
854,316 - +1.8
854,319 + -0.2
854,319 + -0.2
854,320 - -0.3
854,320 - +1.0
854,389 - +0.8
854,416 + +0.7
854,501 + HMPREF1078_RS07155 0.12 -0.2
854,501 + HMPREF1078_RS07155 0.12 -0.1
854,502 - HMPREF1078_RS07155 0.12 -0.2
854,502 - HMPREF1078_RS07155 0.12 +0.4
854,502 - HMPREF1078_RS07155 0.12 +0.0
854,513 + HMPREF1078_RS07155 0.14 -0.7
854,580 - HMPREF1078_RS07155 0.24 +2.2
854,587 + HMPREF1078_RS07155 0.25 +0.0
854,814 - HMPREF1078_RS07155 0.58 -0.9
854,840 + HMPREF1078_RS07155 0.62 +1.0
854,958 + HMPREF1078_RS07155 0.79 -0.3
854,958 + HMPREF1078_RS07155 0.79 +0.7
854,967 + HMPREF1078_RS07155 0.80 -0.5
854,984 + HMPREF1078_RS07155 0.83 +0.0
854,985 - HMPREF1078_RS07155 0.83 -1.3
854,985 - HMPREF1078_RS07155 0.83 -3.2
855,020 + HMPREF1078_RS07155 0.88 +0.0
855,083 + -1.8
855,083 + -2.9
855,084 - -1.9
855,085 + +1.4
855,112 - -1.0
855,112 - -2.3
855,153 - -1.0
855,182 - -2.1
855,204 + -2.0
855,204 + -2.7
855,205 - -1.0
855,205 - -1.3
855,205 - -1.0
855,209 + -2.5
855,223 + HMPREF1078_RS07160 0.12 -1.8
855,223 + HMPREF1078_RS07160 0.12 -1.3
855,223 + HMPREF1078_RS07160 0.12 +0.0
855,224 - HMPREF1078_RS07160 0.12 -1.5
855,224 - HMPREF1078_RS07160 0.12 +0.0
855,236 - HMPREF1078_RS07160 0.14 -1.0
855,239 + HMPREF1078_RS07160 0.14 -2.1
855,240 - HMPREF1078_RS07160 0.14 +1.0
855,240 - HMPREF1078_RS07160 0.14 -0.5
855,240 - HMPREF1078_RS07160 0.14 -1.0
855,260 + HMPREF1078_RS07160 0.18 +0.0
855,261 - HMPREF1078_RS07160 0.18 -1.5
855,262 + HMPREF1078_RS07160 0.18 -1.8
855,262 + HMPREF1078_RS07160 0.18 -1.0
855,270 + HMPREF1078_RS07160 0.19 -1.8
855,271 - HMPREF1078_RS07160 0.19 -1.3
855,277 - HMPREF1078_RS07160 0.20 +0.0
855,311 + HMPREF1078_RS07160 0.26 +0.0
855,311 + HMPREF1078_RS07160 0.26 -1.3
855,312 - HMPREF1078_RS07160 0.26 +0.0
855,321 - HMPREF1078_RS07160 0.28 +0.0
855,398 + HMPREF1078_RS07160 0.40 -1.3
855,398 + HMPREF1078_RS07160 0.40 -1.3
855,398 + HMPREF1078_RS07160 0.40 -1.0
855,416 - HMPREF1078_RS07160 0.43 -1.8
855,442 - HMPREF1078_RS07160 0.48 -1.3
855,443 + HMPREF1078_RS07160 0.48 -1.3
855,534 + HMPREF1078_RS07160 0.63 -1.5
855,540 - HMPREF1078_RS07160 0.64 +1.0
855,634 + HMPREF1078_RS07160 0.79 -1.3
855,635 - HMPREF1078_RS07160 0.80 -1.5
855,680 + HMPREF1078_RS07160 0.87 -1.8
855,681 - HMPREF1078_RS07160 0.87 +0.0
855,684 + HMPREF1078_RS07160 0.88 -0.5
855,686 + HMPREF1078_RS07160 0.88 -1.8
855,687 - HMPREF1078_RS07160 0.88 -1.0
855,687 - HMPREF1078_RS07160 0.88 -1.5
855,714 + -1.0
855,715 - +1.0
855,715 - -2.5
855,715 - -0.5
855,717 - -2.3
855,744 + -1.3
855,774 + -1.0
855,775 - +1.0
855,777 + +1.0
855,778 - -0.5
855,825 - -1.0
855,841 + +0.0
855,841 + -1.3
855,842 - -1.5
855,911 - HMPREF1078_RS07165 0.15 -1.3
855,929 - HMPREF1078_RS07165 0.17 -1.0
856,024 + HMPREF1078_RS07165 0.26 +1.0
856,045 - HMPREF1078_RS07165 0.28 -1.3
856,072 + HMPREF1078_RS07165 0.31 +0.0
856,111 + HMPREF1078_RS07165 0.34 -1.3
856,112 - HMPREF1078_RS07165 0.34 +0.0
856,145 + HMPREF1078_RS07165 0.38 -1.3
856,165 - HMPREF1078_RS07165 0.40 -1.5
856,205 + HMPREF1078_RS07165 0.43 -0.5
856,206 - HMPREF1078_RS07165 0.44 -0.5
856,206 - HMPREF1078_RS07165 0.44 +1.0
856,207 + HMPREF1078_RS07165 0.44 -1.0
856,219 + HMPREF1078_RS07165 0.45 +1.0
856,230 - HMPREF1078_RS07165 0.46 -2.0
856,279 + HMPREF1078_RS07165 0.51 -2.5
856,389 - HMPREF1078_RS07165 0.61 -1.0
856,389 - HMPREF1078_RS07165 0.61 +1.0
856,391 - HMPREF1078_RS07165 0.62 +0.0
856,419 - HMPREF1078_RS07165 0.64 -1.3
856,419 - HMPREF1078_RS07165 0.64 -1.5
856,476 + HMPREF1078_RS07165 0.70 +0.0
856,477 - HMPREF1078_RS07165 0.70 -1.0
856,480 + HMPREF1078_RS07165 0.70 -1.0
856,481 - HMPREF1078_RS07165 0.70 -1.0
856,484 + HMPREF1078_RS07165 0.71 -2.3
856,484 + HMPREF1078_RS07165 0.71 -0.5
856,484 + HMPREF1078_RS07165 0.71 -2.5
856,530 + HMPREF1078_RS07165 0.75 -2.1
856,530 + HMPREF1078_RS07165 0.75 -1.3
856,530 + HMPREF1078_RS07165 0.75 +1.0
856,530 + HMPREF1078_RS07165 0.75 -2.4
856,531 - HMPREF1078_RS07165 0.75 -1.3
856,531 - HMPREF1078_RS07165 0.75 -1.0
856,531 - HMPREF1078_RS07165 0.75 -2.3
856,552 + HMPREF1078_RS07165 0.77 -1.8
856,553 - HMPREF1078_RS07165 0.77 -2.3
856,572 + HMPREF1078_RS07165 0.79 +0.0
856,576 + HMPREF1078_RS07165 0.79 -2.0
856,576 + HMPREF1078_RS07165 0.79 -1.0
856,614 - HMPREF1078_RS07165 0.83 -2.5
856,626 - HMPREF1078_RS07165 0.84 -2.0
856,631 + HMPREF1078_RS07165 0.85 -1.3
856,689 + -1.8
856,729 + +1.0
856,729 + -0.5
856,730 - -1.5
856,730 - +0.0

Or see this region's nucleotide sequence