Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS05085

Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1078_RS05075 and HMPREF1078_RS05080 overlap by 35 nucleotidesHMPREF1078_RS05080 and HMPREF1078_RS05085 are separated by 146 nucleotidesHMPREF1078_RS05085 and HMPREF1078_RS05090 are separated by 163 nucleotides HMPREF1078_RS05075: HMPREF1078_RS05075 - relaxase/mobilization nuclease domain-containing protein, at 277,157 to 278,077 _RS05075 HMPREF1078_RS05080: HMPREF1078_RS05080 - MobC family plasmid mobilization relaxosome protein, at 278,043 to 278,426 _RS05080 HMPREF1078_RS05085: HMPREF1078_RS05085 - toprim domain-containing protein, at 278,573 to 279,538 _RS05085 HMPREF1078_RS05090: HMPREF1078_RS05090 - AAA family ATPase, at 279,702 to 280,775 _RS05090 Position (kb) 278 279 280Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 277.578 kb on + strand, within HMPREF1078_RS05075at 277.579 kb on - strand, within HMPREF1078_RS05075at 277.673 kb on + strand, within HMPREF1078_RS05075at 277.689 kb on + strand, within HMPREF1078_RS05075at 277.690 kb on - strand, within HMPREF1078_RS05075at 277.690 kb on - strand, within HMPREF1078_RS05075at 277.694 kb on - strand, within HMPREF1078_RS05075at 277.694 kb on - strand, within HMPREF1078_RS05075at 277.694 kb on - strand, within HMPREF1078_RS05075at 277.695 kb on - strand, within HMPREF1078_RS05075at 277.822 kb on + strand, within HMPREF1078_RS05075at 277.822 kb on + strand, within HMPREF1078_RS05075at 277.823 kb on - strand, within HMPREF1078_RS05075at 277.823 kb on - strand, within HMPREF1078_RS05075at 277.825 kb on - strand, within HMPREF1078_RS05075at 277.841 kb on + strand, within HMPREF1078_RS05075at 277.898 kb on - strand, within HMPREF1078_RS05075at 277.898 kb on - strand, within HMPREF1078_RS05075at 277.943 kb on - strand, within HMPREF1078_RS05075at 277.958 kb on + strand, within HMPREF1078_RS05075at 278.017 kb on + strandat 278.018 kb on - strandat 278.028 kb on + strandat 278.028 kb on + strandat 278.029 kb on - strandat 278.091 kb on + strand, within HMPREF1078_RS05080at 278.214 kb on - strand, within HMPREF1078_RS05080at 278.279 kb on - strand, within HMPREF1078_RS05080at 278.327 kb on - strand, within HMPREF1078_RS05080at 278.329 kb on + strand, within HMPREF1078_RS05080at 278.448 kb on - strandat 278.514 kb on + strandat 278.585 kb on - strandat 278.745 kb on + strand, within HMPREF1078_RS05085at 278.755 kb on - strand, within HMPREF1078_RS05085at 278.800 kb on + strand, within HMPREF1078_RS05085at 278.818 kb on - strand, within HMPREF1078_RS05085at 278.825 kb on + strand, within HMPREF1078_RS05085at 278.826 kb on - strand, within HMPREF1078_RS05085at 278.826 kb on - strand, within HMPREF1078_RS05085at 278.874 kb on + strand, within HMPREF1078_RS05085at 278.874 kb on + strand, within HMPREF1078_RS05085at 278.875 kb on - strand, within HMPREF1078_RS05085at 278.927 kb on - strand, within HMPREF1078_RS05085at 279.023 kb on - strand, within HMPREF1078_RS05085at 279.124 kb on + strand, within HMPREF1078_RS05085at 279.124 kb on + strand, within HMPREF1078_RS05085at 279.124 kb on + strand, within HMPREF1078_RS05085at 279.125 kb on - strand, within HMPREF1078_RS05085at 279.125 kb on - strand, within HMPREF1078_RS05085at 279.125 kb on - strand, within HMPREF1078_RS05085at 279.171 kb on + strand, within HMPREF1078_RS05085at 279.195 kb on - strand, within HMPREF1078_RS05085at 279.288 kb on - strand, within HMPREF1078_RS05085at 279.296 kb on + strand, within HMPREF1078_RS05085at 279.296 kb on + strand, within HMPREF1078_RS05085at 279.443 kb on - strandat 279.449 kb on + strandat 279.485 kb on + strandat 279.485 kb on + strandat 279.491 kb on - strandat 279.604 kb on + strandat 279.604 kb on + strandat 279.604 kb on + strandat 279.604 kb on + strandat 279.605 kb on - strandat 279.605 kb on - strandat 279.607 kb on - strandat 279.607 kb on - strandat 279.619 kb on + strandat 279.670 kb on - strandat 279.670 kb on - strandat 279.671 kb on + strandat 279.671 kb on + strandat 279.672 kb on - strandat 279.672 kb on - strandat 279.673 kb on + strandat 279.673 kb on + strandat 279.673 kb on + strandat 279.674 kb on - strandat 279.674 kb on - strandat 279.675 kb on + strandat 279.676 kb on - strandat 279.724 kb on + strandat 279.780 kb on - strandat 279.812 kb on - strand, within HMPREF1078_RS05090at 279.868 kb on - strand, within HMPREF1078_RS05090at 279.966 kb on + strand, within HMPREF1078_RS05090at 279.967 kb on - strand, within HMPREF1078_RS05090at 279.971 kb on - strand, within HMPREF1078_RS05090at 280.041 kb on + strand, within HMPREF1078_RS05090at 280.041 kb on + strand, within HMPREF1078_RS05090at 280.042 kb on - strand, within HMPREF1078_RS05090at 280.042 kb on - strand, within HMPREF1078_RS05090at 280.042 kb on - strand, within HMPREF1078_RS05090at 280.043 kb on + strand, within HMPREF1078_RS05090at 280.044 kb on - strand, within HMPREF1078_RS05090at 280.044 kb on - strand, within HMPREF1078_RS05090at 280.056 kb on + strand, within HMPREF1078_RS05090at 280.057 kb on - strand, within HMPREF1078_RS05090at 280.151 kb on + strand, within HMPREF1078_RS05090at 280.152 kb on - strand, within HMPREF1078_RS05090at 280.177 kb on - strand, within HMPREF1078_RS05090at 280.188 kb on - strand, within HMPREF1078_RS05090at 280.197 kb on - strand, within HMPREF1078_RS05090at 280.197 kb on - strand, within HMPREF1078_RS05090at 280.199 kb on - strand, within HMPREF1078_RS05090at 280.199 kb on - strand, within HMPREF1078_RS05090at 280.230 kb on + strand, within HMPREF1078_RS05090at 280.230 kb on + strand, within HMPREF1078_RS05090at 280.313 kb on + strand, within HMPREF1078_RS05090at 280.314 kb on - strand, within HMPREF1078_RS05090at 280.314 kb on - strand, within HMPREF1078_RS05090at 280.325 kb on + strand, within HMPREF1078_RS05090at 280.325 kb on + strand, within HMPREF1078_RS05090at 280.325 kb on + strand, within HMPREF1078_RS05090at 280.325 kb on + strand, within HMPREF1078_RS05090at 280.326 kb on - strand, within HMPREF1078_RS05090at 280.326 kb on - strand, within HMPREF1078_RS05090at 280.326 kb on - strand, within HMPREF1078_RS05090at 280.326 kb on - strand, within HMPREF1078_RS05090at 280.326 kb on - strand, within HMPREF1078_RS05090at 280.328 kb on - strand, within HMPREF1078_RS05090at 280.330 kb on + strand, within HMPREF1078_RS05090at 280.335 kb on + strand, within HMPREF1078_RS05090at 280.335 kb on + strand, within HMPREF1078_RS05090at 280.336 kb on - strand, within HMPREF1078_RS05090at 280.336 kb on - strand, within HMPREF1078_RS05090at 280.336 kb on - strand, within HMPREF1078_RS05090at 280.431 kb on - strand, within HMPREF1078_RS05090at 280.446 kb on - strand, within HMPREF1078_RS05090at 280.456 kb on + strand, within HMPREF1078_RS05090at 280.472 kb on + strand, within HMPREF1078_RS05090

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day4
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277,578 + HMPREF1078_RS05075 0.46 -0.3
277,579 - HMPREF1078_RS05075 0.46 -0.1
277,673 + HMPREF1078_RS05075 0.56 -0.2
277,689 + HMPREF1078_RS05075 0.58 -0.4
277,690 - HMPREF1078_RS05075 0.58 +0.4
277,690 - HMPREF1078_RS05075 0.58 +1.1
277,694 - HMPREF1078_RS05075 0.58 -2.8
277,694 - HMPREF1078_RS05075 0.58 -1.2
277,694 - HMPREF1078_RS05075 0.58 -1.4
277,695 - HMPREF1078_RS05075 0.58 -1.7
277,822 + HMPREF1078_RS05075 0.72 +0.1
277,822 + HMPREF1078_RS05075 0.72 -0.4
277,823 - HMPREF1078_RS05075 0.72 -1.7
277,823 - HMPREF1078_RS05075 0.72 -0.1
277,825 - HMPREF1078_RS05075 0.73 -0.4
277,841 + HMPREF1078_RS05075 0.74 -1.4
277,898 - HMPREF1078_RS05075 0.80 -3.8
277,898 - HMPREF1078_RS05075 0.80 -3.1
277,943 - HMPREF1078_RS05075 0.85 +1.0
277,958 + HMPREF1078_RS05075 0.87 +1.6
278,017 + -0.1
278,018 - -4.0
278,028 + +0.9
278,028 + +1.1
278,029 - -3.8
278,091 + HMPREF1078_RS05080 0.12 +1.5
278,214 - HMPREF1078_RS05080 0.45 -1.1
278,279 - HMPREF1078_RS05080 0.61 +1.4
278,327 - HMPREF1078_RS05080 0.74 -0.4
278,329 + HMPREF1078_RS05080 0.74 +0.7
278,448 - -2.9
278,514 + -0.4
278,585 - +0.1
278,745 + HMPREF1078_RS05085 0.18 -1.2
278,755 - HMPREF1078_RS05085 0.19 -1.5
278,800 + HMPREF1078_RS05085 0.23 +0.3
278,818 - HMPREF1078_RS05085 0.25 -1.5
278,825 + HMPREF1078_RS05085 0.26 -1.0
278,826 - HMPREF1078_RS05085 0.26 +0.7
278,826 - HMPREF1078_RS05085 0.26 -2.2
278,874 + HMPREF1078_RS05085 0.31 +0.4
278,874 + HMPREF1078_RS05085 0.31 +0.6
278,875 - HMPREF1078_RS05085 0.31 -1.7
278,927 - HMPREF1078_RS05085 0.37 +1.1
279,023 - HMPREF1078_RS05085 0.47 +0.5
279,124 + HMPREF1078_RS05085 0.57 +2.5
279,124 + HMPREF1078_RS05085 0.57 +0.3
279,124 + HMPREF1078_RS05085 0.57 -1.8
279,125 - HMPREF1078_RS05085 0.57 +2.1
279,125 - HMPREF1078_RS05085 0.57 -0.2
279,125 - HMPREF1078_RS05085 0.57 -0.1
279,171 + HMPREF1078_RS05085 0.62 -2.1
279,195 - HMPREF1078_RS05085 0.64 -0.1
279,288 - HMPREF1078_RS05085 0.74 -0.9
279,296 + HMPREF1078_RS05085 0.75 -1.2
279,296 + HMPREF1078_RS05085 0.75 +0.3
279,443 - -1.6
279,449 + -2.9
279,485 + -0.1
279,485 + -0.7
279,491 - +0.1
279,604 + +0.9
279,604 + -0.6
279,604 + +0.1
279,604 + -0.5
279,605 - +0.1
279,605 - -0.9
279,607 - -1.0
279,607 - -2.3
279,619 + -2.7
279,670 - -1.8
279,670 - -2.7
279,671 + -0.7
279,671 + -0.5
279,672 - +0.8
279,672 - +0.4
279,673 + -0.7
279,673 + +0.9
279,673 + -0.6
279,674 - -2.6
279,674 - -0.8
279,675 + -0.0
279,676 - +1.1
279,724 + -1.6
279,780 - -3.4
279,812 - HMPREF1078_RS05090 0.10 +0.4
279,868 - HMPREF1078_RS05090 0.15 +0.1
279,966 + HMPREF1078_RS05090 0.25 -0.8
279,967 - HMPREF1078_RS05090 0.25 -0.2
279,971 - HMPREF1078_RS05090 0.25 +1.1
280,041 + HMPREF1078_RS05090 0.32 +0.1
280,041 + HMPREF1078_RS05090 0.32 +0.5
280,042 - HMPREF1078_RS05090 0.32 -1.0
280,042 - HMPREF1078_RS05090 0.32 +0.1
280,042 - HMPREF1078_RS05090 0.32 -1.2
280,043 + HMPREF1078_RS05090 0.32 +0.1
280,044 - HMPREF1078_RS05090 0.32 -1.6
280,044 - HMPREF1078_RS05090 0.32 -2.7
280,056 + HMPREF1078_RS05090 0.33 -0.0
280,057 - HMPREF1078_RS05090 0.33 -3.3
280,151 + HMPREF1078_RS05090 0.42 +1.6
280,152 - HMPREF1078_RS05090 0.42 +0.1
280,177 - HMPREF1078_RS05090 0.44 +1.1
280,188 - HMPREF1078_RS05090 0.45 -2.0
280,197 - HMPREF1078_RS05090 0.46 -0.0
280,197 - HMPREF1078_RS05090 0.46 -1.5
280,199 - HMPREF1078_RS05090 0.46 -0.9
280,199 - HMPREF1078_RS05090 0.46 -1.7
280,230 + HMPREF1078_RS05090 0.49 +1.5
280,230 + HMPREF1078_RS05090 0.49 +1.5
280,313 + HMPREF1078_RS05090 0.57 +0.9
280,314 - HMPREF1078_RS05090 0.57 -0.5
280,314 - HMPREF1078_RS05090 0.57 +0.1
280,325 + HMPREF1078_RS05090 0.58 +0.5
280,325 + HMPREF1078_RS05090 0.58 -0.5
280,325 + HMPREF1078_RS05090 0.58 +0.8
280,325 + HMPREF1078_RS05090 0.58 +1.9
280,326 - HMPREF1078_RS05090 0.58 +0.6
280,326 - HMPREF1078_RS05090 0.58 -0.3
280,326 - HMPREF1078_RS05090 0.58 +1.0
280,326 - HMPREF1078_RS05090 0.58 -0.3
280,326 - HMPREF1078_RS05090 0.58 +1.2
280,328 - HMPREF1078_RS05090 0.58 -1.7
280,330 + HMPREF1078_RS05090 0.58 +0.2
280,335 + HMPREF1078_RS05090 0.59 +2.5
280,335 + HMPREF1078_RS05090 0.59 +0.4
280,336 - HMPREF1078_RS05090 0.59 -3.5
280,336 - HMPREF1078_RS05090 0.59 +0.8
280,336 - HMPREF1078_RS05090 0.59 +0.7
280,431 - HMPREF1078_RS05090 0.68 -1.1
280,446 - HMPREF1078_RS05090 0.69 -1.7
280,456 + HMPREF1078_RS05090 0.70 +2.0
280,472 + HMPREF1078_RS05090 0.72 -2.3

Or see this region's nucleotide sequence