Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS05540 and HMPREF1078_RS05545 are separated by 16 nucleotides HMPREF1078_RS05545 and HMPREF1078_RS05550 are separated by 111 nucleotides
HMPREF1078_RS05540: HMPREF1078_RS05540 - signal peptidase I, at 400,127 to 401,524
_RS05540
HMPREF1078_RS05545: HMPREF1078_RS05545 - 4-hydroxy-tetrahydrodipicolinate reductase, at 401,541 to 402,257
_RS05545
HMPREF1078_RS05550: HMPREF1078_RS05550 - DUF2851 family protein, at 402,369 to 403,652
_RS05550
Position (kb) 401
402
403 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2 at 401.539 kb on - strand at 401.556 kb on - strand at 401.556 kb on - strand at 401.734 kb on - strand, within HMPREF1078_RS05545 at 401.734 kb on - strand, within HMPREF1078_RS05545 at 401.734 kb on - strand, within HMPREF1078_RS05545 at 401.734 kb on - strand, within HMPREF1078_RS05545 at 401.817 kb on - strand, within HMPREF1078_RS05545 at 401.817 kb on - strand, within HMPREF1078_RS05545 at 401.817 kb on - strand, within HMPREF1078_RS05545 at 401.856 kb on - strand, within HMPREF1078_RS05545 at 401.892 kb on - strand, within HMPREF1078_RS05545 at 401.912 kb on - strand, within HMPREF1078_RS05545 at 401.938 kb on - strand, within HMPREF1078_RS05545 at 401.938 kb on - strand, within HMPREF1078_RS05545 at 401.976 kb on - strand, within HMPREF1078_RS05545 at 401.994 kb on - strand, within HMPREF1078_RS05545 at 401.994 kb on - strand, within HMPREF1078_RS05545 at 402.072 kb on - strand, within HMPREF1078_RS05545 at 402.074 kb on - strand, within HMPREF1078_RS05545 at 402.074 kb on - strand, within HMPREF1078_RS05545 at 402.074 kb on - strand, within HMPREF1078_RS05545 at 402.090 kb on - strand, within HMPREF1078_RS05545 at 402.145 kb on - strand, within HMPREF1078_RS05545 at 402.165 kb on - strand, within HMPREF1078_RS05545 at 402.205 kb on - strand at 402.262 kb on - strand at 402.262 kb on - strand at 402.264 kb on - strand at 402.264 kb on - strand at 402.264 kb on - strand at 402.270 kb on - strand at 402.387 kb on + strand at 402.408 kb on + strand at 402.428 kb on - strand at 402.517 kb on + strand, within HMPREF1078_RS05550 at 402.557 kb on + strand, within HMPREF1078_RS05550 at 402.558 kb on - strand, within HMPREF1078_RS05550 at 402.603 kb on + strand, within HMPREF1078_RS05550 at 402.603 kb on + strand, within HMPREF1078_RS05550 at 402.604 kb on - strand, within HMPREF1078_RS05550 at 402.613 kb on + strand, within HMPREF1078_RS05550 at 402.628 kb on + strand, within HMPREF1078_RS05550 at 402.629 kb on - strand, within HMPREF1078_RS05550 at 402.629 kb on - strand, within HMPREF1078_RS05550 at 402.718 kb on + strand, within HMPREF1078_RS05550 at 402.718 kb on + strand, within HMPREF1078_RS05550 at 402.767 kb on - strand, within HMPREF1078_RS05550 at 402.767 kb on - strand, within HMPREF1078_RS05550 at 402.788 kb on + strand, within HMPREF1078_RS05550 at 402.789 kb on - strand, within HMPREF1078_RS05550 at 402.789 kb on - strand, within HMPREF1078_RS05550 at 402.789 kb on - strand, within HMPREF1078_RS05550 at 402.790 kb on + strand, within HMPREF1078_RS05550 at 402.790 kb on + strand, within HMPREF1078_RS05550 at 402.847 kb on + strand, within HMPREF1078_RS05550 at 402.847 kb on + strand, within HMPREF1078_RS05550 at 402.848 kb on - strand, within HMPREF1078_RS05550 at 402.848 kb on - strand, within HMPREF1078_RS05550 at 402.848 kb on - strand, within HMPREF1078_RS05550 at 402.848 kb on - strand, within HMPREF1078_RS05550 at 402.895 kb on - strand, within HMPREF1078_RS05550 at 403.066 kb on - strand, within HMPREF1078_RS05550 at 403.089 kb on + strand, within HMPREF1078_RS05550 at 403.106 kb on + strand, within HMPREF1078_RS05550 at 403.150 kb on + strand, within HMPREF1078_RS05550
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day4 remove 401,539 - -0.5 401,556 - -3.2 401,556 - -3.3 401,734 - HMPREF1078_RS05545 0.27 -1.1 401,734 - HMPREF1078_RS05545 0.27 -3.8 401,734 - HMPREF1078_RS05545 0.27 -1.2 401,734 - HMPREF1078_RS05545 0.27 -4.5 401,817 - HMPREF1078_RS05545 0.38 -5.1 401,817 - HMPREF1078_RS05545 0.38 -4.5 401,817 - HMPREF1078_RS05545 0.38 -1.9 401,856 - HMPREF1078_RS05545 0.44 -4.5 401,892 - HMPREF1078_RS05545 0.49 -3.2 401,912 - HMPREF1078_RS05545 0.52 -4.1 401,938 - HMPREF1078_RS05545 0.55 -0.5 401,938 - HMPREF1078_RS05545 0.55 -6.0 401,976 - HMPREF1078_RS05545 0.61 +0.1 401,994 - HMPREF1078_RS05545 0.63 +1.1 401,994 - HMPREF1078_RS05545 0.63 -3.7 402,072 - HMPREF1078_RS05545 0.74 -3.4 402,074 - HMPREF1078_RS05545 0.74 -4.0 402,074 - HMPREF1078_RS05545 0.74 -2.2 402,074 - HMPREF1078_RS05545 0.74 -2.4 402,090 - HMPREF1078_RS05545 0.77 -0.9 402,145 - HMPREF1078_RS05545 0.84 -2.8 402,165 - HMPREF1078_RS05545 0.87 -3.4 402,205 - -1.7 402,262 - -1.9 402,262 - -2.2 402,264 - -1.8 402,264 - -0.5 402,264 - -2.6 402,270 - -2.1 402,387 + +2.1 402,408 + -0.7 402,428 - +1.2 402,517 + HMPREF1078_RS05550 0.12 -2.5 402,557 + HMPREF1078_RS05550 0.15 -1.4 402,558 - HMPREF1078_RS05550 0.15 +1.6 402,603 + HMPREF1078_RS05550 0.18 +0.1 402,603 + HMPREF1078_RS05550 0.18 +0.3 402,604 - HMPREF1078_RS05550 0.18 +1.1 402,613 + HMPREF1078_RS05550 0.19 -0.5 402,628 + HMPREF1078_RS05550 0.20 -0.4 402,629 - HMPREF1078_RS05550 0.20 -0.5 402,629 - HMPREF1078_RS05550 0.20 -1.7 402,718 + HMPREF1078_RS05550 0.27 +1.4 402,718 + HMPREF1078_RS05550 0.27 +0.5 402,767 - HMPREF1078_RS05550 0.31 +2.3 402,767 - HMPREF1078_RS05550 0.31 -1.5 402,788 + HMPREF1078_RS05550 0.33 +0.3 402,789 - HMPREF1078_RS05550 0.33 -0.7 402,789 - HMPREF1078_RS05550 0.33 -1.8 402,789 - HMPREF1078_RS05550 0.33 +0.7 402,790 + HMPREF1078_RS05550 0.33 +1.2 402,790 + HMPREF1078_RS05550 0.33 -0.9 402,847 + HMPREF1078_RS05550 0.37 -1.5 402,847 + HMPREF1078_RS05550 0.37 -0.8 402,848 - HMPREF1078_RS05550 0.37 -1.2 402,848 - HMPREF1078_RS05550 0.37 -0.7 402,848 - HMPREF1078_RS05550 0.37 -0.5 402,848 - HMPREF1078_RS05550 0.37 -0.9 402,895 - HMPREF1078_RS05550 0.41 -0.2 403,066 - HMPREF1078_RS05550 0.54 -0.4 403,089 + HMPREF1078_RS05550 0.56 -2.1 403,106 + HMPREF1078_RS05550 0.57 -0.6 403,150 + HMPREF1078_RS05550 0.61 +2.2
Or see this region's nucleotide sequence