Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS06410 and HMPREF1078_RS06415 overlap by 11 nucleotides HMPREF1078_RS06415 and HMPREF1078_RS06420 overlap by 11 nucleotides HMPREF1078_RS06420 and HMPREF1078_RS06425 are separated by 4 nucleotides HMPREF1078_RS06425 and HMPREF1078_RS06430 are separated by 414 nucleotides
HMPREF1078_RS06410: HMPREF1078_RS06410 - DUF4252 domain-containing protein, at 648,473 to 648,925
_RS06410
HMPREF1078_RS06415: HMPREF1078_RS06415 - RNA polymerase sigma factor, at 648,915 to 649,433
_RS06415
HMPREF1078_RS06420: HMPREF1078_RS06420 - hypothetical protein, at 649,423 to 649,824
_RS06420
HMPREF1078_RS06425: HMPREF1078_RS06425 - DUF4252 domain-containing protein, at 649,829 to 650,323
_RS06425
HMPREF1078_RS06430: HMPREF1078_RS06430 - TonB-dependent receptor, at 650,738 to 653,848
_RS06430
Position (kb) 649
650
651 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 648.933 kb on - strand at 649.013 kb on + strand, within HMPREF1078_RS06415 at 649.029 kb on + strand, within HMPREF1078_RS06415 at 649.029 kb on + strand, within HMPREF1078_RS06415 at 649.034 kb on + strand, within HMPREF1078_RS06415 at 649.035 kb on - strand, within HMPREF1078_RS06415 at 649.039 kb on + strand, within HMPREF1078_RS06415 at 649.211 kb on - strand, within HMPREF1078_RS06415 at 649.321 kb on + strand, within HMPREF1078_RS06415 at 649.322 kb on - strand, within HMPREF1078_RS06415 at 649.322 kb on - strand, within HMPREF1078_RS06415 at 649.408 kb on - strand at 649.408 kb on - strand at 649.410 kb on + strand at 649.412 kb on + strand at 649.412 kb on + strand at 649.412 kb on + strand at 649.413 kb on - strand at 649.416 kb on + strand at 649.416 kb on + strand at 649.416 kb on + strand at 649.416 kb on + strand at 649.416 kb on + strand at 649.416 kb on + strand at 649.416 kb on + strand at 649.416 kb on + strand at 649.417 kb on - strand at 649.417 kb on - strand at 649.417 kb on - strand at 649.417 kb on - strand at 649.417 kb on - strand at 649.417 kb on - strand at 649.417 kb on - strand at 649.417 kb on - strand at 649.417 kb on - strand at 649.422 kb on + strand at 649.422 kb on + strand at 649.432 kb on - strand at 649.432 kb on - strand at 649.439 kb on + strand at 649.440 kb on - strand at 649.440 kb on - strand at 649.440 kb on - strand at 649.440 kb on - strand at 649.455 kb on + strand at 649.455 kb on + strand at 649.586 kb on + strand, within HMPREF1078_RS06420 at 649.586 kb on + strand, within HMPREF1078_RS06420 at 649.586 kb on + strand, within HMPREF1078_RS06420 at 649.587 kb on - strand, within HMPREF1078_RS06420 at 649.587 kb on - strand, within HMPREF1078_RS06420 at 649.633 kb on + strand, within HMPREF1078_RS06420 at 649.675 kb on + strand, within HMPREF1078_RS06420 at 649.675 kb on + strand, within HMPREF1078_RS06420 at 649.675 kb on + strand, within HMPREF1078_RS06420 at 649.675 kb on + strand, within HMPREF1078_RS06420 at 649.675 kb on + strand, within HMPREF1078_RS06420 at 649.675 kb on + strand, within HMPREF1078_RS06420 at 649.676 kb on - strand, within HMPREF1078_RS06420 at 649.676 kb on - strand, within HMPREF1078_RS06420 at 649.676 kb on - strand, within HMPREF1078_RS06420 at 649.718 kb on + strand, within HMPREF1078_RS06420 at 649.718 kb on + strand, within HMPREF1078_RS06420 at 649.781 kb on + strand, within HMPREF1078_RS06420 at 649.785 kb on + strand at 649.786 kb on - strand at 649.786 kb on - strand at 649.790 kb on + strand at 649.790 kb on + strand at 649.790 kb on + strand at 649.791 kb on - strand at 649.814 kb on + strand at 649.822 kb on + strand at 649.836 kb on + strand at 649.837 kb on - strand at 649.844 kb on - strand at 649.844 kb on - strand at 649.844 kb on - strand at 649.845 kb on + strand at 649.845 kb on + strand at 649.846 kb on - strand at 649.846 kb on - strand at 649.910 kb on + strand, within HMPREF1078_RS06425 at 649.924 kb on + strand, within HMPREF1078_RS06425 at 649.925 kb on - strand, within HMPREF1078_RS06425 at 649.929 kb on + strand, within HMPREF1078_RS06425 at 649.929 kb on + strand, within HMPREF1078_RS06425 at 649.929 kb on + strand, within HMPREF1078_RS06425 at 649.929 kb on + strand, within HMPREF1078_RS06425 at 649.929 kb on + strand, within HMPREF1078_RS06425 at 649.929 kb on + strand, within HMPREF1078_RS06425 at 649.929 kb on + strand, within HMPREF1078_RS06425 at 649.930 kb on - strand, within HMPREF1078_RS06425 at 649.930 kb on - strand, within HMPREF1078_RS06425 at 649.930 kb on - strand, within HMPREF1078_RS06425 at 649.930 kb on - strand, within HMPREF1078_RS06425 at 649.930 kb on - strand, within HMPREF1078_RS06425 at 649.930 kb on - strand, within HMPREF1078_RS06425 at 649.972 kb on + strand, within HMPREF1078_RS06425 at 649.977 kb on + strand, within HMPREF1078_RS06425 at 650.137 kb on + strand, within HMPREF1078_RS06425 at 650.138 kb on - strand, within HMPREF1078_RS06425 at 650.138 kb on - strand, within HMPREF1078_RS06425 at 650.154 kb on - strand, within HMPREF1078_RS06425 at 650.175 kb on + strand, within HMPREF1078_RS06425 at 650.175 kb on + strand, within HMPREF1078_RS06425 at 650.175 kb on + strand, within HMPREF1078_RS06425 at 650.176 kb on - strand, within HMPREF1078_RS06425 at 650.176 kb on - strand, within HMPREF1078_RS06425 at 650.216 kb on + strand, within HMPREF1078_RS06425 at 650.217 kb on - strand, within HMPREF1078_RS06425 at 650.217 kb on - strand, within HMPREF1078_RS06425 at 650.257 kb on + strand, within HMPREF1078_RS06425 at 650.258 kb on - strand, within HMPREF1078_RS06425 at 650.259 kb on + strand, within HMPREF1078_RS06425 at 650.259 kb on + strand, within HMPREF1078_RS06425 at 650.259 kb on + strand, within HMPREF1078_RS06425 at 650.294 kb on - strand at 650.305 kb on - strand at 650.305 kb on - strand at 650.316 kb on - strand at 650.321 kb on + strand at 650.337 kb on + strand at 650.342 kb on - strand at 650.358 kb on + strand at 650.392 kb on + strand at 650.393 kb on - strand at 650.398 kb on + strand at 650.432 kb on + strand at 650.437 kb on - strand at 650.437 kb on - strand at 650.440 kb on + strand at 650.441 kb on - strand at 650.441 kb on - strand at 650.471 kb on + strand at 650.506 kb on + strand at 650.600 kb on + strand at 650.600 kb on + strand at 650.600 kb on + strand at 650.601 kb on - strand at 650.601 kb on - strand at 650.602 kb on + strand at 650.603 kb on - strand at 650.609 kb on + strand at 650.642 kb on - strand at 650.649 kb on + strand at 650.666 kb on + strand at 650.671 kb on - strand at 650.707 kb on + strand at 650.732 kb on - strand at 650.753 kb on + strand at 650.764 kb on - strand at 650.781 kb on + strand at 650.781 kb on + strand at 650.781 kb on + strand at 650.785 kb on - strand at 650.796 kb on + strand at 650.851 kb on + strand at 650.852 kb on - strand at 650.853 kb on + strand at 650.853 kb on + strand at 650.908 kb on + strand at 650.908 kb on + strand at 650.908 kb on + strand at 650.909 kb on - strand at 650.909 kb on - strand at 650.909 kb on - strand at 650.909 kb on - strand at 650.956 kb on + strand at 651.003 kb on + strand at 651.067 kb on - strand, within HMPREF1078_RS06430 at 651.091 kb on - strand, within HMPREF1078_RS06430 at 651.122 kb on + strand, within HMPREF1078_RS06430 at 651.123 kb on - strand, within HMPREF1078_RS06430 at 651.183 kb on + strand, within HMPREF1078_RS06430 at 651.241 kb on - strand, within HMPREF1078_RS06430 at 651.241 kb on - strand, within HMPREF1078_RS06430 at 651.256 kb on + strand, within HMPREF1078_RS06430 at 651.257 kb on - strand, within HMPREF1078_RS06430 at 651.308 kb on - strand, within HMPREF1078_RS06430 at 651.320 kb on - strand, within HMPREF1078_RS06430
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day4 remove 648,933 - +0.2 649,013 + HMPREF1078_RS06415 0.19 +0.6 649,029 + HMPREF1078_RS06415 0.22 -1.0 649,029 + HMPREF1078_RS06415 0.22 +1.0 649,034 + HMPREF1078_RS06415 0.23 +0.9 649,035 - HMPREF1078_RS06415 0.23 -0.9 649,039 + HMPREF1078_RS06415 0.24 -0.7 649,211 - HMPREF1078_RS06415 0.57 -1.1 649,321 + HMPREF1078_RS06415 0.78 +1.8 649,322 - HMPREF1078_RS06415 0.78 -0.9 649,322 - HMPREF1078_RS06415 0.78 -1.9 649,408 - -1.0 649,408 - -2.7 649,410 + -1.5 649,412 + -0.5 649,412 + -0.3 649,412 + -0.3 649,413 - -2.1 649,416 + -3.0 649,416 + -4.0 649,416 + -0.7 649,416 + -1.8 649,416 + +0.4 649,416 + +0.3 649,416 + -0.5 649,416 + -3.5 649,417 - -2.0 649,417 - -3.6 649,417 - -1.8 649,417 - +1.0 649,417 - -3.1 649,417 - -2.5 649,417 - +1.0 649,417 - -0.5 649,417 - +1.0 649,422 + -1.8 649,422 + -2.1 649,432 - -1.0 649,432 - -1.5 649,439 + -3.6 649,440 - -2.4 649,440 - +0.0 649,440 - -2.7 649,440 - -2.4 649,455 + -2.1 649,455 + -2.3 649,586 + HMPREF1078_RS06420 0.41 +1.9 649,586 + HMPREF1078_RS06420 0.41 +0.6 649,586 + HMPREF1078_RS06420 0.41 +1.0 649,587 - HMPREF1078_RS06420 0.41 -2.7 649,587 - HMPREF1078_RS06420 0.41 -2.1 649,633 + HMPREF1078_RS06420 0.52 -3.7 649,675 + HMPREF1078_RS06420 0.63 -0.6 649,675 + HMPREF1078_RS06420 0.63 -0.0 649,675 + HMPREF1078_RS06420 0.63 -0.8 649,675 + HMPREF1078_RS06420 0.63 -3.0 649,675 + HMPREF1078_RS06420 0.63 -0.6 649,675 + HMPREF1078_RS06420 0.63 +2.3 649,676 - HMPREF1078_RS06420 0.63 -0.5 649,676 - HMPREF1078_RS06420 0.63 -0.9 649,676 - HMPREF1078_RS06420 0.63 -0.8 649,718 + HMPREF1078_RS06420 0.73 -2.9 649,718 + HMPREF1078_RS06420 0.73 -2.7 649,781 + HMPREF1078_RS06420 0.89 -3.7 649,785 + -1.8 649,786 - -1.3 649,786 - -1.3 649,790 + -2.7 649,790 + -3.3 649,790 + -2.1 649,791 - -0.5 649,814 + -3.0 649,822 + -2.1 649,836 + -2.4 649,837 - -3.3 649,844 - -2.4 649,844 - -1.8 649,844 - -1.0 649,845 + -2.0 649,845 + -2.9 649,846 - -2.8 649,846 - -3.0 649,910 + HMPREF1078_RS06425 0.16 -2.0 649,924 + HMPREF1078_RS06425 0.19 -2.0 649,925 - HMPREF1078_RS06425 0.19 -1.5 649,929 + HMPREF1078_RS06425 0.20 -1.0 649,929 + HMPREF1078_RS06425 0.20 -2.3 649,929 + HMPREF1078_RS06425 0.20 -1.5 649,929 + HMPREF1078_RS06425 0.20 -2.1 649,929 + HMPREF1078_RS06425 0.20 -3.6 649,929 + HMPREF1078_RS06425 0.20 -1.8 649,929 + HMPREF1078_RS06425 0.20 -2.7 649,930 - HMPREF1078_RS06425 0.20 +0.0 649,930 - HMPREF1078_RS06425 0.20 -0.5 649,930 - HMPREF1078_RS06425 0.20 -1.8 649,930 - HMPREF1078_RS06425 0.20 +0.0 649,930 - HMPREF1078_RS06425 0.20 -1.3 649,930 - HMPREF1078_RS06425 0.20 -3.0 649,972 + HMPREF1078_RS06425 0.29 -2.4 649,977 + HMPREF1078_RS06425 0.30 -1.3 650,137 + HMPREF1078_RS06425 0.62 -2.7 650,138 - HMPREF1078_RS06425 0.62 -1.8 650,138 - HMPREF1078_RS06425 0.62 -1.0 650,154 - HMPREF1078_RS06425 0.66 -1.0 650,175 + HMPREF1078_RS06425 0.70 -2.4 650,175 + HMPREF1078_RS06425 0.70 -3.2 650,175 + HMPREF1078_RS06425 0.70 -2.7 650,176 - HMPREF1078_RS06425 0.70 -1.0 650,176 - HMPREF1078_RS06425 0.70 +1.0 650,216 + HMPREF1078_RS06425 0.78 +0.3 650,217 - HMPREF1078_RS06425 0.78 -2.1 650,217 - HMPREF1078_RS06425 0.78 -1.8 650,257 + HMPREF1078_RS06425 0.86 -2.7 650,258 - HMPREF1078_RS06425 0.87 -1.8 650,259 + HMPREF1078_RS06425 0.87 +1.0 650,259 + HMPREF1078_RS06425 0.87 +2.9 650,259 + HMPREF1078_RS06425 0.87 +0.0 650,294 - -0.7 650,305 - +1.0 650,305 - -3.1 650,316 - +0.0 650,321 + +0.7 650,337 + +0.4 650,342 - -2.0 650,358 + +0.5 650,392 + +1.1 650,393 - -0.5 650,398 + +0.7 650,432 + -0.5 650,437 - +1.2 650,437 - +0.8 650,440 + -1.8 650,441 - +0.0 650,441 - -1.3 650,471 + +0.8 650,506 + -0.8 650,600 + -1.3 650,600 + +0.0 650,600 + +0.7 650,601 - -0.4 650,601 - -0.6 650,602 + +1.0 650,603 - +1.2 650,609 + +1.2 650,642 - +0.1 650,649 + -0.4 650,666 + +1.0 650,671 - +2.0 650,707 + -0.7 650,732 - -0.7 650,753 + -1.0 650,764 - -1.8 650,781 + -3.5 650,781 + -0.5 650,781 + -0.2 650,785 - +2.0 650,796 + +0.5 650,851 + -0.5 650,852 - -1.4 650,853 + -0.8 650,853 + +0.9 650,908 + +1.6 650,908 + -2.5 650,908 + -0.4 650,909 - -0.7 650,909 - -1.1 650,909 - -1.8 650,909 - -0.7 650,956 + +0.3 651,003 + +1.7 651,067 - HMPREF1078_RS06430 0.11 +0.4 651,091 - HMPREF1078_RS06430 0.11 -0.5 651,122 + HMPREF1078_RS06430 0.12 -0.7 651,123 - HMPREF1078_RS06430 0.12 +1.3 651,183 + HMPREF1078_RS06430 0.14 +1.9 651,241 - HMPREF1078_RS06430 0.16 -1.5 651,241 - HMPREF1078_RS06430 0.16 -0.2 651,256 + HMPREF1078_RS06430 0.17 +0.8 651,257 - HMPREF1078_RS06430 0.17 -0.0 651,308 - HMPREF1078_RS06430 0.18 -0.1 651,320 - HMPREF1078_RS06430 0.19 +2.0
Or see this region's nucleotide sequence