Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS06530

Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1078_RS19805 and HMPREF1078_RS06530 are separated by 72 nucleotidesHMPREF1078_RS06530 and HMPREF1078_RS06535 are separated by 86 nucleotides HMPREF1078_RS19805: HMPREF1078_RS19805 - T9SS type A sorting domain-containing protein, at 688,493 to 689,848 _RS19805 HMPREF1078_RS06530: HMPREF1078_RS06530 - radical SAM protein, at 689,921 to 690,700 _RS06530 HMPREF1078_RS06535: HMPREF1078_RS06535 - helix-hairpin-helix domain-containing protein, at 690,787 to 692,724 _RS06535 Position (kb) 689 690 691Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 688.953 kb on + strand, within HMPREF1078_RS19805at 688.974 kb on - strand, within HMPREF1078_RS19805at 688.974 kb on - strand, within HMPREF1078_RS19805at 688.974 kb on - strand, within HMPREF1078_RS19805at 688.989 kb on + strand, within HMPREF1078_RS19805at 688.989 kb on + strand, within HMPREF1078_RS19805at 689.028 kb on + strand, within HMPREF1078_RS19805at 689.120 kb on - strand, within HMPREF1078_RS19805at 689.213 kb on + strand, within HMPREF1078_RS19805at 689.214 kb on - strand, within HMPREF1078_RS19805at 689.214 kb on - strand, within HMPREF1078_RS19805at 689.219 kb on + strand, within HMPREF1078_RS19805at 689.300 kb on - strand, within HMPREF1078_RS19805at 689.301 kb on + strand, within HMPREF1078_RS19805at 689.301 kb on + strand, within HMPREF1078_RS19805at 689.301 kb on + strand, within HMPREF1078_RS19805at 689.301 kb on + strand, within HMPREF1078_RS19805at 689.301 kb on + strand, within HMPREF1078_RS19805at 689.302 kb on - strand, within HMPREF1078_RS19805at 689.302 kb on - strand, within HMPREF1078_RS19805at 689.309 kb on - strand, within HMPREF1078_RS19805at 689.311 kb on - strand, within HMPREF1078_RS19805at 689.344 kb on + strand, within HMPREF1078_RS19805at 689.345 kb on - strand, within HMPREF1078_RS19805at 689.430 kb on + strand, within HMPREF1078_RS19805at 689.431 kb on - strand, within HMPREF1078_RS19805at 689.438 kb on + strand, within HMPREF1078_RS19805at 689.439 kb on - strand, within HMPREF1078_RS19805at 689.439 kb on - strand, within HMPREF1078_RS19805at 689.452 kb on + strand, within HMPREF1078_RS19805at 689.452 kb on + strand, within HMPREF1078_RS19805at 689.498 kb on + strand, within HMPREF1078_RS19805at 689.498 kb on + strand, within HMPREF1078_RS19805at 689.500 kb on + strand, within HMPREF1078_RS19805at 689.501 kb on - strand, within HMPREF1078_RS19805at 689.501 kb on - strand, within HMPREF1078_RS19805at 689.501 kb on - strand, within HMPREF1078_RS19805at 689.503 kb on - strand, within HMPREF1078_RS19805at 689.518 kb on + strand, within HMPREF1078_RS19805at 689.524 kb on + strand, within HMPREF1078_RS19805at 689.524 kb on + strand, within HMPREF1078_RS19805at 689.528 kb on - strand, within HMPREF1078_RS19805at 689.551 kb on - strand, within HMPREF1078_RS19805at 689.551 kb on - strand, within HMPREF1078_RS19805at 689.551 kb on - strand, within HMPREF1078_RS19805at 689.595 kb on + strand, within HMPREF1078_RS19805at 689.601 kb on + strand, within HMPREF1078_RS19805at 689.654 kb on - strand, within HMPREF1078_RS19805at 689.697 kb on + strand, within HMPREF1078_RS19805at 689.698 kb on - strand, within HMPREF1078_RS19805at 689.787 kb on - strandat 689.803 kb on + strandat 689.804 kb on - strandat 689.819 kb on - strandat 689.853 kb on + strandat 689.887 kb on + strandat 689.888 kb on - strandat 689.971 kb on + strandat 689.977 kb on - strandat 690.044 kb on - strand, within HMPREF1078_RS06530at 690.044 kb on - strand, within HMPREF1078_RS06530at 690.232 kb on - strand, within HMPREF1078_RS06530at 690.275 kb on + strand, within HMPREF1078_RS06530at 690.277 kb on + strand, within HMPREF1078_RS06530at 690.277 kb on + strand, within HMPREF1078_RS06530at 690.278 kb on - strand, within HMPREF1078_RS06530at 690.278 kb on - strand, within HMPREF1078_RS06530at 690.278 kb on - strand, within HMPREF1078_RS06530at 690.280 kb on + strand, within HMPREF1078_RS06530at 690.280 kb on + strand, within HMPREF1078_RS06530at 690.280 kb on + strand, within HMPREF1078_RS06530at 690.280 kb on + strand, within HMPREF1078_RS06530at 690.319 kb on + strand, within HMPREF1078_RS06530at 690.391 kb on + strand, within HMPREF1078_RS06530at 690.391 kb on + strand, within HMPREF1078_RS06530at 690.392 kb on - strand, within HMPREF1078_RS06530at 690.427 kb on + strand, within HMPREF1078_RS06530at 690.428 kb on - strand, within HMPREF1078_RS06530at 690.455 kb on + strand, within HMPREF1078_RS06530at 690.455 kb on + strand, within HMPREF1078_RS06530at 690.456 kb on - strand, within HMPREF1078_RS06530at 690.456 kb on - strand, within HMPREF1078_RS06530at 690.496 kb on + strand, within HMPREF1078_RS06530at 690.613 kb on + strand, within HMPREF1078_RS06530at 690.629 kb on - strandat 690.644 kb on + strandat 690.656 kb on - strandat 690.675 kb on - strandat 690.703 kb on + strandat 690.703 kb on + strandat 690.704 kb on - strandat 690.749 kb on + strandat 690.810 kb on + strandat 690.810 kb on + strandat 690.811 kb on - strandat 690.812 kb on + strandat 690.812 kb on + strandat 690.812 kb on + strandat 690.813 kb on - strandat 690.813 kb on - strandat 690.813 kb on - strandat 690.813 kb on - strandat 690.813 kb on - strandat 690.813 kb on - strandat 690.813 kb on - strandat 690.814 kb on + strandat 690.815 kb on - strandat 690.815 kb on - strandat 690.816 kb on + strandat 690.817 kb on - strandat 690.878 kb on + strandat 690.879 kb on - strandat 690.879 kb on - strandat 690.879 kb on - strandat 690.881 kb on + strandat 690.882 kb on - strandat 690.888 kb on - strandat 690.893 kb on - strandat 690.979 kb on - strandat 691.007 kb on + strand, within HMPREF1078_RS06535at 691.008 kb on - strand, within HMPREF1078_RS06535at 691.016 kb on - strand, within HMPREF1078_RS06535at 691.017 kb on + strand, within HMPREF1078_RS06535at 691.028 kb on + strand, within HMPREF1078_RS06535at 691.032 kb on + strand, within HMPREF1078_RS06535at 691.033 kb on - strand, within HMPREF1078_RS06535at 691.097 kb on - strand, within HMPREF1078_RS06535at 691.143 kb on + strand, within HMPREF1078_RS06535at 691.143 kb on + strand, within HMPREF1078_RS06535at 691.194 kb on + strand, within HMPREF1078_RS06535at 691.195 kb on - strand, within HMPREF1078_RS06535at 691.195 kb on - strand, within HMPREF1078_RS06535at 691.195 kb on - strand, within HMPREF1078_RS06535at 691.196 kb on + strand, within HMPREF1078_RS06535at 691.196 kb on + strand, within HMPREF1078_RS06535at 691.198 kb on + strand, within HMPREF1078_RS06535at 691.199 kb on - strand, within HMPREF1078_RS06535at 691.229 kb on + strand, within HMPREF1078_RS06535at 691.229 kb on + strand, within HMPREF1078_RS06535at 691.229 kb on + strand, within HMPREF1078_RS06535at 691.272 kb on - strand, within HMPREF1078_RS06535at 691.272 kb on - strand, within HMPREF1078_RS06535at 691.272 kb on - strand, within HMPREF1078_RS06535at 691.272 kb on - strand, within HMPREF1078_RS06535at 691.272 kb on - strand, within HMPREF1078_RS06535at 691.273 kb on + strand, within HMPREF1078_RS06535at 691.274 kb on - strand, within HMPREF1078_RS06535at 691.296 kb on + strand, within HMPREF1078_RS06535at 691.314 kb on + strand, within HMPREF1078_RS06535at 691.315 kb on - strand, within HMPREF1078_RS06535at 691.316 kb on + strand, within HMPREF1078_RS06535at 691.316 kb on + strand, within HMPREF1078_RS06535at 691.317 kb on - strand, within HMPREF1078_RS06535at 691.317 kb on - strand, within HMPREF1078_RS06535at 691.372 kb on + strand, within HMPREF1078_RS06535at 691.426 kb on + strand, within HMPREF1078_RS06535at 691.427 kb on - strand, within HMPREF1078_RS06535at 691.427 kb on - strand, within HMPREF1078_RS06535at 691.428 kb on + strand, within HMPREF1078_RS06535at 691.428 kb on + strand, within HMPREF1078_RS06535at 691.429 kb on - strand, within HMPREF1078_RS06535at 691.430 kb on + strand, within HMPREF1078_RS06535at 691.431 kb on - strand, within HMPREF1078_RS06535at 691.431 kb on - strand, within HMPREF1078_RS06535at 691.505 kb on + strand, within HMPREF1078_RS06535at 691.505 kb on + strand, within HMPREF1078_RS06535at 691.514 kb on + strand, within HMPREF1078_RS06535at 691.515 kb on - strand, within HMPREF1078_RS06535at 691.650 kb on + strand, within HMPREF1078_RS06535at 691.652 kb on + strand, within HMPREF1078_RS06535at 691.687 kb on - strand, within HMPREF1078_RS06535

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day4
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688,953 + HMPREF1078_RS19805 0.34 -1.8
688,974 - HMPREF1078_RS19805 0.35 +1.4
688,974 - HMPREF1078_RS19805 0.35 -0.1
688,974 - HMPREF1078_RS19805 0.35 +1.0
688,989 + HMPREF1078_RS19805 0.37 -1.2
688,989 + HMPREF1078_RS19805 0.37 +0.2
689,028 + HMPREF1078_RS19805 0.39 -1.0
689,120 - HMPREF1078_RS19805 0.46 -0.5
689,213 + HMPREF1078_RS19805 0.53 -0.3
689,214 - HMPREF1078_RS19805 0.53 -0.6
689,214 - HMPREF1078_RS19805 0.53 +0.6
689,219 + HMPREF1078_RS19805 0.54 -1.1
689,300 - HMPREF1078_RS19805 0.60 -1.5
689,301 + HMPREF1078_RS19805 0.60 +0.0
689,301 + HMPREF1078_RS19805 0.60 +2.4
689,301 + HMPREF1078_RS19805 0.60 +1.0
689,301 + HMPREF1078_RS19805 0.60 -0.7
689,301 + HMPREF1078_RS19805 0.60 -0.1
689,302 - HMPREF1078_RS19805 0.60 +0.0
689,302 - HMPREF1078_RS19805 0.60 +1.4
689,309 - HMPREF1078_RS19805 0.60 -1.5
689,311 - HMPREF1078_RS19805 0.60 -1.0
689,344 + HMPREF1078_RS19805 0.63 -1.8
689,345 - HMPREF1078_RS19805 0.63 +0.0
689,430 + HMPREF1078_RS19805 0.69 +0.0
689,431 - HMPREF1078_RS19805 0.69 +1.3
689,438 + HMPREF1078_RS19805 0.70 -1.4
689,439 - HMPREF1078_RS19805 0.70 -1.0
689,439 - HMPREF1078_RS19805 0.70 +1.2
689,452 + HMPREF1078_RS19805 0.71 +0.3
689,452 + HMPREF1078_RS19805 0.71 -1.3
689,498 + HMPREF1078_RS19805 0.74 +0.7
689,498 + HMPREF1078_RS19805 0.74 -2.3
689,500 + HMPREF1078_RS19805 0.74 +1.9
689,501 - HMPREF1078_RS19805 0.74 -1.8
689,501 - HMPREF1078_RS19805 0.74 +2.8
689,501 - HMPREF1078_RS19805 0.74 -0.8
689,503 - HMPREF1078_RS19805 0.74 +1.5
689,518 + HMPREF1078_RS19805 0.76 +2.0
689,524 + HMPREF1078_RS19805 0.76 -0.8
689,524 + HMPREF1078_RS19805 0.76 -0.2
689,528 - HMPREF1078_RS19805 0.76 +0.0
689,551 - HMPREF1078_RS19805 0.78 +2.9
689,551 - HMPREF1078_RS19805 0.78 +0.0
689,551 - HMPREF1078_RS19805 0.78 +0.6
689,595 + HMPREF1078_RS19805 0.81 +1.2
689,601 + HMPREF1078_RS19805 0.82 +0.1
689,654 - HMPREF1078_RS19805 0.86 -0.4
689,697 + HMPREF1078_RS19805 0.89 +0.7
689,698 - HMPREF1078_RS19805 0.89 -0.1
689,787 - -3.4
689,803 + -0.2
689,804 - +0.6
689,819 - -2.0
689,853 + +0.7
689,887 + -1.5
689,888 - +0.4
689,971 + -1.0
689,977 - +0.0
690,044 - HMPREF1078_RS06530 0.16 -2.3
690,044 - HMPREF1078_RS06530 0.16 -2.5
690,232 - HMPREF1078_RS06530 0.40 -2.0
690,275 + HMPREF1078_RS06530 0.45 -1.3
690,277 + HMPREF1078_RS06530 0.46 -1.3
690,277 + HMPREF1078_RS06530 0.46 -0.5
690,278 - HMPREF1078_RS06530 0.46 -3.0
690,278 - HMPREF1078_RS06530 0.46 -2.7
690,278 - HMPREF1078_RS06530 0.46 -1.3
690,280 + HMPREF1078_RS06530 0.46 -0.5
690,280 + HMPREF1078_RS06530 0.46 -1.3
690,280 + HMPREF1078_RS06530 0.46 -0.5
690,280 + HMPREF1078_RS06530 0.46 -2.3
690,319 + HMPREF1078_RS06530 0.51 -2.7
690,391 + HMPREF1078_RS06530 0.60 -2.4
690,391 + HMPREF1078_RS06530 0.60 -3.0
690,392 - HMPREF1078_RS06530 0.60 -2.1
690,427 + HMPREF1078_RS06530 0.65 -1.7
690,428 - HMPREF1078_RS06530 0.65 -2.7
690,455 + HMPREF1078_RS06530 0.68 -1.3
690,455 + HMPREF1078_RS06530 0.68 -0.5
690,456 - HMPREF1078_RS06530 0.69 -1.5
690,456 - HMPREF1078_RS06530 0.69 -1.0
690,496 + HMPREF1078_RS06530 0.74 -2.0
690,613 + HMPREF1078_RS06530 0.89 -2.5
690,629 - +0.0
690,644 + -1.8
690,656 - -0.5
690,675 - -2.0
690,703 + -2.1
690,703 + -1.8
690,704 - -0.3
690,749 + -0.6
690,810 + -0.5
690,810 + +0.3
690,811 - -0.7
690,812 + -0.7
690,812 + -0.5
690,812 + -2.1
690,813 - +1.2
690,813 - +1.6
690,813 - +1.2
690,813 - +2.6
690,813 - -0.5
690,813 - -2.4
690,813 - +2.2
690,814 + +0.4
690,815 - -1.5
690,815 - -0.2
690,816 + +0.7
690,817 - +1.2
690,878 + +1.0
690,879 - +0.6
690,879 - -1.1
690,879 - -1.2
690,881 + -1.3
690,882 - -0.6
690,888 - +1.0
690,893 - -3.6
690,979 - -2.3
691,007 + HMPREF1078_RS06535 0.11 +0.0
691,008 - HMPREF1078_RS06535 0.11 +0.4
691,016 - HMPREF1078_RS06535 0.12 +1.0
691,017 + HMPREF1078_RS06535 0.12 -0.4
691,028 + HMPREF1078_RS06535 0.12 +0.5
691,032 + HMPREF1078_RS06535 0.13 +0.0
691,033 - HMPREF1078_RS06535 0.13 -2.1
691,097 - HMPREF1078_RS06535 0.16 -1.1
691,143 + HMPREF1078_RS06535 0.18 +1.0
691,143 + HMPREF1078_RS06535 0.18 +0.6
691,194 + HMPREF1078_RS06535 0.21 +0.0
691,195 - HMPREF1078_RS06535 0.21 -1.3
691,195 - HMPREF1078_RS06535 0.21 +0.0
691,195 - HMPREF1078_RS06535 0.21 -0.5
691,196 + HMPREF1078_RS06535 0.21 -1.3
691,196 + HMPREF1078_RS06535 0.21 -1.0
691,198 + HMPREF1078_RS06535 0.21 -1.5
691,199 - HMPREF1078_RS06535 0.21 +0.1
691,229 + HMPREF1078_RS06535 0.23 -0.2
691,229 + HMPREF1078_RS06535 0.23 -0.6
691,229 + HMPREF1078_RS06535 0.23 +0.0
691,272 - HMPREF1078_RS06535 0.25 +0.0
691,272 - HMPREF1078_RS06535 0.25 -0.0
691,272 - HMPREF1078_RS06535 0.25 +0.0
691,272 - HMPREF1078_RS06535 0.25 -1.8
691,272 - HMPREF1078_RS06535 0.25 -1.5
691,273 + HMPREF1078_RS06535 0.25 -0.4
691,274 - HMPREF1078_RS06535 0.25 +0.4
691,296 + HMPREF1078_RS06535 0.26 -1.1
691,314 + HMPREF1078_RS06535 0.27 -0.9
691,315 - HMPREF1078_RS06535 0.27 -1.4
691,316 + HMPREF1078_RS06535 0.27 -0.9
691,316 + HMPREF1078_RS06535 0.27 +0.5
691,317 - HMPREF1078_RS06535 0.27 +1.4
691,317 - HMPREF1078_RS06535 0.27 +1.6
691,372 + HMPREF1078_RS06535 0.30 +0.0
691,426 + HMPREF1078_RS06535 0.33 -0.2
691,427 - HMPREF1078_RS06535 0.33 -1.8
691,427 - HMPREF1078_RS06535 0.33 -0.8
691,428 + HMPREF1078_RS06535 0.33 +0.0
691,428 + HMPREF1078_RS06535 0.33 -1.5
691,429 - HMPREF1078_RS06535 0.33 -0.8
691,430 + HMPREF1078_RS06535 0.33 +1.4
691,431 - HMPREF1078_RS06535 0.33 +0.4
691,431 - HMPREF1078_RS06535 0.33 -0.7
691,505 + HMPREF1078_RS06535 0.37 -0.7
691,505 + HMPREF1078_RS06535 0.37 -0.4
691,514 + HMPREF1078_RS06535 0.38 -1.3
691,515 - HMPREF1078_RS06535 0.38 +1.0
691,650 + HMPREF1078_RS06535 0.45 +0.0
691,652 + HMPREF1078_RS06535 0.45 -0.4
691,687 - HMPREF1078_RS06535 0.46 -0.7

Or see this region's nucleotide sequence