Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS05480 and HMPREF1078_RS05485 are separated by 599 nucleotides HMPREF1078_RS05485 and HMPREF1078_RS05490 are separated by 73 nucleotides HMPREF1078_RS05490 and HMPREF1078_RS05495 are separated by 111 nucleotides
HMPREF1078_RS05480: HMPREF1078_RS05480 - hypothetical protein, at 385,575 to 386,366
_RS05480
HMPREF1078_RS05485: HMPREF1078_RS05485 - cob(I)yrinic acid a,c-diamide adenosyltransferase, at 386,966 to 387,529
_RS05485
HMPREF1078_RS05490: HMPREF1078_RS05490 - DUF2795 domain-containing protein, at 387,603 to 387,824
_RS05490
HMPREF1078_RS05495: HMPREF1078_RS05495 - type IX secretion system membrane protein PorP/SprF, at 387,936 to 388,886
_RS05495
Position (kb) 386
387
388 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 386.372 kb on + strand at 386.383 kb on - strand at 386.405 kb on + strand at 386.406 kb on - strand at 386.407 kb on + strand at 386.463 kb on + strand at 386.467 kb on - strand at 386.484 kb on - strand at 386.498 kb on - strand at 386.508 kb on + strand at 386.509 kb on - strand at 386.509 kb on - strand at 386.528 kb on + strand at 386.532 kb on - strand at 386.532 kb on - strand at 386.541 kb on + strand at 386.551 kb on - strand at 386.562 kb on + strand at 386.636 kb on + strand at 386.648 kb on + strand at 386.680 kb on + strand at 386.692 kb on + strand at 386.696 kb on + strand at 386.696 kb on + strand at 386.697 kb on - strand at 386.701 kb on - strand at 386.704 kb on + strand at 386.705 kb on - strand at 386.705 kb on - strand at 386.707 kb on + strand at 386.707 kb on + strand at 386.707 kb on + strand at 386.708 kb on - strand at 386.708 kb on - strand at 386.708 kb on - strand at 386.747 kb on + strand at 386.748 kb on - strand at 386.820 kb on - strand at 386.896 kb on + strand at 386.896 kb on + strand at 386.897 kb on - strand at 386.901 kb on + strand at 386.939 kb on + strand at 386.939 kb on + strand at 386.940 kb on - strand at 386.940 kb on - strand at 386.953 kb on - strand at 386.958 kb on - strand at 386.966 kb on - strand at 386.982 kb on + strand at 386.983 kb on - strand at 386.983 kb on - strand at 386.983 kb on - strand at 386.984 kb on + strand at 386.984 kb on + strand at 387.018 kb on + strand at 387.019 kb on - strand at 387.066 kb on - strand, within HMPREF1078_RS05485 at 387.070 kb on + strand, within HMPREF1078_RS05485 at 387.071 kb on - strand, within HMPREF1078_RS05485 at 387.183 kb on - strand, within HMPREF1078_RS05485 at 387.183 kb on - strand, within HMPREF1078_RS05485 at 387.220 kb on - strand, within HMPREF1078_RS05485 at 387.386 kb on + strand, within HMPREF1078_RS05485 at 387.387 kb on - strand, within HMPREF1078_RS05485 at 387.387 kb on - strand, within HMPREF1078_RS05485 at 387.472 kb on + strand, within HMPREF1078_RS05485 at 387.483 kb on + strand at 387.491 kb on - strand at 387.527 kb on + strand at 387.527 kb on + strand at 387.822 kb on + strand at 387.823 kb on - strand at 387.823 kb on - strand at 387.840 kb on + strand at 387.840 kb on + strand at 387.841 kb on - strand at 387.841 kb on - strand at 387.853 kb on + strand at 387.874 kb on - strand at 387.935 kb on + strand at 387.935 kb on + strand at 387.956 kb on + strand at 387.956 kb on + strand at 388.044 kb on - strand, within HMPREF1078_RS05495 at 388.053 kb on + strand, within HMPREF1078_RS05495 at 388.104 kb on + strand, within HMPREF1078_RS05495 at 388.104 kb on + strand, within HMPREF1078_RS05495 at 388.105 kb on - strand, within HMPREF1078_RS05495 at 388.229 kb on + strand, within HMPREF1078_RS05495 at 388.229 kb on + strand, within HMPREF1078_RS05495 at 388.229 kb on + strand, within HMPREF1078_RS05495 at 388.229 kb on + strand, within HMPREF1078_RS05495 at 388.230 kb on - strand, within HMPREF1078_RS05495 at 388.249 kb on - strand, within HMPREF1078_RS05495 at 388.255 kb on - strand, within HMPREF1078_RS05495 at 388.255 kb on - strand, within HMPREF1078_RS05495 at 388.434 kb on + strand, within HMPREF1078_RS05495 at 388.495 kb on + strand, within HMPREF1078_RS05495 at 388.518 kb on + strand, within HMPREF1078_RS05495
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day4 remove 386,372 + +0.8 386,383 - +1.1 386,405 + -1.2 386,406 - +0.3 386,407 + -0.7 386,463 + +1.8 386,467 - -0.3 386,484 - +1.3 386,498 - +2.3 386,508 + -1.7 386,509 - -0.7 386,509 - -1.5 386,528 + +0.5 386,532 - +1.3 386,532 - -1.7 386,541 + -2.5 386,551 - +2.8 386,562 + -1.8 386,636 + +0.7 386,648 + -1.4 386,680 + +0.9 386,692 + +0.2 386,696 + +0.8 386,696 + -1.8 386,697 - -0.7 386,701 - +0.6 386,704 + +2.5 386,705 - -1.2 386,705 - +0.4 386,707 + +0.2 386,707 + +1.1 386,707 + +1.8 386,708 - +0.7 386,708 - +1.1 386,708 - +0.8 386,747 + +2.9 386,748 - -1.0 386,820 - -0.9 386,896 + -0.9 386,896 + +0.2 386,897 - -1.9 386,901 + -0.9 386,939 + +0.5 386,939 + +0.1 386,940 - -1.2 386,940 - -0.5 386,953 - -1.2 386,958 - -1.5 386,966 - +0.1 386,982 + -2.6 386,983 - -3.5 386,983 - +0.1 386,983 - -2.5 386,984 + -2.9 386,984 + +1.1 387,018 + -1.5 387,019 - -2.1 387,066 - HMPREF1078_RS05485 0.18 -1.7 387,070 + HMPREF1078_RS05485 0.18 -0.9 387,071 - HMPREF1078_RS05485 0.19 -1.4 387,183 - HMPREF1078_RS05485 0.38 -1.5 387,183 - HMPREF1078_RS05485 0.38 -1.2 387,220 - HMPREF1078_RS05485 0.45 -1.9 387,386 + HMPREF1078_RS05485 0.74 -2.6 387,387 - HMPREF1078_RS05485 0.75 -1.9 387,387 - HMPREF1078_RS05485 0.75 -0.1 387,472 + HMPREF1078_RS05485 0.90 -0.5 387,483 + +0.2 387,491 - -3.1 387,527 + -0.3 387,527 + -2.4 387,822 + +1.1 387,823 - -0.4 387,823 - -1.4 387,840 + +2.0 387,840 + -1.1 387,841 - +0.8 387,841 - +1.8 387,853 + +0.2 387,874 - -0.1 387,935 + -0.2 387,935 + -0.2 387,956 + -1.5 387,956 + -3.1 388,044 - HMPREF1078_RS05495 0.11 -2.7 388,053 + HMPREF1078_RS05495 0.12 -3.7 388,104 + HMPREF1078_RS05495 0.18 +0.1 388,104 + HMPREF1078_RS05495 0.18 -0.9 388,105 - HMPREF1078_RS05495 0.18 -1.5 388,229 + HMPREF1078_RS05495 0.31 -0.9 388,229 + HMPREF1078_RS05495 0.31 -0.5 388,229 + HMPREF1078_RS05495 0.31 -0.5 388,229 + HMPREF1078_RS05495 0.31 -1.5 388,230 - HMPREF1078_RS05495 0.31 -1.2 388,249 - HMPREF1078_RS05495 0.33 -0.9 388,255 - HMPREF1078_RS05495 0.34 -2.6 388,255 - HMPREF1078_RS05495 0.34 -2.8 388,434 + HMPREF1078_RS05495 0.52 -0.9 388,495 + HMPREF1078_RS05495 0.59 +0.1 388,518 + HMPREF1078_RS05495 0.61 -2.1
Or see this region's nucleotide sequence