Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS05510 and HMPREF1078_RS05515 are separated by 47 nucleotides HMPREF1078_RS05515 and HMPREF1078_RS05520 are separated by 100 nucleotides
HMPREF1078_RS05510: HMPREF1078_RS05510 - gliding motility protein GldM, at 391,444 to 393,012
_RS05510
HMPREF1078_RS05515: HMPREF1078_RS05515 - gliding motility protein GldN, at 393,060 to 394,151
_RS05515
HMPREF1078_RS05520: HMPREF1078_RS05520 - transglutaminase-like domain-containing protein, at 394,252 to 396,909
_RS05520
Position (kb) 393
394
395 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 392.072 kb on - strand, within HMPREF1078_RS05510 at 392.192 kb on - strand, within HMPREF1078_RS05510 at 392.192 kb on - strand, within HMPREF1078_RS05510 at 392.203 kb on - strand, within HMPREF1078_RS05510 at 392.210 kb on + strand, within HMPREF1078_RS05510 at 392.245 kb on + strand, within HMPREF1078_RS05510 at 392.269 kb on + strand, within HMPREF1078_RS05510 at 392.269 kb on + strand, within HMPREF1078_RS05510 at 392.270 kb on - strand, within HMPREF1078_RS05510 at 392.270 kb on - strand, within HMPREF1078_RS05510 at 392.297 kb on + strand, within HMPREF1078_RS05510 at 392.332 kb on + strand, within HMPREF1078_RS05510 at 392.334 kb on + strand, within HMPREF1078_RS05510 at 392.389 kb on + strand, within HMPREF1078_RS05510 at 392.390 kb on - strand, within HMPREF1078_RS05510 at 392.443 kb on + strand, within HMPREF1078_RS05510 at 392.443 kb on + strand, within HMPREF1078_RS05510 at 392.443 kb on + strand, within HMPREF1078_RS05510 at 392.601 kb on + strand, within HMPREF1078_RS05510 at 392.601 kb on + strand, within HMPREF1078_RS05510 at 392.651 kb on + strand, within HMPREF1078_RS05510 at 392.652 kb on - strand, within HMPREF1078_RS05510 at 392.679 kb on + strand, within HMPREF1078_RS05510 at 392.686 kb on + strand, within HMPREF1078_RS05510 at 392.688 kb on + strand, within HMPREF1078_RS05510 at 392.688 kb on + strand, within HMPREF1078_RS05510 at 392.688 kb on + strand, within HMPREF1078_RS05510 at 392.689 kb on - strand, within HMPREF1078_RS05510 at 392.689 kb on - strand, within HMPREF1078_RS05510 at 392.903 kb on - strand at 392.903 kb on - strand at 392.903 kb on - strand at 392.904 kb on + strand at 392.905 kb on - strand at 392.905 kb on - strand at 392.905 kb on - strand at 392.936 kb on - strand at 392.936 kb on - strand at 392.954 kb on + strand at 392.955 kb on - strand at 392.979 kb on + strand at 392.979 kb on + strand at 392.979 kb on + strand at 392.980 kb on - strand at 392.980 kb on - strand at 392.999 kb on + strand at 393.010 kb on + strand at 393.010 kb on + strand at 393.010 kb on + strand at 393.015 kb on + strand at 393.016 kb on - strand at 393.016 kb on - strand at 393.020 kb on + strand at 393.020 kb on + strand at 393.050 kb on - strand at 393.050 kb on - strand at 393.057 kb on + strand at 393.057 kb on + strand at 393.057 kb on + strand at 393.058 kb on - strand at 393.059 kb on + strand at 393.059 kb on + strand at 393.060 kb on - strand at 393.070 kb on + strand at 393.070 kb on + strand at 393.071 kb on - strand at 393.072 kb on + strand at 393.073 kb on - strand at 393.074 kb on + strand at 393.075 kb on + strand at 393.075 kb on + strand at 393.076 kb on - strand at 393.076 kb on - strand at 393.079 kb on + strand at 393.079 kb on + strand at 393.079 kb on + strand at 393.080 kb on - strand at 393.080 kb on - strand at 393.251 kb on + strand, within HMPREF1078_RS05515 at 393.276 kb on - strand, within HMPREF1078_RS05515 at 393.307 kb on - strand, within HMPREF1078_RS05515 at 393.324 kb on - strand, within HMPREF1078_RS05515 at 393.324 kb on - strand, within HMPREF1078_RS05515 at 393.346 kb on + strand, within HMPREF1078_RS05515 at 393.346 kb on + strand, within HMPREF1078_RS05515 at 393.346 kb on + strand, within HMPREF1078_RS05515 at 393.347 kb on - strand, within HMPREF1078_RS05515 at 393.347 kb on - strand, within HMPREF1078_RS05515 at 393.348 kb on + strand, within HMPREF1078_RS05515 at 393.348 kb on + strand, within HMPREF1078_RS05515 at 393.348 kb on + strand, within HMPREF1078_RS05515 at 393.348 kb on + strand, within HMPREF1078_RS05515 at 393.349 kb on - strand, within HMPREF1078_RS05515 at 393.349 kb on - strand, within HMPREF1078_RS05515 at 393.349 kb on - strand, within HMPREF1078_RS05515 at 393.351 kb on + strand, within HMPREF1078_RS05515 at 393.351 kb on + strand, within HMPREF1078_RS05515 at 393.433 kb on - strand, within HMPREF1078_RS05515 at 393.439 kb on - strand, within HMPREF1078_RS05515 at 393.510 kb on - strand, within HMPREF1078_RS05515 at 393.601 kb on - strand, within HMPREF1078_RS05515 at 393.601 kb on - strand, within HMPREF1078_RS05515 at 393.601 kb on - strand, within HMPREF1078_RS05515 at 393.603 kb on + strand, within HMPREF1078_RS05515 at 393.604 kb on - strand, within HMPREF1078_RS05515 at 393.607 kb on + strand, within HMPREF1078_RS05515 at 393.607 kb on + strand, within HMPREF1078_RS05515 at 393.608 kb on - strand, within HMPREF1078_RS05515 at 393.608 kb on - strand, within HMPREF1078_RS05515 at 393.608 kb on - strand, within HMPREF1078_RS05515 at 393.621 kb on + strand, within HMPREF1078_RS05515 at 393.750 kb on + strand, within HMPREF1078_RS05515 at 393.751 kb on - strand, within HMPREF1078_RS05515 at 393.753 kb on - strand, within HMPREF1078_RS05515 at 393.753 kb on - strand, within HMPREF1078_RS05515 at 393.765 kb on + strand, within HMPREF1078_RS05515 at 393.766 kb on - strand, within HMPREF1078_RS05515 at 393.766 kb on - strand, within HMPREF1078_RS05515 at 393.767 kb on + strand, within HMPREF1078_RS05515 at 393.768 kb on - strand, within HMPREF1078_RS05515 at 393.768 kb on - strand, within HMPREF1078_RS05515 at 393.845 kb on + strand, within HMPREF1078_RS05515 at 394.001 kb on + strand, within HMPREF1078_RS05515 at 394.001 kb on + strand, within HMPREF1078_RS05515 at 394.001 kb on + strand, within HMPREF1078_RS05515 at 394.135 kb on + strand at 394.159 kb on + strand at 394.159 kb on + strand at 394.191 kb on + strand at 394.217 kb on - strand at 394.222 kb on - strand at 394.222 kb on - strand at 394.222 kb on - strand at 394.222 kb on - strand at 394.232 kb on + strand at 394.260 kb on + strand at 394.260 kb on + strand at 394.260 kb on + strand at 394.261 kb on - strand at 394.261 kb on - strand at 394.261 kb on - strand at 394.261 kb on - strand at 394.261 kb on - strand at 394.261 kb on - strand at 394.264 kb on + strand at 394.264 kb on + strand at 394.265 kb on - strand at 394.265 kb on - strand at 394.265 kb on - strand at 394.265 kb on - strand at 394.265 kb on - strand at 394.383 kb on + strand at 394.383 kb on + strand at 394.384 kb on - strand at 394.423 kb on + strand at 394.423 kb on + strand at 394.423 kb on + strand at 394.423 kb on + strand at 394.424 kb on - strand at 394.424 kb on - strand at 394.424 kb on - strand at 394.424 kb on - strand at 394.424 kb on - strand at 394.424 kb on - strand at 394.430 kb on + strand at 394.431 kb on - strand at 394.441 kb on - strand at 394.610 kb on + strand, within HMPREF1078_RS05520 at 394.610 kb on + strand, within HMPREF1078_RS05520 at 394.611 kb on - strand, within HMPREF1078_RS05520 at 394.611 kb on - strand, within HMPREF1078_RS05520 at 394.611 kb on - strand, within HMPREF1078_RS05520 at 394.611 kb on - strand, within HMPREF1078_RS05520 at 394.657 kb on - strand, within HMPREF1078_RS05520 at 394.705 kb on + strand, within HMPREF1078_RS05520 at 394.705 kb on + strand, within HMPREF1078_RS05520 at 394.705 kb on + strand, within HMPREF1078_RS05520 at 394.706 kb on - strand, within HMPREF1078_RS05520 at 394.762 kb on + strand, within HMPREF1078_RS05520 at 394.789 kb on + strand, within HMPREF1078_RS05520 at 394.806 kb on + strand, within HMPREF1078_RS05520 at 394.807 kb on - strand, within HMPREF1078_RS05520 at 394.827 kb on + strand, within HMPREF1078_RS05520 at 394.827 kb on + strand, within HMPREF1078_RS05520 at 394.827 kb on + strand, within HMPREF1078_RS05520 at 394.828 kb on - strand, within HMPREF1078_RS05520 at 394.828 kb on - strand, within HMPREF1078_RS05520 at 394.828 kb on - strand, within HMPREF1078_RS05520 at 394.828 kb on - strand, within HMPREF1078_RS05520 at 394.828 kb on - strand, within HMPREF1078_RS05520 at 394.829 kb on + strand, within HMPREF1078_RS05520 at 394.829 kb on + strand, within HMPREF1078_RS05520 at 394.830 kb on - strand, within HMPREF1078_RS05520 at 394.876 kb on - strand, within HMPREF1078_RS05520 at 394.917 kb on + strand, within HMPREF1078_RS05520 at 394.918 kb on - strand, within HMPREF1078_RS05520 at 394.918 kb on - strand, within HMPREF1078_RS05520 at 394.918 kb on - strand, within HMPREF1078_RS05520 at 394.974 kb on - strand, within HMPREF1078_RS05520 at 395.022 kb on + strand, within HMPREF1078_RS05520 at 395.022 kb on + strand, within HMPREF1078_RS05520 at 395.022 kb on + strand, within HMPREF1078_RS05520 at 395.023 kb on - strand, within HMPREF1078_RS05520 at 395.023 kb on - strand, within HMPREF1078_RS05520 at 395.063 kb on - strand, within HMPREF1078_RS05520 at 395.139 kb on + strand, within HMPREF1078_RS05520 at 395.140 kb on - strand, within HMPREF1078_RS05520 at 395.140 kb on - strand, within HMPREF1078_RS05520 at 395.140 kb on - strand, within HMPREF1078_RS05520 at 395.146 kb on + strand, within HMPREF1078_RS05520 at 395.147 kb on - strand, within HMPREF1078_RS05520
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day4 remove 392,072 - HMPREF1078_RS05510 0.40 -0.5 392,192 - HMPREF1078_RS05510 0.48 -2.6 392,192 - HMPREF1078_RS05510 0.48 -2.4 392,203 - HMPREF1078_RS05510 0.48 +0.1 392,210 + HMPREF1078_RS05510 0.49 -2.1 392,245 + HMPREF1078_RS05510 0.51 -2.1 392,269 + HMPREF1078_RS05510 0.53 +1.1 392,269 + HMPREF1078_RS05510 0.53 -1.5 392,270 - HMPREF1078_RS05510 0.53 -1.2 392,270 - HMPREF1078_RS05510 0.53 -2.2 392,297 + HMPREF1078_RS05510 0.54 -1.5 392,332 + HMPREF1078_RS05510 0.57 -0.5 392,334 + HMPREF1078_RS05510 0.57 -1.5 392,389 + HMPREF1078_RS05510 0.60 -1.7 392,390 - HMPREF1078_RS05510 0.60 -2.8 392,443 + HMPREF1078_RS05510 0.64 -2.2 392,443 + HMPREF1078_RS05510 0.64 -0.5 392,443 + HMPREF1078_RS05510 0.64 -2.6 392,601 + HMPREF1078_RS05510 0.74 -3.5 392,601 + HMPREF1078_RS05510 0.74 -2.6 392,651 + HMPREF1078_RS05510 0.77 +0.1 392,652 - HMPREF1078_RS05510 0.77 -0.5 392,679 + HMPREF1078_RS05510 0.79 -2.1 392,686 + HMPREF1078_RS05510 0.79 -1.2 392,688 + HMPREF1078_RS05510 0.79 -1.2 392,688 + HMPREF1078_RS05510 0.79 -1.5 392,688 + HMPREF1078_RS05510 0.79 -1.2 392,689 - HMPREF1078_RS05510 0.79 -0.5 392,689 - HMPREF1078_RS05510 0.79 -1.5 392,903 - -2.9 392,903 - +0.1 392,903 - -1.9 392,904 + -2.1 392,905 - -0.9 392,905 - -1.2 392,905 - -1.7 392,936 - -0.5 392,936 - -2.9 392,954 + -0.9 392,955 - -2.9 392,979 + -2.5 392,979 + -1.9 392,979 + -1.9 392,980 - -0.9 392,980 - -1.7 392,999 + -3.1 393,010 + +1.1 393,010 + -0.9 393,010 + -0.5 393,015 + -2.6 393,016 - -0.9 393,016 - -0.9 393,020 + -1.7 393,020 + -0.9 393,050 - -1.5 393,050 - -3.2 393,057 + -2.7 393,057 + -0.9 393,057 + -2.4 393,058 - -0.9 393,059 + +1.1 393,059 + +1.1 393,060 - -2.2 393,070 + -2.2 393,070 + -1.9 393,071 - -2.4 393,072 + -0.9 393,073 - -2.2 393,074 + -3.2 393,075 + +0.1 393,075 + -1.9 393,076 - -1.2 393,076 - -2.2 393,079 + +0.1 393,079 + -0.3 393,079 + -2.1 393,080 - -1.9 393,080 - -0.5 393,251 + HMPREF1078_RS05515 0.17 -2.9 393,276 - HMPREF1078_RS05515 0.20 -1.7 393,307 - HMPREF1078_RS05515 0.23 +1.1 393,324 - HMPREF1078_RS05515 0.24 -0.5 393,324 - HMPREF1078_RS05515 0.24 -1.5 393,346 + HMPREF1078_RS05515 0.26 -1.9 393,346 + HMPREF1078_RS05515 0.26 -1.9 393,346 + HMPREF1078_RS05515 0.26 -3.5 393,347 - HMPREF1078_RS05515 0.26 -1.7 393,347 - HMPREF1078_RS05515 0.26 -1.5 393,348 + HMPREF1078_RS05515 0.26 -0.9 393,348 + HMPREF1078_RS05515 0.26 +0.1 393,348 + HMPREF1078_RS05515 0.26 -1.9 393,348 + HMPREF1078_RS05515 0.26 -1.7 393,349 - HMPREF1078_RS05515 0.26 -2.8 393,349 - HMPREF1078_RS05515 0.26 -0.5 393,349 - HMPREF1078_RS05515 0.26 -0.5 393,351 + HMPREF1078_RS05515 0.27 -2.4 393,351 + HMPREF1078_RS05515 0.27 -2.1 393,433 - HMPREF1078_RS05515 0.34 -1.9 393,439 - HMPREF1078_RS05515 0.35 -1.7 393,510 - HMPREF1078_RS05515 0.41 -1.2 393,601 - HMPREF1078_RS05515 0.50 -1.7 393,601 - HMPREF1078_RS05515 0.50 -2.8 393,601 - HMPREF1078_RS05515 0.50 -2.8 393,603 + HMPREF1078_RS05515 0.50 -0.5 393,604 - HMPREF1078_RS05515 0.50 -1.9 393,607 + HMPREF1078_RS05515 0.50 -2.4 393,607 + HMPREF1078_RS05515 0.50 -2.2 393,608 - HMPREF1078_RS05515 0.50 -1.7 393,608 - HMPREF1078_RS05515 0.50 +0.1 393,608 - HMPREF1078_RS05515 0.50 -2.6 393,621 + HMPREF1078_RS05515 0.51 -4.0 393,750 + HMPREF1078_RS05515 0.63 -2.6 393,751 - HMPREF1078_RS05515 0.63 -2.5 393,753 - HMPREF1078_RS05515 0.63 -1.9 393,753 - HMPREF1078_RS05515 0.63 -1.2 393,765 + HMPREF1078_RS05515 0.65 -1.2 393,766 - HMPREF1078_RS05515 0.65 -1.7 393,766 - HMPREF1078_RS05515 0.65 +0.1 393,767 + HMPREF1078_RS05515 0.65 -0.9 393,768 - HMPREF1078_RS05515 0.65 +1.1 393,768 - HMPREF1078_RS05515 0.65 -2.2 393,845 + HMPREF1078_RS05515 0.72 -2.2 394,001 + HMPREF1078_RS05515 0.86 -5.6 394,001 + HMPREF1078_RS05515 0.86 -3.3 394,001 + HMPREF1078_RS05515 0.86 -0.1 394,135 + -1.4 394,159 + -1.6 394,159 + -1.1 394,191 + +0.2 394,217 - -2.5 394,222 - -0.3 394,222 - +0.9 394,222 - +0.3 394,222 - +0.5 394,232 + -2.1 394,260 + -0.3 394,260 + -1.9 394,260 + +0.1 394,261 - -0.3 394,261 - +0.7 394,261 - -1.8 394,261 - -0.5 394,261 - +0.2 394,261 - +2.1 394,264 + -1.2 394,264 + -0.9 394,265 - -1.7 394,265 - +0.8 394,265 - -0.7 394,265 - -1.0 394,265 - +2.1 394,383 + +2.1 394,383 + -0.9 394,384 - +0.9 394,423 + +0.3 394,423 + -1.8 394,423 + -1.9 394,423 + -0.6 394,424 - -1.8 394,424 - -2.9 394,424 - -1.9 394,424 - -0.2 394,424 - -0.5 394,424 - -2.6 394,430 + +0.5 394,431 - -1.1 394,441 - -1.0 394,610 + HMPREF1078_RS05520 0.13 +0.8 394,610 + HMPREF1078_RS05520 0.13 +1.7 394,611 - HMPREF1078_RS05520 0.14 +0.3 394,611 - HMPREF1078_RS05520 0.14 +0.1 394,611 - HMPREF1078_RS05520 0.14 -0.7 394,611 - HMPREF1078_RS05520 0.14 +0.5 394,657 - HMPREF1078_RS05520 0.15 +1.1 394,705 + HMPREF1078_RS05520 0.17 -0.3 394,705 + HMPREF1078_RS05520 0.17 -0.8 394,705 + HMPREF1078_RS05520 0.17 +1.1 394,706 - HMPREF1078_RS05520 0.17 -0.2 394,762 + HMPREF1078_RS05520 0.19 -1.0 394,789 + HMPREF1078_RS05520 0.20 +0.1 394,806 + HMPREF1078_RS05520 0.21 -3.3 394,807 - HMPREF1078_RS05520 0.21 -0.0 394,827 + HMPREF1078_RS05520 0.22 -0.9 394,827 + HMPREF1078_RS05520 0.22 -1.9 394,827 + HMPREF1078_RS05520 0.22 -1.1 394,828 - HMPREF1078_RS05520 0.22 -0.4 394,828 - HMPREF1078_RS05520 0.22 -1.6 394,828 - HMPREF1078_RS05520 0.22 +0.5 394,828 - HMPREF1078_RS05520 0.22 +1.2 394,828 - HMPREF1078_RS05520 0.22 -0.5 394,829 + HMPREF1078_RS05520 0.22 -0.1 394,829 + HMPREF1078_RS05520 0.22 -1.2 394,830 - HMPREF1078_RS05520 0.22 +0.6 394,876 - HMPREF1078_RS05520 0.23 +0.0 394,917 + HMPREF1078_RS05520 0.25 +0.5 394,918 - HMPREF1078_RS05520 0.25 -2.4 394,918 - HMPREF1078_RS05520 0.25 -1.5 394,918 - HMPREF1078_RS05520 0.25 -2.3 394,974 - HMPREF1078_RS05520 0.27 -0.5 395,022 + HMPREF1078_RS05520 0.29 +0.1 395,022 + HMPREF1078_RS05520 0.29 -0.1 395,022 + HMPREF1078_RS05520 0.29 -0.8 395,023 - HMPREF1078_RS05520 0.29 -0.8 395,023 - HMPREF1078_RS05520 0.29 +0.1 395,063 - HMPREF1078_RS05520 0.31 -0.3 395,139 + HMPREF1078_RS05520 0.33 -2.2 395,140 - HMPREF1078_RS05520 0.33 -0.5 395,140 - HMPREF1078_RS05520 0.33 -2.7 395,140 - HMPREF1078_RS05520 0.33 -2.3 395,146 + HMPREF1078_RS05520 0.34 -2.1 395,147 - HMPREF1078_RS05520 0.34 -0.9
Or see this region's nucleotide sequence