Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS05115

Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1078_RS19525 and HMPREF1078_RS05115 are separated by 169 nucleotidesHMPREF1078_RS05115 and HMPREF1078_RS05120 are separated by 4 nucleotides HMPREF1078_RS19525: HMPREF1078_RS19525 - DUF6043 family protein, at 283,901 to 284,842 _RS19525 HMPREF1078_RS05115: HMPREF1078_RS05115 - helix-turn-helix domain-containing protein, at 285,012 to 285,326 _RS05115 HMPREF1078_RS05120: HMPREF1078_RS05120 - DUF5906 domain-containing protein, at 285,331 to 286,521 _RS05120 Position (kb) 285 286Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 284.023 kb on + strand, within HMPREF1078_RS19525at 284.040 kb on + strand, within HMPREF1078_RS19525at 284.059 kb on + strand, within HMPREF1078_RS19525at 284.130 kb on + strand, within HMPREF1078_RS19525at 284.153 kb on - strand, within HMPREF1078_RS19525at 284.154 kb on + strand, within HMPREF1078_RS19525at 284.154 kb on + strand, within HMPREF1078_RS19525at 284.220 kb on - strand, within HMPREF1078_RS19525at 284.231 kb on + strand, within HMPREF1078_RS19525at 284.231 kb on + strand, within HMPREF1078_RS19525at 284.231 kb on + strand, within HMPREF1078_RS19525at 284.278 kb on + strand, within HMPREF1078_RS19525at 284.278 kb on - strand, within HMPREF1078_RS19525at 284.291 kb on + strand, within HMPREF1078_RS19525at 284.292 kb on - strand, within HMPREF1078_RS19525at 284.292 kb on - strand, within HMPREF1078_RS19525at 284.377 kb on - strand, within HMPREF1078_RS19525at 284.467 kb on + strand, within HMPREF1078_RS19525at 284.467 kb on + strand, within HMPREF1078_RS19525at 284.468 kb on - strand, within HMPREF1078_RS19525at 284.468 kb on - strand, within HMPREF1078_RS19525at 284.554 kb on - strand, within HMPREF1078_RS19525at 284.605 kb on + strand, within HMPREF1078_RS19525at 284.606 kb on - strand, within HMPREF1078_RS19525at 284.606 kb on - strand, within HMPREF1078_RS19525at 284.607 kb on + strand, within HMPREF1078_RS19525at 284.828 kb on + strandat 284.832 kb on + strandat 284.832 kb on + strandat 284.832 kb on + strandat 284.832 kb on + strandat 284.832 kb on + strandat 284.832 kb on + strandat 284.833 kb on - strandat 284.833 kb on - strandat 284.901 kb on - strandat 284.917 kb on - strandat 284.918 kb on + strandat 284.920 kb on + strandat 284.964 kb on - strandat 284.966 kb on + strandat 285.011 kb on + strandat 285.012 kb on - strandat 285.022 kb on + strandat 285.022 kb on + strandat 285.022 kb on + strandat 285.023 kb on - strandat 285.023 kb on - strandat 285.067 kb on + strand, within HMPREF1078_RS05115at 285.088 kb on + strand, within HMPREF1078_RS05115at 285.274 kb on - strand, within HMPREF1078_RS05115at 285.324 kb on + strandat 285.324 kb on + strandat 285.325 kb on - strandat 285.330 kb on + strandat 285.331 kb on - strandat 285.346 kb on + strandat 285.346 kb on + strandat 285.347 kb on - strandat 285.370 kb on + strandat 285.425 kb on + strandat 285.487 kb on + strand, within HMPREF1078_RS05120at 285.488 kb on - strand, within HMPREF1078_RS05120at 285.488 kb on - strand, within HMPREF1078_RS05120at 285.488 kb on - strand, within HMPREF1078_RS05120at 285.564 kb on + strand, within HMPREF1078_RS05120at 285.564 kb on + strand, within HMPREF1078_RS05120at 285.564 kb on + strand, within HMPREF1078_RS05120at 285.565 kb on - strand, within HMPREF1078_RS05120at 285.566 kb on + strand, within HMPREF1078_RS05120at 285.566 kb on + strand, within HMPREF1078_RS05120at 285.567 kb on - strand, within HMPREF1078_RS05120at 285.567 kb on - strand, within HMPREF1078_RS05120at 285.574 kb on - strand, within HMPREF1078_RS05120at 285.574 kb on - strand, within HMPREF1078_RS05120at 285.638 kb on - strand, within HMPREF1078_RS05120at 285.655 kb on + strand, within HMPREF1078_RS05120at 285.655 kb on + strand, within HMPREF1078_RS05120at 285.655 kb on + strand, within HMPREF1078_RS05120at 285.656 kb on - strand, within HMPREF1078_RS05120at 285.656 kb on - strand, within HMPREF1078_RS05120at 285.670 kb on + strand, within HMPREF1078_RS05120at 285.696 kb on + strand, within HMPREF1078_RS05120at 285.697 kb on - strand, within HMPREF1078_RS05120at 285.840 kb on - strand, within HMPREF1078_RS05120at 285.840 kb on - strand, within HMPREF1078_RS05120at 285.842 kb on + strand, within HMPREF1078_RS05120at 285.919 kb on + strand, within HMPREF1078_RS05120at 285.980 kb on + strand, within HMPREF1078_RS05120at 285.980 kb on + strand, within HMPREF1078_RS05120at 285.981 kb on - strand, within HMPREF1078_RS05120at 286.008 kb on - strand, within HMPREF1078_RS05120at 286.008 kb on - strand, within HMPREF1078_RS05120at 286.014 kb on - strand, within HMPREF1078_RS05120at 286.104 kb on - strand, within HMPREF1078_RS05120at 286.104 kb on - strand, within HMPREF1078_RS05120at 286.239 kb on - strand, within HMPREF1078_RS05120at 286.292 kb on + strand, within HMPREF1078_RS05120at 286.293 kb on - strand, within HMPREF1078_RS05120at 286.316 kb on + strand, within HMPREF1078_RS05120at 286.325 kb on + strand, within HMPREF1078_RS05120at 286.325 kb on + strand, within HMPREF1078_RS05120at 286.326 kb on - strand, within HMPREF1078_RS05120

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day4
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284,023 + HMPREF1078_RS19525 0.13 +1.1
284,040 + HMPREF1078_RS19525 0.15 +0.7
284,059 + HMPREF1078_RS19525 0.17 +1.0
284,130 + HMPREF1078_RS19525 0.24 +0.2
284,153 - HMPREF1078_RS19525 0.27 -1.2
284,154 + HMPREF1078_RS19525 0.27 -0.6
284,154 + HMPREF1078_RS19525 0.27 -0.3
284,220 - HMPREF1078_RS19525 0.34 -0.5
284,231 + HMPREF1078_RS19525 0.35 -1.7
284,231 + HMPREF1078_RS19525 0.35 +1.7
284,231 + HMPREF1078_RS19525 0.35 +0.0
284,278 + HMPREF1078_RS19525 0.40 -2.6
284,278 - HMPREF1078_RS19525 0.40 -0.4
284,291 + HMPREF1078_RS19525 0.41 -0.8
284,292 - HMPREF1078_RS19525 0.42 +0.1
284,292 - HMPREF1078_RS19525 0.42 -1.3
284,377 - HMPREF1078_RS19525 0.51 +0.2
284,467 + HMPREF1078_RS19525 0.60 -0.9
284,467 + HMPREF1078_RS19525 0.60 -1.7
284,468 - HMPREF1078_RS19525 0.60 -0.1
284,468 - HMPREF1078_RS19525 0.60 +3.7
284,554 - HMPREF1078_RS19525 0.69 +2.3
284,605 + HMPREF1078_RS19525 0.75 -1.7
284,606 - HMPREF1078_RS19525 0.75 -1.6
284,606 - HMPREF1078_RS19525 0.75 +0.7
284,607 + HMPREF1078_RS19525 0.75 +2.0
284,828 + -0.9
284,832 + -0.9
284,832 + +0.6
284,832 + +1.2
284,832 + +1.3
284,832 + +0.3
284,832 + +1.1
284,833 - +0.5
284,833 - +1.1
284,901 - +0.8
284,917 - -0.7
284,918 + -0.0
284,920 + -0.2
284,964 - +0.7
284,966 + -1.8
285,011 + +1.5
285,012 - -3.8
285,022 + +0.6
285,022 + -1.3
285,022 + -0.1
285,023 - -1.1
285,023 - -1.5
285,067 + HMPREF1078_RS05115 0.17 -3.1
285,088 + HMPREF1078_RS05115 0.24 -1.0
285,274 - HMPREF1078_RS05115 0.83 -3.7
285,324 + -1.2
285,324 + -0.2
285,325 - +0.0
285,330 + -0.8
285,331 - -1.2
285,346 + -0.3
285,346 + +1.0
285,347 - +0.2
285,370 + -2.8
285,425 + +0.4
285,487 + HMPREF1078_RS05120 0.13 +1.1
285,488 - HMPREF1078_RS05120 0.13 -1.0
285,488 - HMPREF1078_RS05120 0.13 -1.2
285,488 - HMPREF1078_RS05120 0.13 +0.1
285,564 + HMPREF1078_RS05120 0.20 -1.4
285,564 + HMPREF1078_RS05120 0.20 +0.1
285,564 + HMPREF1078_RS05120 0.20 +2.1
285,565 - HMPREF1078_RS05120 0.20 +1.2
285,566 + HMPREF1078_RS05120 0.20 -0.8
285,566 + HMPREF1078_RS05120 0.20 -0.3
285,567 - HMPREF1078_RS05120 0.20 -1.4
285,567 - HMPREF1078_RS05120 0.20 -0.4
285,574 - HMPREF1078_RS05120 0.20 -2.3
285,574 - HMPREF1078_RS05120 0.20 -1.3
285,638 - HMPREF1078_RS05120 0.26 -0.1
285,655 + HMPREF1078_RS05120 0.27 -1.5
285,655 + HMPREF1078_RS05120 0.27 -0.5
285,655 + HMPREF1078_RS05120 0.27 +0.5
285,656 - HMPREF1078_RS05120 0.27 -0.2
285,656 - HMPREF1078_RS05120 0.27 +0.3
285,670 + HMPREF1078_RS05120 0.28 +0.1
285,696 + HMPREF1078_RS05120 0.31 +1.1
285,697 - HMPREF1078_RS05120 0.31 -0.2
285,840 - HMPREF1078_RS05120 0.43 -0.3
285,840 - HMPREF1078_RS05120 0.43 +0.9
285,842 + HMPREF1078_RS05120 0.43 +0.3
285,919 + HMPREF1078_RS05120 0.49 -1.1
285,980 + HMPREF1078_RS05120 0.54 -1.9
285,980 + HMPREF1078_RS05120 0.54 -2.0
285,981 - HMPREF1078_RS05120 0.55 -3.2
286,008 - HMPREF1078_RS05120 0.57 +0.3
286,008 - HMPREF1078_RS05120 0.57 +0.3
286,014 - HMPREF1078_RS05120 0.57 +0.9
286,104 - HMPREF1078_RS05120 0.65 +1.5
286,104 - HMPREF1078_RS05120 0.65 +0.7
286,239 - HMPREF1078_RS05120 0.76 -2.0
286,292 + HMPREF1078_RS05120 0.81 -1.6
286,293 - HMPREF1078_RS05120 0.81 -1.0
286,316 + HMPREF1078_RS05120 0.83 -1.4
286,325 + HMPREF1078_RS05120 0.83 -1.7
286,325 + HMPREF1078_RS05120 0.83 +0.1
286,326 - HMPREF1078_RS05120 0.84 -0.0

Or see this region's nucleotide sequence