Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS05270 and HMPREF1078_RS05275 are separated by 140 nucleotides HMPREF1078_RS05275 and HMPREF1078_RS05280 are separated by 189 nucleotides HMPREF1078_RS05280 and HMPREF1078_RS05285 are separated by 316 nucleotides
HMPREF1078_RS05270: HMPREF1078_RS05270 - TrpB-like pyridoxal phosphate-dependent enzyme, at 324,637 to 326,001
_RS05270
HMPREF1078_RS05275: HMPREF1078_RS05275 - DUF3836 domain-containing protein, at 326,142 to 326,552
_RS05275
HMPREF1078_RS05280: HMPREF1078_RS05280 - helix-turn-helix transcriptional regulator, at 326,742 to 326,954
_RS05280
HMPREF1078_RS05285: HMPREF1078_RS05285 - DUF2975 domain-containing protein, at 327,271 to 327,936
_RS05285
Position (kb) 326
327 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 325.815 kb on + strand, within HMPREF1078_RS05270 at 325.857 kb on + strand, within HMPREF1078_RS05270 at 325.857 kb on + strand, within HMPREF1078_RS05270 at 325.857 kb on + strand, within HMPREF1078_RS05270 at 325.858 kb on - strand, within HMPREF1078_RS05270 at 325.939 kb on + strand at 325.939 kb on + strand at 325.939 kb on + strand at 325.995 kb on + strand at 325.995 kb on + strand at 326.011 kb on - strand at 326.011 kb on - strand at 326.011 kb on - strand at 326.071 kb on + strand at 326.120 kb on - strand at 326.126 kb on + strand at 326.126 kb on + strand at 326.127 kb on - strand at 326.127 kb on - strand at 326.131 kb on + strand at 326.136 kb on + strand at 326.136 kb on + strand at 326.137 kb on - strand at 326.137 kb on - strand at 326.140 kb on + strand at 326.140 kb on + strand at 326.141 kb on - strand at 326.141 kb on - strand at 326.141 kb on - strand at 326.143 kb on + strand at 326.143 kb on + strand at 326.143 kb on + strand at 326.144 kb on - strand at 326.144 kb on - strand at 326.144 kb on - strand at 326.161 kb on + strand at 326.162 kb on - strand at 326.162 kb on - strand at 326.184 kb on - strand, within HMPREF1078_RS05275 at 326.184 kb on - strand, within HMPREF1078_RS05275 at 326.197 kb on - strand, within HMPREF1078_RS05275 at 326.197 kb on - strand, within HMPREF1078_RS05275 at 326.197 kb on - strand, within HMPREF1078_RS05275 at 326.197 kb on - strand, within HMPREF1078_RS05275 at 326.267 kb on - strand, within HMPREF1078_RS05275 at 326.272 kb on + strand, within HMPREF1078_RS05275 at 326.272 kb on + strand, within HMPREF1078_RS05275 at 326.284 kb on + strand, within HMPREF1078_RS05275 at 326.287 kb on + strand, within HMPREF1078_RS05275 at 326.287 kb on + strand, within HMPREF1078_RS05275 at 326.287 kb on + strand, within HMPREF1078_RS05275 at 326.307 kb on - strand, within HMPREF1078_RS05275 at 326.312 kb on + strand, within HMPREF1078_RS05275 at 326.313 kb on - strand, within HMPREF1078_RS05275 at 326.313 kb on - strand, within HMPREF1078_RS05275 at 326.323 kb on + strand, within HMPREF1078_RS05275 at 326.323 kb on + strand, within HMPREF1078_RS05275 at 326.375 kb on + strand, within HMPREF1078_RS05275 at 326.376 kb on - strand, within HMPREF1078_RS05275 at 326.376 kb on - strand, within HMPREF1078_RS05275 at 326.406 kb on + strand, within HMPREF1078_RS05275 at 326.426 kb on + strand, within HMPREF1078_RS05275 at 326.432 kb on + strand, within HMPREF1078_RS05275 at 326.450 kb on + strand, within HMPREF1078_RS05275 at 326.450 kb on + strand, within HMPREF1078_RS05275 at 326.455 kb on + strand, within HMPREF1078_RS05275 at 326.455 kb on + strand, within HMPREF1078_RS05275 at 326.456 kb on - strand, within HMPREF1078_RS05275 at 326.456 kb on - strand, within HMPREF1078_RS05275 at 326.456 kb on - strand, within HMPREF1078_RS05275 at 326.456 kb on - strand, within HMPREF1078_RS05275 at 326.456 kb on - strand, within HMPREF1078_RS05275 at 326.456 kb on - strand, within HMPREF1078_RS05275 at 326.461 kb on + strand, within HMPREF1078_RS05275 at 326.461 kb on + strand, within HMPREF1078_RS05275 at 326.461 kb on + strand, within HMPREF1078_RS05275 at 326.461 kb on + strand, within HMPREF1078_RS05275 at 326.461 kb on + strand, within HMPREF1078_RS05275 at 326.461 kb on + strand, within HMPREF1078_RS05275 at 326.462 kb on - strand, within HMPREF1078_RS05275 at 326.462 kb on - strand, within HMPREF1078_RS05275 at 326.462 kb on - strand, within HMPREF1078_RS05275 at 326.462 kb on - strand, within HMPREF1078_RS05275 at 326.495 kb on + strand, within HMPREF1078_RS05275 at 326.496 kb on - strand, within HMPREF1078_RS05275 at 326.507 kb on + strand, within HMPREF1078_RS05275 at 326.508 kb on - strand, within HMPREF1078_RS05275 at 326.508 kb on - strand, within HMPREF1078_RS05275 at 326.508 kb on - strand, within HMPREF1078_RS05275 at 326.508 kb on - strand, within HMPREF1078_RS05275 at 326.508 kb on - strand, within HMPREF1078_RS05275 at 326.536 kb on - strand at 326.552 kb on + strand at 326.552 kb on + strand at 326.552 kb on + strand at 326.553 kb on - strand at 326.554 kb on + strand at 326.555 kb on - strand at 326.555 kb on - strand at 326.555 kb on - strand at 326.555 kb on - strand at 326.562 kb on - strand at 326.562 kb on - strand at 326.596 kb on + strand at 326.600 kb on + strand at 326.600 kb on + strand at 326.600 kb on + strand at 326.603 kb on + strand at 326.603 kb on + strand at 326.631 kb on - strand at 326.646 kb on - strand at 326.686 kb on + strand at 326.686 kb on + strand at 326.687 kb on - strand at 326.688 kb on + strand at 326.700 kb on + strand at 326.700 kb on + strand at 326.700 kb on + strand at 326.708 kb on + strand at 326.770 kb on - strand, within HMPREF1078_RS05280 at 326.770 kb on - strand, within HMPREF1078_RS05280 at 326.798 kb on + strand, within HMPREF1078_RS05280 at 326.828 kb on + strand, within HMPREF1078_RS05280 at 326.874 kb on - strand, within HMPREF1078_RS05280 at 326.883 kb on - strand, within HMPREF1078_RS05280 at 326.883 kb on - strand, within HMPREF1078_RS05280 at 326.940 kb on - strand at 326.947 kb on - strand at 326.948 kb on + strand at 326.982 kb on + strand at 327.063 kb on - strand at 327.075 kb on + strand at 327.075 kb on + strand at 327.078 kb on + strand at 327.078 kb on + strand at 327.081 kb on + strand at 327.081 kb on + strand at 327.081 kb on + strand at 327.082 kb on - strand at 327.083 kb on + strand at 327.083 kb on + strand at 327.083 kb on + strand at 327.086 kb on + strand at 327.086 kb on + strand at 327.087 kb on - strand at 327.087 kb on - strand at 327.104 kb on + strand at 327.122 kb on + strand at 327.122 kb on + strand at 327.131 kb on + strand at 327.153 kb on + strand at 327.158 kb on + strand at 327.190 kb on + strand at 327.202 kb on + strand at 327.206 kb on + strand at 327.228 kb on + strand at 327.272 kb on + strand at 327.439 kb on + strand, within HMPREF1078_RS05285 at 327.444 kb on + strand, within HMPREF1078_RS05285 at 327.444 kb on + strand, within HMPREF1078_RS05285 at 327.444 kb on + strand, within HMPREF1078_RS05285 at 327.445 kb on - strand, within HMPREF1078_RS05285 at 327.446 kb on + strand, within HMPREF1078_RS05285 at 327.446 kb on + strand, within HMPREF1078_RS05285 at 327.446 kb on + strand, within HMPREF1078_RS05285 at 327.446 kb on + strand, within HMPREF1078_RS05285 at 327.446 kb on + strand, within HMPREF1078_RS05285 at 327.447 kb on - strand, within HMPREF1078_RS05285 at 327.447 kb on - strand, within HMPREF1078_RS05285 at 327.447 kb on - strand, within HMPREF1078_RS05285 at 327.447 kb on - strand, within HMPREF1078_RS05285 at 327.460 kb on + strand, within HMPREF1078_RS05285 at 327.461 kb on - strand, within HMPREF1078_RS05285 at 327.505 kb on + strand, within HMPREF1078_RS05285 at 327.505 kb on + strand, within HMPREF1078_RS05285 at 327.520 kb on + strand, within HMPREF1078_RS05285 at 327.555 kb on + strand, within HMPREF1078_RS05285 at 327.577 kb on + strand, within HMPREF1078_RS05285 at 327.601 kb on + strand, within HMPREF1078_RS05285 at 327.601 kb on + strand, within HMPREF1078_RS05285 at 327.603 kb on + strand, within HMPREF1078_RS05285 at 327.613 kb on + strand, within HMPREF1078_RS05285 at 327.613 kb on + strand, within HMPREF1078_RS05285 at 327.617 kb on + strand, within HMPREF1078_RS05285 at 327.617 kb on + strand, within HMPREF1078_RS05285 at 327.618 kb on - strand, within HMPREF1078_RS05285 at 327.666 kb on + strand, within HMPREF1078_RS05285 at 327.666 kb on + strand, within HMPREF1078_RS05285 at 327.667 kb on - strand, within HMPREF1078_RS05285 at 327.667 kb on - strand, within HMPREF1078_RS05285 at 327.706 kb on + strand, within HMPREF1078_RS05285 at 327.711 kb on + strand, within HMPREF1078_RS05285 at 327.711 kb on + strand, within HMPREF1078_RS05285 at 327.742 kb on + strand, within HMPREF1078_RS05285 at 327.747 kb on + strand, within HMPREF1078_RS05285 at 327.747 kb on + strand, within HMPREF1078_RS05285 at 327.764 kb on - strand, within HMPREF1078_RS05285 at 327.777 kb on + strand, within HMPREF1078_RS05285 at 327.777 kb on + strand, within HMPREF1078_RS05285 at 327.941 kb on + strand at 327.941 kb on + strand at 327.942 kb on - strand at 327.942 kb on - strand at 327.942 kb on - strand at 327.944 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day4 remove 325,815 + HMPREF1078_RS05270 0.86 +0.1 325,857 + HMPREF1078_RS05270 0.89 -0.9 325,857 + HMPREF1078_RS05270 0.89 -0.6 325,857 + HMPREF1078_RS05270 0.89 -0.9 325,858 - HMPREF1078_RS05270 0.89 +2.1 325,939 + -1.3 325,939 + -1.7 325,939 + -1.2 325,995 + -0.9 325,995 + -1.5 326,011 - +0.2 326,011 - +0.1 326,011 - +0.6 326,071 + -1.0 326,120 - -2.4 326,126 + -1.4 326,126 + +1.6 326,127 - -1.7 326,127 - -1.2 326,131 + -1.0 326,136 + -1.2 326,136 + +1.1 326,137 - -0.0 326,137 - +0.2 326,140 + +0.1 326,140 + -1.7 326,141 - -0.1 326,141 - -0.5 326,141 - -1.5 326,143 + -1.5 326,143 + -2.0 326,143 + +0.5 326,144 - -0.3 326,144 - +0.2 326,144 - -0.4 326,161 + +0.9 326,162 - -1.7 326,162 - -1.7 326,184 - HMPREF1078_RS05275 0.10 -1.3 326,184 - HMPREF1078_RS05275 0.10 -0.4 326,197 - HMPREF1078_RS05275 0.13 -2.6 326,197 - HMPREF1078_RS05275 0.13 -1.2 326,197 - HMPREF1078_RS05275 0.13 -1.3 326,197 - HMPREF1078_RS05275 0.13 -2.0 326,267 - HMPREF1078_RS05275 0.30 -2.4 326,272 + HMPREF1078_RS05275 0.32 +2.1 326,272 + HMPREF1078_RS05275 0.32 -1.2 326,284 + HMPREF1078_RS05275 0.35 +0.5 326,287 + HMPREF1078_RS05275 0.35 +1.5 326,287 + HMPREF1078_RS05275 0.35 -0.7 326,287 + HMPREF1078_RS05275 0.35 -1.1 326,307 - HMPREF1078_RS05275 0.40 -1.2 326,312 + HMPREF1078_RS05275 0.41 -1.4 326,313 - HMPREF1078_RS05275 0.42 -0.2 326,313 - HMPREF1078_RS05275 0.42 -0.6 326,323 + HMPREF1078_RS05275 0.44 -2.1 326,323 + HMPREF1078_RS05275 0.44 -0.9 326,375 + HMPREF1078_RS05275 0.57 +0.1 326,376 - HMPREF1078_RS05275 0.57 +1.3 326,376 - HMPREF1078_RS05275 0.57 +0.1 326,406 + HMPREF1078_RS05275 0.64 -3.9 326,426 + HMPREF1078_RS05275 0.69 -0.5 326,432 + HMPREF1078_RS05275 0.71 +1.1 326,450 + HMPREF1078_RS05275 0.75 -0.9 326,450 + HMPREF1078_RS05275 0.75 +1.1 326,455 + HMPREF1078_RS05275 0.76 -2.0 326,455 + HMPREF1078_RS05275 0.76 +0.5 326,456 - HMPREF1078_RS05275 0.76 -0.0 326,456 - HMPREF1078_RS05275 0.76 -1.1 326,456 - HMPREF1078_RS05275 0.76 +0.4 326,456 - HMPREF1078_RS05275 0.76 -0.7 326,456 - HMPREF1078_RS05275 0.76 -1.2 326,456 - HMPREF1078_RS05275 0.76 +0.5 326,461 + HMPREF1078_RS05275 0.78 -0.3 326,461 + HMPREF1078_RS05275 0.78 +0.4 326,461 + HMPREF1078_RS05275 0.78 +0.1 326,461 + HMPREF1078_RS05275 0.78 -2.4 326,461 + HMPREF1078_RS05275 0.78 -0.9 326,461 + HMPREF1078_RS05275 0.78 +0.2 326,462 - HMPREF1078_RS05275 0.78 +0.6 326,462 - HMPREF1078_RS05275 0.78 +1.1 326,462 - HMPREF1078_RS05275 0.78 -1.2 326,462 - HMPREF1078_RS05275 0.78 -0.9 326,495 + HMPREF1078_RS05275 0.86 -0.8 326,496 - HMPREF1078_RS05275 0.86 +0.1 326,507 + HMPREF1078_RS05275 0.89 -0.5 326,508 - HMPREF1078_RS05275 0.89 +0.4 326,508 - HMPREF1078_RS05275 0.89 +0.1 326,508 - HMPREF1078_RS05275 0.89 -1.0 326,508 - HMPREF1078_RS05275 0.89 -0.4 326,508 - HMPREF1078_RS05275 0.89 +0.1 326,536 - -0.7 326,552 + +0.1 326,552 + -1.6 326,552 + +1.5 326,553 - +0.0 326,554 + -2.4 326,555 - -0.6 326,555 - +1.1 326,555 - -0.3 326,555 - -0.9 326,562 - -1.1 326,562 - -1.5 326,596 + +0.4 326,600 + +1.7 326,600 + -1.7 326,600 + -1.1 326,603 + -3.9 326,603 + -0.7 326,631 - -0.2 326,646 - +0.1 326,686 + -1.4 326,686 + -1.0 326,687 - -1.9 326,688 + +2.5 326,700 + +0.4 326,700 + +0.3 326,700 + +0.1 326,708 + +0.1 326,770 - HMPREF1078_RS05280 0.13 -0.5 326,770 - HMPREF1078_RS05280 0.13 -3.5 326,798 + HMPREF1078_RS05280 0.26 -1.7 326,828 + HMPREF1078_RS05280 0.40 -2.8 326,874 - HMPREF1078_RS05280 0.62 -0.7 326,883 - HMPREF1078_RS05280 0.66 -3.8 326,883 - HMPREF1078_RS05280 0.66 -0.5 326,940 - +0.1 326,947 - +0.0 326,948 + -0.3 326,982 + -2.1 327,063 - +1.1 327,075 + +0.0 327,075 + -2.0 327,078 + -1.8 327,078 + -3.2 327,081 + -2.6 327,081 + -2.1 327,081 + +1.1 327,082 - -2.5 327,083 + -1.4 327,083 + -1.8 327,083 + -4.0 327,086 + -0.5 327,086 + -0.7 327,087 - -0.5 327,087 - -1.9 327,104 + -2.5 327,122 + +0.2 327,122 + -1.8 327,131 + -1.9 327,153 + -2.0 327,158 + -2.1 327,190 + -3.1 327,202 + -1.9 327,206 + +0.1 327,228 + -2.6 327,272 + -1.0 327,439 + HMPREF1078_RS05285 0.25 -4.6 327,444 + HMPREF1078_RS05285 0.26 -0.1 327,444 + HMPREF1078_RS05285 0.26 -1.1 327,444 + HMPREF1078_RS05285 0.26 -2.2 327,445 - HMPREF1078_RS05285 0.26 -0.9 327,446 + HMPREF1078_RS05285 0.26 -2.5 327,446 + HMPREF1078_RS05285 0.26 -1.0 327,446 + HMPREF1078_RS05285 0.26 -3.0 327,446 + HMPREF1078_RS05285 0.26 -3.2 327,446 + HMPREF1078_RS05285 0.26 -0.4 327,447 - HMPREF1078_RS05285 0.26 +1.5 327,447 - HMPREF1078_RS05285 0.26 -0.1 327,447 - HMPREF1078_RS05285 0.26 -2.2 327,447 - HMPREF1078_RS05285 0.26 -1.9 327,460 + HMPREF1078_RS05285 0.28 +0.4 327,461 - HMPREF1078_RS05285 0.29 -2.2 327,505 + HMPREF1078_RS05285 0.35 -1.9 327,505 + HMPREF1078_RS05285 0.35 -2.1 327,520 + HMPREF1078_RS05285 0.37 +0.3 327,555 + HMPREF1078_RS05285 0.43 -1.2 327,577 + HMPREF1078_RS05285 0.46 -2.0 327,601 + HMPREF1078_RS05285 0.50 -2.1 327,601 + HMPREF1078_RS05285 0.50 -0.9 327,603 + HMPREF1078_RS05285 0.50 +1.1 327,613 + HMPREF1078_RS05285 0.51 +1.1 327,613 + HMPREF1078_RS05285 0.51 +0.2 327,617 + HMPREF1078_RS05285 0.52 -3.3 327,617 + HMPREF1078_RS05285 0.52 -1.7 327,618 - HMPREF1078_RS05285 0.52 +0.6 327,666 + HMPREF1078_RS05285 0.59 -3.1 327,666 + HMPREF1078_RS05285 0.59 -3.1 327,667 - HMPREF1078_RS05285 0.59 +0.5 327,667 - HMPREF1078_RS05285 0.59 +0.1 327,706 + HMPREF1078_RS05285 0.65 -0.1 327,711 + HMPREF1078_RS05285 0.66 +0.6 327,711 + HMPREF1078_RS05285 0.66 -2.5 327,742 + HMPREF1078_RS05285 0.71 +0.7 327,747 + HMPREF1078_RS05285 0.71 -2.1 327,747 + HMPREF1078_RS05285 0.71 +0.3 327,764 - HMPREF1078_RS05285 0.74 +1.6 327,777 + HMPREF1078_RS05285 0.76 -3.6 327,777 + HMPREF1078_RS05285 0.76 -2.9 327,941 + -2.6 327,941 + -0.2 327,942 - -1.5 327,942 - -2.4 327,942 - +0.3 327,944 - +1.3
Or see this region's nucleotide sequence