Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS05830 and HMPREF1078_RS05835 are separated by 9 nucleotides HMPREF1078_RS05835 and HMPREF1078_RS05840 are separated by 54 nucleotides
HMPREF1078_RS05830: HMPREF1078_RS05830 - riboflavin biosynthesis protein RibF, at 492,866 to 493,792
_RS05830
HMPREF1078_RS05835: HMPREF1078_RS05835 - M20 family metallo-hydrolase, at 493,802 to 494,857
_RS05835
HMPREF1078_RS05840: HMPREF1078_RS05840 - lipopolysaccharide biosynthesis protein, at 494,912 to 496,201
_RS05840
Position (kb) 493
494
495 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 492.806 kb on - strand at 492.839 kb on + strand at 492.839 kb on + strand at 492.839 kb on + strand at 492.839 kb on + strand at 492.843 kb on + strand at 492.843 kb on + strand at 492.845 kb on + strand at 493.775 kb on - strand at 493.775 kb on - strand at 493.798 kb on - strand at 493.806 kb on - strand at 493.806 kb on - strand at 493.818 kb on + strand at 493.818 kb on + strand at 493.825 kb on - strand at 493.915 kb on + strand, within HMPREF1078_RS05835 at 494.139 kb on + strand, within HMPREF1078_RS05835 at 494.596 kb on - strand, within HMPREF1078_RS05835 at 494.729 kb on + strand, within HMPREF1078_RS05835 at 494.782 kb on + strand at 494.819 kb on + strand at 494.819 kb on + strand at 494.819 kb on + strand at 494.820 kb on - strand at 494.822 kb on - strand at 494.856 kb on + strand at 494.889 kb on + strand at 494.911 kb on + strand at 494.911 kb on + strand at 494.911 kb on + strand at 494.912 kb on - strand at 494.982 kb on + strand at 495.040 kb on - strand at 495.042 kb on + strand, within HMPREF1078_RS05840 at 495.043 kb on - strand, within HMPREF1078_RS05840 at 495.083 kb on - strand, within HMPREF1078_RS05840 at 495.138 kb on - strand, within HMPREF1078_RS05840 at 495.224 kb on + strand, within HMPREF1078_RS05840 at 495.225 kb on - strand, within HMPREF1078_RS05840 at 495.331 kb on - strand, within HMPREF1078_RS05840 at 495.346 kb on - strand, within HMPREF1078_RS05840 at 495.346 kb on - strand, within HMPREF1078_RS05840 at 495.348 kb on + strand, within HMPREF1078_RS05840 at 495.356 kb on + strand, within HMPREF1078_RS05840 at 495.372 kb on + strand, within HMPREF1078_RS05840 at 495.373 kb on - strand, within HMPREF1078_RS05840 at 495.405 kb on - strand, within HMPREF1078_RS05840 at 495.500 kb on + strand, within HMPREF1078_RS05840 at 495.554 kb on + strand, within HMPREF1078_RS05840 at 495.667 kb on + strand, within HMPREF1078_RS05840 at 495.695 kb on + strand, within HMPREF1078_RS05840
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day4 remove 492,806 - +0.0 492,839 + +0.6 492,839 + +1.1 492,839 + +0.4 492,839 + +1.5 492,843 + +1.3 492,843 + +2.2 492,845 + +1.1 493,775 - -1.2 493,775 - -2.6 493,798 - -1.4 493,806 - -4.7 493,806 - -4.7 493,818 + -1.2 493,818 + -1.4 493,825 - -3.4 493,915 + HMPREF1078_RS05835 0.11 +0.7 494,139 + HMPREF1078_RS05835 0.32 -2.5 494,596 - HMPREF1078_RS05835 0.75 -3.5 494,729 + HMPREF1078_RS05835 0.88 -2.1 494,782 + -2.1 494,819 + -2.5 494,819 + -3.1 494,819 + -1.7 494,820 - -1.8 494,822 - -0.9 494,856 + +1.8 494,889 + -1.6 494,911 + -0.3 494,911 + -2.6 494,911 + -0.5 494,912 - -1.5 494,982 + -2.6 495,040 - -0.5 495,042 + HMPREF1078_RS05840 0.10 -1.7 495,043 - HMPREF1078_RS05840 0.10 -2.2 495,083 - HMPREF1078_RS05840 0.13 -3.0 495,138 - HMPREF1078_RS05840 0.18 -0.5 495,224 + HMPREF1078_RS05840 0.24 -1.6 495,225 - HMPREF1078_RS05840 0.24 -2.6 495,331 - HMPREF1078_RS05840 0.32 -2.4 495,346 - HMPREF1078_RS05840 0.34 +0.5 495,346 - HMPREF1078_RS05840 0.34 -0.9 495,348 + HMPREF1078_RS05840 0.34 -1.5 495,356 + HMPREF1078_RS05840 0.34 -1.7 495,372 + HMPREF1078_RS05840 0.36 -1.6 495,373 - HMPREF1078_RS05840 0.36 -2.6 495,405 - HMPREF1078_RS05840 0.38 -0.8 495,500 + HMPREF1078_RS05840 0.46 -3.1 495,554 + HMPREF1078_RS05840 0.50 -2.1 495,667 + HMPREF1078_RS05840 0.59 -2.9 495,695 + HMPREF1078_RS05840 0.61 -1.3
Or see this region's nucleotide sequence