Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS06740

Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1078_RS06735 and HMPREF1078_RS06740 are separated by 152 nucleotidesHMPREF1078_RS06740 and HMPREF1078_RS06745 overlap by 4 nucleotidesHMPREF1078_RS06745 and HMPREF1078_RS06750 overlap by 11 nucleotides HMPREF1078_RS06735: HMPREF1078_RS06735 - Gfo/Idh/MocA family oxidoreductase, at 751,186 to 752,622 _RS06735 HMPREF1078_RS06740: HMPREF1078_RS06740 - DUF4271 domain-containing protein, at 752,775 to 753,503 _RS06740 HMPREF1078_RS06745: HMPREF1078_RS06745 - uroporphyrinogen-III synthase, at 753,500 to 754,267 _RS06745 HMPREF1078_RS06750: HMPREF1078_RS06750 - ribonuclease P protein component, at 754,257 to 754,643 _RS06750 Position (kb) 752 753 754Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4at 751.776 kb on - strand, within HMPREF1078_RS06735at 751.810 kb on - strand, within HMPREF1078_RS06735at 751.906 kb on + strand, within HMPREF1078_RS06735at 751.907 kb on - strand, within HMPREF1078_RS06735at 751.918 kb on + strand, within HMPREF1078_RS06735at 751.946 kb on - strand, within HMPREF1078_RS06735at 752.036 kb on + strand, within HMPREF1078_RS06735at 752.062 kb on - strand, within HMPREF1078_RS06735at 752.136 kb on + strand, within HMPREF1078_RS06735at 752.139 kb on + strand, within HMPREF1078_RS06735at 752.160 kb on + strand, within HMPREF1078_RS06735at 752.163 kb on + strand, within HMPREF1078_RS06735at 752.163 kb on + strand, within HMPREF1078_RS06735at 752.163 kb on + strand, within HMPREF1078_RS06735at 752.185 kb on + strand, within HMPREF1078_RS06735at 752.185 kb on + strand, within HMPREF1078_RS06735at 752.311 kb on - strand, within HMPREF1078_RS06735at 752.395 kb on + strand, within HMPREF1078_RS06735at 752.408 kb on + strand, within HMPREF1078_RS06735at 752.452 kb on - strand, within HMPREF1078_RS06735at 752.609 kb on - strandat 752.609 kb on - strandat 752.611 kb on + strandat 752.611 kb on + strandat 752.611 kb on + strandat 752.612 kb on - strandat 752.616 kb on + strandat 752.633 kb on - strandat 752.646 kb on - strandat 752.724 kb on - strandat 752.747 kb on - strandat 752.760 kb on + strandat 752.760 kb on + strandat 752.782 kb on + strandat 752.783 kb on - strandat 752.783 kb on - strandat 752.793 kb on + strandat 752.794 kb on - strandat 752.794 kb on - strandat 752.794 kb on - strandat 752.864 kb on + strand, within HMPREF1078_RS06740at 752.954 kb on - strand, within HMPREF1078_RS06740at 752.965 kb on + strand, within HMPREF1078_RS06740at 752.965 kb on + strand, within HMPREF1078_RS06740at 753.056 kb on - strand, within HMPREF1078_RS06740at 753.057 kb on + strand, within HMPREF1078_RS06740at 753.094 kb on + strand, within HMPREF1078_RS06740at 753.191 kb on + strand, within HMPREF1078_RS06740at 753.196 kb on - strand, within HMPREF1078_RS06740at 753.197 kb on + strand, within HMPREF1078_RS06740at 753.216 kb on + strand, within HMPREF1078_RS06740at 753.224 kb on + strand, within HMPREF1078_RS06740at 753.225 kb on - strand, within HMPREF1078_RS06740at 753.225 kb on - strand, within HMPREF1078_RS06740at 753.225 kb on - strand, within HMPREF1078_RS06740at 753.288 kb on + strand, within HMPREF1078_RS06740at 753.288 kb on + strand, within HMPREF1078_RS06740at 753.288 kb on + strand, within HMPREF1078_RS06740at 753.288 kb on + strand, within HMPREF1078_RS06740at 753.289 kb on - strand, within HMPREF1078_RS06740at 753.292 kb on + strand, within HMPREF1078_RS06740at 753.292 kb on + strand, within HMPREF1078_RS06740at 753.292 kb on + strand, within HMPREF1078_RS06740at 753.292 kb on + strand, within HMPREF1078_RS06740at 753.293 kb on - strand, within HMPREF1078_RS06740at 753.293 kb on - strand, within HMPREF1078_RS06740at 753.296 kb on + strand, within HMPREF1078_RS06740at 753.296 kb on + strand, within HMPREF1078_RS06740at 753.297 kb on - strand, within HMPREF1078_RS06740at 753.298 kb on + strand, within HMPREF1078_RS06740at 753.317 kb on + strand, within HMPREF1078_RS06740at 753.317 kb on + strand, within HMPREF1078_RS06740at 753.324 kb on + strand, within HMPREF1078_RS06740at 753.362 kb on - strand, within HMPREF1078_RS06740at 753.396 kb on + strand, within HMPREF1078_RS06740at 753.396 kb on + strand, within HMPREF1078_RS06740at 753.400 kb on + strand, within HMPREF1078_RS06740at 753.400 kb on + strand, within HMPREF1078_RS06740at 753.400 kb on + strand, within HMPREF1078_RS06740at 753.400 kb on + strand, within HMPREF1078_RS06740at 753.400 kb on + strand, within HMPREF1078_RS06740at 753.400 kb on + strand, within HMPREF1078_RS06740at 753.408 kb on + strand, within HMPREF1078_RS06740at 753.447 kb on + strandat 753.455 kb on + strandat 753.462 kb on + strandat 753.462 kb on + strandat 753.462 kb on + strandat 753.578 kb on + strand, within HMPREF1078_RS06745at 753.610 kb on + strand, within HMPREF1078_RS06745at 753.615 kb on + strand, within HMPREF1078_RS06745at 753.615 kb on + strand, within HMPREF1078_RS06745at 753.631 kb on + strand, within HMPREF1078_RS06745at 753.670 kb on + strand, within HMPREF1078_RS06745at 753.761 kb on + strand, within HMPREF1078_RS06745at 753.803 kb on + strand, within HMPREF1078_RS06745at 753.805 kb on + strand, within HMPREF1078_RS06745at 753.812 kb on + strand, within HMPREF1078_RS06745at 753.812 kb on + strand, within HMPREF1078_RS06745at 753.823 kb on + strand, within HMPREF1078_RS06745at 753.823 kb on + strand, within HMPREF1078_RS06745at 753.865 kb on + strand, within HMPREF1078_RS06745at 753.896 kb on + strand, within HMPREF1078_RS06745at 753.922 kb on + strand, within HMPREF1078_RS06745at 753.922 kb on + strand, within HMPREF1078_RS06745at 753.922 kb on + strand, within HMPREF1078_RS06745at 753.923 kb on - strand, within HMPREF1078_RS06745at 753.940 kb on + strand, within HMPREF1078_RS06745at 753.940 kb on + strand, within HMPREF1078_RS06745at 753.979 kb on + strand, within HMPREF1078_RS06745at 753.979 kb on + strand, within HMPREF1078_RS06745at 753.979 kb on + strand, within HMPREF1078_RS06745at 753.983 kb on + strand, within HMPREF1078_RS06745at 754.009 kb on + strand, within HMPREF1078_RS06745at 754.033 kb on + strand, within HMPREF1078_RS06745at 754.033 kb on + strand, within HMPREF1078_RS06745at 754.033 kb on + strand, within HMPREF1078_RS06745at 754.105 kb on + strand, within HMPREF1078_RS06745at 754.105 kb on + strand, within HMPREF1078_RS06745at 754.105 kb on + strand, within HMPREF1078_RS06745at 754.107 kb on + strand, within HMPREF1078_RS06745at 754.223 kb on + strandat 754.243 kb on + strandat 754.246 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day4
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751,776 - HMPREF1078_RS06735 0.41 -1.2
751,810 - HMPREF1078_RS06735 0.43 -1.3
751,906 + HMPREF1078_RS06735 0.50 +0.2
751,907 - HMPREF1078_RS06735 0.50 -1.8
751,918 + HMPREF1078_RS06735 0.51 -1.0
751,946 - HMPREF1078_RS06735 0.53 +2.0
752,036 + HMPREF1078_RS06735 0.59 -1.3
752,062 - HMPREF1078_RS06735 0.61 +0.5
752,136 + HMPREF1078_RS06735 0.66 +0.7
752,139 + HMPREF1078_RS06735 0.66 +3.8
752,160 + HMPREF1078_RS06735 0.68 +0.0
752,163 + HMPREF1078_RS06735 0.68 -0.3
752,163 + HMPREF1078_RS06735 0.68 +1.0
752,163 + HMPREF1078_RS06735 0.68 -0.5
752,185 + HMPREF1078_RS06735 0.70 -1.0
752,185 + HMPREF1078_RS06735 0.70 -0.0
752,311 - HMPREF1078_RS06735 0.78 +3.3
752,395 + HMPREF1078_RS06735 0.84 -1.3
752,408 + HMPREF1078_RS06735 0.85 -0.2
752,452 - HMPREF1078_RS06735 0.88 +0.3
752,609 - +1.2
752,609 - +0.0
752,611 + -0.9
752,611 + -2.3
752,611 + +1.4
752,612 - -0.8
752,616 + -1.0
752,633 - -1.8
752,646 - -0.6
752,724 - -3.4
752,747 - -0.3
752,760 + -0.5
752,760 + +0.6
752,782 + -3.5
752,783 - -4.1
752,783 - -2.9
752,793 + -4.5
752,794 - -3.0
752,794 - -4.4
752,794 - -2.9
752,864 + HMPREF1078_RS06740 0.12 -3.5
752,954 - HMPREF1078_RS06740 0.25 -0.5
752,965 + HMPREF1078_RS06740 0.26 -2.9
752,965 + HMPREF1078_RS06740 0.26 -2.1
753,056 - HMPREF1078_RS06740 0.39 -1.5
753,057 + HMPREF1078_RS06740 0.39 -3.5
753,094 + HMPREF1078_RS06740 0.44 -4.2
753,191 + HMPREF1078_RS06740 0.57 -3.1
753,196 - HMPREF1078_RS06740 0.58 -2.3
753,197 + HMPREF1078_RS06740 0.58 -1.0
753,216 + HMPREF1078_RS06740 0.60 -3.7
753,224 + HMPREF1078_RS06740 0.62 -2.8
753,225 - HMPREF1078_RS06740 0.62 -4.4
753,225 - HMPREF1078_RS06740 0.62 -3.4
753,225 - HMPREF1078_RS06740 0.62 +0.0
753,288 + HMPREF1078_RS06740 0.70 -3.2
753,288 + HMPREF1078_RS06740 0.70 -3.1
753,288 + HMPREF1078_RS06740 0.70 -2.1
753,288 + HMPREF1078_RS06740 0.70 -4.5
753,289 - HMPREF1078_RS06740 0.71 -4.0
753,292 + HMPREF1078_RS06740 0.71 -4.5
753,292 + HMPREF1078_RS06740 0.71 -3.0
753,292 + HMPREF1078_RS06740 0.71 -2.8
753,292 + HMPREF1078_RS06740 0.71 -3.9
753,293 - HMPREF1078_RS06740 0.71 -4.0
753,293 - HMPREF1078_RS06740 0.71 -4.4
753,296 + HMPREF1078_RS06740 0.71 -1.3
753,296 + HMPREF1078_RS06740 0.71 -3.0
753,297 - HMPREF1078_RS06740 0.72 -3.1
753,298 + HMPREF1078_RS06740 0.72 -4.7
753,317 + HMPREF1078_RS06740 0.74 -4.2
753,317 + HMPREF1078_RS06740 0.74 -2.0
753,324 + HMPREF1078_RS06740 0.75 -2.1
753,362 - HMPREF1078_RS06740 0.81 +1.0
753,396 + HMPREF1078_RS06740 0.85 -5.7
753,396 + HMPREF1078_RS06740 0.85 -1.0
753,400 + HMPREF1078_RS06740 0.86 -5.5
753,400 + HMPREF1078_RS06740 0.86 -5.1
753,400 + HMPREF1078_RS06740 0.86 -3.1
753,400 + HMPREF1078_RS06740 0.86 -5.5
753,400 + HMPREF1078_RS06740 0.86 -4.4
753,400 + HMPREF1078_RS06740 0.86 -2.3
753,408 + HMPREF1078_RS06740 0.87 -3.7
753,447 + +1.0
753,455 + -4.8
753,462 + -1.2
753,462 + -2.8
753,462 + -2.0
753,578 + HMPREF1078_RS06745 0.10 +0.0
753,610 + HMPREF1078_RS06745 0.14 -1.5
753,615 + HMPREF1078_RS06745 0.15 -2.1
753,615 + HMPREF1078_RS06745 0.15 +0.0
753,631 + HMPREF1078_RS06745 0.17 -1.3
753,670 + HMPREF1078_RS06745 0.22 -0.5
753,761 + HMPREF1078_RS06745 0.34 +0.0
753,803 + HMPREF1078_RS06745 0.39 +1.0
753,805 + HMPREF1078_RS06745 0.40 +1.0
753,812 + HMPREF1078_RS06745 0.41 -3.4
753,812 + HMPREF1078_RS06745 0.41 +0.0
753,823 + HMPREF1078_RS06745 0.42 -2.0
753,823 + HMPREF1078_RS06745 0.42 -2.5
753,865 + HMPREF1078_RS06745 0.48 +0.0
753,896 + HMPREF1078_RS06745 0.52 +0.0
753,922 + HMPREF1078_RS06745 0.55 -0.5
753,922 + HMPREF1078_RS06745 0.55 -1.0
753,922 + HMPREF1078_RS06745 0.55 -1.5
753,923 - HMPREF1078_RS06745 0.55 -2.0
753,940 + HMPREF1078_RS06745 0.57 -1.0
753,940 + HMPREF1078_RS06745 0.57 -2.3
753,979 + HMPREF1078_RS06745 0.62 -1.5
753,979 + HMPREF1078_RS06745 0.62 -1.5
753,979 + HMPREF1078_RS06745 0.62 -2.5
753,983 + HMPREF1078_RS06745 0.63 -1.3
754,009 + HMPREF1078_RS06745 0.66 -1.3
754,033 + HMPREF1078_RS06745 0.69 +0.0
754,033 + HMPREF1078_RS06745 0.69 -1.5
754,033 + HMPREF1078_RS06745 0.69 -2.3
754,105 + HMPREF1078_RS06745 0.79 +0.0
754,105 + HMPREF1078_RS06745 0.79 +1.0
754,105 + HMPREF1078_RS06745 0.79 -1.8
754,107 + HMPREF1078_RS06745 0.79 -1.5
754,223 + -2.5
754,243 + +0.2
754,246 + -1.3

Or see this region's nucleotide sequence