Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS05485 and HMPREF1078_RS05490 are separated by 73 nucleotides HMPREF1078_RS05490 and HMPREF1078_RS05495 are separated by 111 nucleotides HMPREF1078_RS05495 and HMPREF1078_RS05500 are separated by 3 nucleotides
HMPREF1078_RS05485: HMPREF1078_RS05485 - cob(I)yrinic acid a,c-diamide adenosyltransferase, at 386,966 to 387,529
_RS05485
HMPREF1078_RS05490: HMPREF1078_RS05490 - DUF2795 domain-containing protein, at 387,603 to 387,824
_RS05490
HMPREF1078_RS05495: HMPREF1078_RS05495 - type IX secretion system membrane protein PorP/SprF, at 387,936 to 388,886
_RS05495
HMPREF1078_RS05500: HMPREF1078_RS05500 - SUMF1/EgtB/PvdO family nonheme iron enzyme, at 388,890 to 390,317
_RS05500
Position (kb) 387
388
389 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 386.939 kb on + strand at 386.939 kb on + strand at 386.940 kb on - strand at 386.940 kb on - strand at 386.953 kb on - strand at 386.958 kb on - strand at 386.966 kb on - strand at 386.982 kb on + strand at 386.983 kb on - strand at 386.983 kb on - strand at 386.983 kb on - strand at 386.984 kb on + strand at 386.984 kb on + strand at 387.018 kb on + strand at 387.019 kb on - strand at 387.066 kb on - strand, within HMPREF1078_RS05485 at 387.070 kb on + strand, within HMPREF1078_RS05485 at 387.071 kb on - strand, within HMPREF1078_RS05485 at 387.183 kb on - strand, within HMPREF1078_RS05485 at 387.183 kb on - strand, within HMPREF1078_RS05485 at 387.220 kb on - strand, within HMPREF1078_RS05485 at 387.386 kb on + strand, within HMPREF1078_RS05485 at 387.387 kb on - strand, within HMPREF1078_RS05485 at 387.387 kb on - strand, within HMPREF1078_RS05485 at 387.472 kb on + strand, within HMPREF1078_RS05485 at 387.483 kb on + strand at 387.491 kb on - strand at 387.527 kb on + strand at 387.527 kb on + strand at 387.822 kb on + strand at 387.823 kb on - strand at 387.823 kb on - strand at 387.840 kb on + strand at 387.840 kb on + strand at 387.841 kb on - strand at 387.841 kb on - strand at 387.853 kb on + strand at 387.874 kb on - strand at 387.935 kb on + strand at 387.935 kb on + strand at 387.956 kb on + strand at 387.956 kb on + strand at 388.044 kb on - strand, within HMPREF1078_RS05495 at 388.053 kb on + strand, within HMPREF1078_RS05495 at 388.104 kb on + strand, within HMPREF1078_RS05495 at 388.104 kb on + strand, within HMPREF1078_RS05495 at 388.105 kb on - strand, within HMPREF1078_RS05495 at 388.229 kb on + strand, within HMPREF1078_RS05495 at 388.229 kb on + strand, within HMPREF1078_RS05495 at 388.229 kb on + strand, within HMPREF1078_RS05495 at 388.229 kb on + strand, within HMPREF1078_RS05495 at 388.230 kb on - strand, within HMPREF1078_RS05495 at 388.249 kb on - strand, within HMPREF1078_RS05495 at 388.255 kb on - strand, within HMPREF1078_RS05495 at 388.255 kb on - strand, within HMPREF1078_RS05495 at 388.434 kb on + strand, within HMPREF1078_RS05495 at 388.495 kb on + strand, within HMPREF1078_RS05495 at 388.518 kb on + strand, within HMPREF1078_RS05495 at 388.551 kb on + strand, within HMPREF1078_RS05495 at 388.578 kb on + strand, within HMPREF1078_RS05495 at 388.579 kb on - strand, within HMPREF1078_RS05495 at 388.579 kb on - strand, within HMPREF1078_RS05495 at 388.585 kb on + strand, within HMPREF1078_RS05495 at 388.585 kb on + strand, within HMPREF1078_RS05495 at 388.585 kb on + strand, within HMPREF1078_RS05495 at 388.597 kb on + strand, within HMPREF1078_RS05495 at 388.598 kb on - strand, within HMPREF1078_RS05495 at 388.637 kb on - strand, within HMPREF1078_RS05495 at 388.653 kb on + strand, within HMPREF1078_RS05495 at 388.653 kb on + strand, within HMPREF1078_RS05495 at 388.654 kb on - strand, within HMPREF1078_RS05495 at 388.656 kb on - strand, within HMPREF1078_RS05495 at 388.656 kb on - strand, within HMPREF1078_RS05495 at 388.658 kb on + strand, within HMPREF1078_RS05495 at 388.659 kb on - strand, within HMPREF1078_RS05495 at 388.660 kb on - strand, within HMPREF1078_RS05495 at 388.714 kb on + strand, within HMPREF1078_RS05495 at 388.715 kb on - strand, within HMPREF1078_RS05495 at 388.741 kb on + strand, within HMPREF1078_RS05495 at 388.741 kb on + strand, within HMPREF1078_RS05495 at 388.746 kb on + strand, within HMPREF1078_RS05495 at 388.746 kb on + strand, within HMPREF1078_RS05495 at 388.747 kb on - strand, within HMPREF1078_RS05495 at 388.753 kb on - strand, within HMPREF1078_RS05495 at 388.769 kb on + strand, within HMPREF1078_RS05495 at 388.770 kb on - strand, within HMPREF1078_RS05495 at 388.814 kb on - strand at 388.821 kb on + strand at 388.821 kb on + strand at 388.821 kb on + strand at 388.865 kb on + strand at 388.865 kb on + strand at 388.866 kb on - strand at 388.874 kb on - strand at 388.877 kb on + strand at 388.877 kb on + strand at 388.877 kb on + strand at 388.878 kb on - strand at 388.878 kb on - strand at 388.879 kb on + strand at 388.879 kb on + strand at 388.879 kb on + strand at 388.880 kb on - strand at 388.883 kb on - strand at 388.883 kb on - strand at 388.883 kb on - strand at 388.884 kb on + strand at 388.884 kb on + strand at 388.884 kb on + strand at 388.884 kb on + strand at 388.884 kb on + strand at 388.884 kb on + strand at 388.884 kb on + strand at 388.884 kb on + strand at 388.884 kb on + strand at 388.885 kb on - strand at 388.885 kb on - strand at 388.885 kb on - strand at 388.885 kb on - strand at 388.885 kb on - strand at 388.885 kb on - strand at 388.885 kb on - strand at 388.885 kb on - strand at 388.885 kb on - strand at 388.885 kb on - strand at 388.885 kb on - strand at 388.885 kb on - strand at 388.887 kb on + strand at 388.887 kb on + strand at 388.888 kb on - strand at 388.888 kb on - strand at 388.888 kb on - strand at 388.888 kb on - strand at 388.890 kb on - strand at 388.907 kb on - strand at 388.907 kb on - strand at 388.907 kb on - strand at 388.907 kb on - strand at 388.907 kb on - strand at 388.907 kb on - strand at 388.909 kb on + strand at 388.931 kb on + strand at 388.931 kb on + strand at 388.931 kb on + strand at 388.931 kb on - strand at 388.981 kb on + strand at 389.155 kb on - strand, within HMPREF1078_RS05500 at 389.218 kb on - strand, within HMPREF1078_RS05500 at 389.252 kb on + strand, within HMPREF1078_RS05500 at 389.253 kb on - strand, within HMPREF1078_RS05500 at 389.349 kb on + strand, within HMPREF1078_RS05500 at 389.349 kb on + strand, within HMPREF1078_RS05500 at 389.403 kb on + strand, within HMPREF1078_RS05500 at 389.419 kb on - strand, within HMPREF1078_RS05500 at 389.426 kb on + strand, within HMPREF1078_RS05500 at 389.426 kb on + strand, within HMPREF1078_RS05500 at 389.426 kb on + strand, within HMPREF1078_RS05500 at 389.426 kb on + strand, within HMPREF1078_RS05500 at 389.427 kb on - strand, within HMPREF1078_RS05500 at 389.427 kb on - strand, within HMPREF1078_RS05500 at 389.427 kb on - strand, within HMPREF1078_RS05500 at 389.478 kb on - strand, within HMPREF1078_RS05500 at 389.535 kb on + strand, within HMPREF1078_RS05500 at 389.535 kb on + strand, within HMPREF1078_RS05500 at 389.624 kb on + strand, within HMPREF1078_RS05500 at 389.625 kb on - strand, within HMPREF1078_RS05500 at 389.629 kb on - strand, within HMPREF1078_RS05500 at 389.682 kb on + strand, within HMPREF1078_RS05500 at 389.682 kb on + strand, within HMPREF1078_RS05500 at 389.682 kb on + strand, within HMPREF1078_RS05500 at 389.682 kb on + strand, within HMPREF1078_RS05500 at 389.683 kb on - strand, within HMPREF1078_RS05500 at 389.683 kb on - strand, within HMPREF1078_RS05500 at 389.684 kb on + strand, within HMPREF1078_RS05500 at 389.684 kb on + strand, within HMPREF1078_RS05500 at 389.684 kb on + strand, within HMPREF1078_RS05500 at 389.684 kb on + strand, within HMPREF1078_RS05500 at 389.685 kb on - strand, within HMPREF1078_RS05500 at 389.685 kb on - strand, within HMPREF1078_RS05500 at 389.685 kb on - strand, within HMPREF1078_RS05500 at 389.685 kb on - strand, within HMPREF1078_RS05500 at 389.690 kb on + strand, within HMPREF1078_RS05500 at 389.690 kb on + strand, within HMPREF1078_RS05500 at 389.690 kb on + strand, within HMPREF1078_RS05500 at 389.690 kb on + strand, within HMPREF1078_RS05500 at 389.690 kb on + strand, within HMPREF1078_RS05500 at 389.690 kb on + strand, within HMPREF1078_RS05500 at 389.690 kb on + strand, within HMPREF1078_RS05500 at 389.691 kb on - strand, within HMPREF1078_RS05500 at 389.691 kb on - strand, within HMPREF1078_RS05500 at 389.691 kb on - strand, within HMPREF1078_RS05500 at 389.691 kb on - strand, within HMPREF1078_RS05500 at 389.691 kb on - strand, within HMPREF1078_RS05500 at 389.691 kb on - strand, within HMPREF1078_RS05500 at 389.694 kb on + strand, within HMPREF1078_RS05500 at 389.695 kb on - strand, within HMPREF1078_RS05500 at 389.731 kb on + strand, within HMPREF1078_RS05500 at 389.731 kb on + strand, within HMPREF1078_RS05500 at 389.768 kb on - strand, within HMPREF1078_RS05500 at 389.859 kb on + strand, within HMPREF1078_RS05500 at 389.859 kb on + strand, within HMPREF1078_RS05500
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day4 remove 386,939 + +0.5 386,939 + +0.1 386,940 - -1.2 386,940 - -0.5 386,953 - -1.2 386,958 - -1.5 386,966 - +0.1 386,982 + -2.6 386,983 - -3.5 386,983 - +0.1 386,983 - -2.5 386,984 + -2.9 386,984 + +1.1 387,018 + -1.5 387,019 - -2.1 387,066 - HMPREF1078_RS05485 0.18 -1.7 387,070 + HMPREF1078_RS05485 0.18 -0.9 387,071 - HMPREF1078_RS05485 0.19 -1.4 387,183 - HMPREF1078_RS05485 0.38 -1.5 387,183 - HMPREF1078_RS05485 0.38 -1.2 387,220 - HMPREF1078_RS05485 0.45 -1.9 387,386 + HMPREF1078_RS05485 0.74 -2.6 387,387 - HMPREF1078_RS05485 0.75 -1.9 387,387 - HMPREF1078_RS05485 0.75 -0.1 387,472 + HMPREF1078_RS05485 0.90 -0.5 387,483 + +0.2 387,491 - -3.1 387,527 + -0.3 387,527 + -2.4 387,822 + +1.1 387,823 - -0.4 387,823 - -1.4 387,840 + +2.0 387,840 + -1.1 387,841 - +0.8 387,841 - +1.8 387,853 + +0.2 387,874 - -0.1 387,935 + -0.2 387,935 + -0.2 387,956 + -1.5 387,956 + -3.1 388,044 - HMPREF1078_RS05495 0.11 -2.7 388,053 + HMPREF1078_RS05495 0.12 -3.7 388,104 + HMPREF1078_RS05495 0.18 +0.1 388,104 + HMPREF1078_RS05495 0.18 -0.9 388,105 - HMPREF1078_RS05495 0.18 -1.5 388,229 + HMPREF1078_RS05495 0.31 -0.9 388,229 + HMPREF1078_RS05495 0.31 -0.5 388,229 + HMPREF1078_RS05495 0.31 -0.5 388,229 + HMPREF1078_RS05495 0.31 -1.5 388,230 - HMPREF1078_RS05495 0.31 -1.2 388,249 - HMPREF1078_RS05495 0.33 -0.9 388,255 - HMPREF1078_RS05495 0.34 -2.6 388,255 - HMPREF1078_RS05495 0.34 -2.8 388,434 + HMPREF1078_RS05495 0.52 -0.9 388,495 + HMPREF1078_RS05495 0.59 +0.1 388,518 + HMPREF1078_RS05495 0.61 -2.1 388,551 + HMPREF1078_RS05495 0.65 -1.7 388,578 + HMPREF1078_RS05495 0.68 -0.9 388,579 - HMPREF1078_RS05495 0.68 +1.1 388,579 - HMPREF1078_RS05495 0.68 -2.2 388,585 + HMPREF1078_RS05495 0.68 +0.1 388,585 + HMPREF1078_RS05495 0.68 -1.9 388,585 + HMPREF1078_RS05495 0.68 -1.5 388,597 + HMPREF1078_RS05495 0.70 -1.9 388,598 - HMPREF1078_RS05495 0.70 -3.6 388,637 - HMPREF1078_RS05495 0.74 -0.9 388,653 + HMPREF1078_RS05495 0.75 -2.5 388,653 + HMPREF1078_RS05495 0.75 -2.4 388,654 - HMPREF1078_RS05495 0.75 +1.1 388,656 - HMPREF1078_RS05495 0.76 -2.1 388,656 - HMPREF1078_RS05495 0.76 -2.2 388,658 + HMPREF1078_RS05495 0.76 -0.9 388,659 - HMPREF1078_RS05495 0.76 -3.3 388,660 - HMPREF1078_RS05495 0.76 -2.1 388,714 + HMPREF1078_RS05495 0.82 -1.7 388,715 - HMPREF1078_RS05495 0.82 -1.5 388,741 + HMPREF1078_RS05495 0.85 -1.5 388,741 + HMPREF1078_RS05495 0.85 -1.5 388,746 + HMPREF1078_RS05495 0.85 -2.1 388,746 + HMPREF1078_RS05495 0.85 -0.9 388,747 - HMPREF1078_RS05495 0.85 +0.1 388,753 - HMPREF1078_RS05495 0.86 -2.4 388,769 + HMPREF1078_RS05495 0.88 -3.1 388,770 - HMPREF1078_RS05495 0.88 +0.1 388,814 - -1.2 388,821 + +0.1 388,821 + -1.2 388,821 + -2.5 388,865 + -2.4 388,865 + -2.6 388,866 - +1.1 388,874 - -1.7 388,877 + -1.9 388,877 + -2.5 388,877 + -1.5 388,878 - -0.9 388,878 - -1.2 388,879 + -2.7 388,879 + -0.9 388,879 + -0.9 388,880 - -1.5 388,883 - -2.4 388,883 - -1.2 388,883 - +0.1 388,884 + -1.6 388,884 + -2.6 388,884 + -2.9 388,884 + +0.1 388,884 + -1.9 388,884 + -2.5 388,884 + -2.1 388,884 + -0.3 388,884 + -2.1 388,885 - +0.9 388,885 - +1.1 388,885 - -0.5 388,885 - +0.1 388,885 - -1.5 388,885 - +0.1 388,885 - -0.9 388,885 - -2.7 388,885 - -0.9 388,885 - -0.5 388,885 - -1.7 388,885 - -1.5 388,887 + -1.2 388,887 + -2.2 388,888 - -1.2 388,888 - -2.6 388,888 - -0.5 388,888 - -0.9 388,890 - -1.5 388,907 - -2.6 388,907 - -1.5 388,907 - +1.1 388,907 - -1.7 388,907 - -1.7 388,907 - +1.1 388,909 + -2.4 388,931 + -1.1 388,931 + -0.5 388,931 + -1.5 388,931 - +1.1 388,981 + +0.1 389,155 - HMPREF1078_RS05500 0.19 -0.5 389,218 - HMPREF1078_RS05500 0.23 -2.2 389,252 + HMPREF1078_RS05500 0.25 -2.8 389,253 - HMPREF1078_RS05500 0.25 -2.2 389,349 + HMPREF1078_RS05500 0.32 -2.6 389,349 + HMPREF1078_RS05500 0.32 -2.2 389,403 + HMPREF1078_RS05500 0.36 -1.9 389,419 - HMPREF1078_RS05500 0.37 -2.6 389,426 + HMPREF1078_RS05500 0.38 +0.1 389,426 + HMPREF1078_RS05500 0.38 -2.8 389,426 + HMPREF1078_RS05500 0.38 +1.1 389,426 + HMPREF1078_RS05500 0.38 -2.4 389,427 - HMPREF1078_RS05500 0.38 +0.1 389,427 - HMPREF1078_RS05500 0.38 -0.5 389,427 - HMPREF1078_RS05500 0.38 +0.1 389,478 - HMPREF1078_RS05500 0.41 -1.2 389,535 + HMPREF1078_RS05500 0.45 -2.9 389,535 + HMPREF1078_RS05500 0.45 -2.6 389,624 + HMPREF1078_RS05500 0.51 -0.5 389,625 - HMPREF1078_RS05500 0.51 -1.7 389,629 - HMPREF1078_RS05500 0.52 -2.2 389,682 + HMPREF1078_RS05500 0.55 +0.1 389,682 + HMPREF1078_RS05500 0.55 -0.5 389,682 + HMPREF1078_RS05500 0.55 -1.7 389,682 + HMPREF1078_RS05500 0.55 -1.5 389,683 - HMPREF1078_RS05500 0.56 -1.9 389,683 - HMPREF1078_RS05500 0.56 -1.9 389,684 + HMPREF1078_RS05500 0.56 -3.2 389,684 + HMPREF1078_RS05500 0.56 -1.2 389,684 + HMPREF1078_RS05500 0.56 -1.7 389,684 + HMPREF1078_RS05500 0.56 -1.7 389,685 - HMPREF1078_RS05500 0.56 -1.7 389,685 - HMPREF1078_RS05500 0.56 -1.2 389,685 - HMPREF1078_RS05500 0.56 -1.9 389,685 - HMPREF1078_RS05500 0.56 -2.4 389,690 + HMPREF1078_RS05500 0.56 -3.2 389,690 + HMPREF1078_RS05500 0.56 -1.7 389,690 + HMPREF1078_RS05500 0.56 -3.1 389,690 + HMPREF1078_RS05500 0.56 -1.5 389,690 + HMPREF1078_RS05500 0.56 -0.5 389,690 + HMPREF1078_RS05500 0.56 -2.4 389,690 + HMPREF1078_RS05500 0.56 -2.1 389,691 - HMPREF1078_RS05500 0.56 -1.2 389,691 - HMPREF1078_RS05500 0.56 -2.7 389,691 - HMPREF1078_RS05500 0.56 -1.2 389,691 - HMPREF1078_RS05500 0.56 -0.9 389,691 - HMPREF1078_RS05500 0.56 -1.2 389,691 - HMPREF1078_RS05500 0.56 +0.1 389,694 + HMPREF1078_RS05500 0.56 -0.9 389,695 - HMPREF1078_RS05500 0.56 -1.2 389,731 + HMPREF1078_RS05500 0.59 -0.9 389,731 + HMPREF1078_RS05500 0.59 -0.9 389,768 - HMPREF1078_RS05500 0.61 -1.2 389,859 + HMPREF1078_RS05500 0.68 -1.7 389,859 + HMPREF1078_RS05500 0.68 -3.0
Or see this region's nucleotide sequence