Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS04840

Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day4
216,238	+		HMPREF1078_RS04835	0.29	+1.1
216,311	-		HMPREF1078_RS04835	0.35	+0.5
216,352	+		HMPREF1078_RS04835	0.38	-0.2
216,444	-		HMPREF1078_RS04835	0.45	-0.4
216,444	-		HMPREF1078_RS04835	0.45	+1.1
216,445	+		HMPREF1078_RS04835	0.45	-0.1
216,445	+		HMPREF1078_RS04835	0.45	+0.3
216,446	-		HMPREF1078_RS04835	0.45	+1.6
216,536	+		HMPREF1078_RS04835	0.52	-1.2
216,693	+		HMPREF1078_RS04835	0.64	-2.1
216,756	-		HMPREF1078_RS04835	0.69	+0.7
216,800	-		HMPREF1078_RS04835	0.73	-0.5
216,904	+		HMPREF1078_RS04835	0.81	+2.1
216,905	-		HMPREF1078_RS04835	0.81	-2.6
216,905	-		HMPREF1078_RS04835	0.81	-2.4
216,913	+		HMPREF1078_RS04835	0.82	+0.4
216,913	+		HMPREF1078_RS04835	0.82	+0.9
216,914	-		HMPREF1078_RS04835	0.82	+0.3
216,914	-		HMPREF1078_RS04835	0.82	-1.6
216,917	+		HMPREF1078_RS04835	0.82	-0.4
216,917	+		HMPREF1078_RS04835	0.82	-1.7
216,917	+		HMPREF1078_RS04835	0.82	-1.2
216,917	+		HMPREF1078_RS04835	0.82	+1.0
216,918	-		HMPREF1078_RS04835	0.82	-1.3
216,922	-		HMPREF1078_RS04835	0.82	+0.1
216,925	+		HMPREF1078_RS04835	0.83	+0.1
217,031	-				+1.1
217,032	+				+1.1
217,032	+				+1.3
217,033	-				-1.1
217,033	-				-2.5
217,033	-				-0.6
217,056	+				+0.1
217,125	-				-1.0
217,189	+				-0.4
217,213	-				-0.4
217,214	+				-0.4
217,214	+				-2.0
217,214	+				-2.7
217,215	-				-2.2
217,215	-				-1.4
217,215	-				-0.4
217,215	-				-0.9
217,215	-				+0.1
217,216	+				-1.9
217,216	+				+1.1
217,216	+				-1.4
217,216	+				-1.9
217,216	+				-1.7
217,217	-				+1.1
217,217	-				+0.1
217,232	+				-1.7
217,382	+				-2.2
217,382	+				+1.1
217,383	-				-2.3
217,383	-				-0.4
217,472	+				-2.3
217,494	-		HMPREF1078_RS04840	0.11	-3.4
217,494	-		HMPREF1078_RS04840	0.11	-2.2
217,494	-		HMPREF1078_RS04840	0.11	-1.3
217,527	-		HMPREF1078_RS04840	0.12	-3.2
217,527	-		HMPREF1078_RS04840	0.12	-1.4
217,527	-		HMPREF1078_RS04840	0.12	-1.2
217,527	-		HMPREF1078_RS04840	0.12	-1.4
217,590	+		HMPREF1078_RS04840	0.13	-2.0
217,590	+		HMPREF1078_RS04840	0.13	-0.9
217,600	+		HMPREF1078_RS04840	0.14	-2.3
217,604	-		HMPREF1078_RS04840	0.14	-0.4
217,619	-		HMPREF1078_RS04840	0.14	-2.2
217,655	+		HMPREF1078_RS04840	0.15	-0.9
217,656	-		HMPREF1078_RS04840	0.15	-3.7
217,656	-		HMPREF1078_RS04840	0.15	-3.3
217,656	-		HMPREF1078_RS04840	0.15	-1.9
217,697	+		HMPREF1078_RS04840	0.17	-0.1
217,698	-		HMPREF1078_RS04840	0.17	-1.0
217,771	+		HMPREF1078_RS04840	0.19	-2.4
217,771	+		HMPREF1078_RS04840	0.19	-1.7
217,771	+		HMPREF1078_RS04840	0.19	-2.3
217,772	-		HMPREF1078_RS04840	0.19	-0.4
217,772	-		HMPREF1078_RS04840	0.19	-0.2
217,774	-		HMPREF1078_RS04840	0.19	+0.1
217,799	+		HMPREF1078_RS04840	0.20	-1.9
217,877	+		HMPREF1078_RS04840	0.22	-2.2
217,889	-		HMPREF1078_RS04840	0.22	-1.9
218,002	+		HMPREF1078_RS04840	0.26	-2.6
218,034	+		HMPREF1078_RS04840	0.27	-1.4
218,094	+		HMPREF1078_RS04840	0.28	-2.3
218,095	-		HMPREF1078_RS04840	0.28	-1.2
218,096	+		HMPREF1078_RS04840	0.28	-2.0
218,096	+		HMPREF1078_RS04840	0.28	-1.4
218,097	-		HMPREF1078_RS04840	0.29	-2.0
218,113	-		HMPREF1078_RS04840	0.29	-3.5
218,113	-		HMPREF1078_RS04840	0.29	-1.9
218,178	+		HMPREF1078_RS04840	0.31	-1.2
218,179	-		HMPREF1078_RS04840	0.31	-3.3
218,250	+		HMPREF1078_RS04840	0.33	-2.3
218,251	-		HMPREF1078_RS04840	0.33	-0.4
218,251	-		HMPREF1078_RS04840	0.33	-0.9
218,352	-		HMPREF1078_RS04840	0.36	-2.9
218,399	+		HMPREF1078_RS04840	0.37	-2.0
218,400	-		HMPREF1078_RS04840	0.38	-1.7
218,400	-		HMPREF1078_RS04840	0.38	-3.8
218,456	+		HMPREF1078_RS04840	0.39	-2.3
218,486	+		HMPREF1078_RS04840	0.40	-2.9
218,486	+		HMPREF1078_RS04840	0.40	-0.9
218,487	-		HMPREF1078_RS04840	0.40	+0.1
218,487	-		HMPREF1078_RS04840	0.40	-3.0
218,487	-		HMPREF1078_RS04840	0.40	-3.0
218,487	-		HMPREF1078_RS04840	0.40	-2.8
218,507	+		HMPREF1078_RS04840	0.41	-3.4
218,508	-		HMPREF1078_RS04840	0.41	-2.3
218,519	+		HMPREF1078_RS04840	0.41	-1.4
218,546	+		HMPREF1078_RS04840	0.42	-1.2
218,547	-		HMPREF1078_RS04840	0.42	-1.9
218,548	+		HMPREF1078_RS04840	0.42	-1.9
218,548	+		HMPREF1078_RS04840	0.42	-2.0
218,549	-		HMPREF1078_RS04840	0.42	-2.0
218,564	+		HMPREF1078_RS04840	0.42	-3.4
218,565	-		HMPREF1078_RS04840	0.42	-1.7
218,623	+		HMPREF1078_RS04840	0.44	-1.7
218,627	+		HMPREF1078_RS04840	0.44	-2.3
218,628	-		HMPREF1078_RS04840	0.44	-2.4
218,635	-		HMPREF1078_RS04840	0.45	-1.4
218,635	-		HMPREF1078_RS04840	0.45	+0.1
218,673	+		HMPREF1078_RS04840	0.46	-0.7
218,673	+		HMPREF1078_RS04840	0.46	-2.6
218,674	-		HMPREF1078_RS04840	0.46	-2.7
218,719	+		HMPREF1078_RS04840	0.47	-2.4
218,719	+		HMPREF1078_RS04840	0.47	-3.0
218,719	+		HMPREF1078_RS04840	0.47	-1.9
218,729	+		HMPREF1078_RS04840	0.47	-3.7
218,730	-		HMPREF1078_RS04840	0.47	-3.5
218,764	+		HMPREF1078_RS04840	0.48	-2.2
218,792	+		HMPREF1078_RS04840	0.49	-1.4
218,793	-		HMPREF1078_RS04840	0.49	-2.4
218,804	+		HMPREF1078_RS04840	0.50	+0.1
218,837	+		HMPREF1078_RS04840	0.51	-1.2
218,837	+		HMPREF1078_RS04840	0.51	+1.1
218,885	-		HMPREF1078_RS04840	0.52	-2.3
218,885	-		HMPREF1078_RS04840	0.52	-2.3
218,885	-		HMPREF1078_RS04840	0.52	-4.0
218,892	+		HMPREF1078_RS04840	0.52	-1.2
218,893	-		HMPREF1078_RS04840	0.52	-2.4
218,934	-		HMPREF1078_RS04840	0.53	-2.9
218,958	+		HMPREF1078_RS04840	0.54	-1.6
218,959	-		HMPREF1078_RS04840	0.54	-3.0
218,959	-		HMPREF1078_RS04840	0.54	-2.2
218,959	-		HMPREF1078_RS04840	0.54	-1.0
218,959	-		HMPREF1078_RS04840	0.54	-2.8
219,013	+		HMPREF1078_RS04840	0.56	-1.4
219,014	-		HMPREF1078_RS04840	0.56	-3.7
219,028	+		HMPREF1078_RS04840	0.56	+0.1
219,029	-		HMPREF1078_RS04840	0.56	-2.2
219,029	-		HMPREF1078_RS04840	0.56	-1.3
219,030	-		HMPREF1078_RS04840	0.56	-1.7
219,039	-		HMPREF1078_RS04840	0.57	-2.8
219,039	-		HMPREF1078_RS04840	0.57	-2.4
219,042	+		HMPREF1078_RS04840	0.57	-1.9
219,043	-		HMPREF1078_RS04840	0.57	-1.7
219,074	+		HMPREF1078_RS04840	0.58	-2.4
219,075	-		HMPREF1078_RS04840	0.58	-2.2
219,075	-		HMPREF1078_RS04840	0.58	-2.0
219,114	-		HMPREF1078_RS04840	0.59	-4.0
219,147	+		HMPREF1078_RS04840	0.60	-2.2
219,187	+		HMPREF1078_RS04840	0.61	-1.0
219,231	-		HMPREF1078_RS04840	0.62	-4.8
219,332	+		HMPREF1078_RS04840	0.65	-2.4
219,350	+		HMPREF1078_RS04840	0.66	-2.0
219,351	-		HMPREF1078_RS04840	0.66	-2.7
219,360	-		HMPREF1078_RS04840	0.66	-1.4
219,360	-		HMPREF1078_RS04840	0.66	-1.9
219,423	+		HMPREF1078_RS04840	0.68	-2.3
219,424	-		HMPREF1078_RS04840	0.68	-3.2
219,528	+		HMPREF1078_RS04840	0.71	-2.7
219,529	-		HMPREF1078_RS04840	0.71	-1.7
219,558	-		HMPREF1078_RS04840	0.72	-3.3
219,626	+		HMPREF1078_RS04840	0.74	-1.2
219,627	-		HMPREF1078_RS04840	0.74	-3.0
219,627	-		HMPREF1078_RS04840	0.74	-0.4
219,628	+		HMPREF1078_RS04840	0.74	-2.9
219,637	+		HMPREF1078_RS04840	0.74	-1.4
219,639	+		HMPREF1078_RS04840	0.74	-0.4
219,639	+		HMPREF1078_RS04840	0.74	-1.2
219,640	-		HMPREF1078_RS04840	0.74	-1.3
219,640	-		HMPREF1078_RS04840	0.74	+0.1
219,692	+		HMPREF1078_RS04840	0.76	-1.7
219,692	+		HMPREF1078_RS04840	0.76	-1.2
219,693	-		HMPREF1078_RS04840	0.76	-0.4
219,693	-		HMPREF1078_RS04840	0.76	-1.8
219,693	-		HMPREF1078_RS04840	0.76	-3.7
219,693	-		HMPREF1078_RS04840	0.76	-1.7
219,693	-		HMPREF1078_RS04840	0.76	-1.9
219,704	+		HMPREF1078_RS04840	0.76	-2.4
219,704	+		HMPREF1078_RS04840	0.76	-1.7
219,705	-		HMPREF1078_RS04840	0.76	-2.4
219,710	-		HMPREF1078_RS04840	0.76	-0.9
219,726	+		HMPREF1078_RS04840	0.77	-2.4
219,727	-		HMPREF1078_RS04840	0.77	-3.0
219,739	-		HMPREF1078_RS04840	0.77	-0.4
219,740	+		HMPREF1078_RS04840	0.77	-1.4
219,740	+		HMPREF1078_RS04840	0.77	-2.7
219,787	+		HMPREF1078_RS04840	0.79	+0.1
219,823	-		HMPREF1078_RS04840	0.80	-0.9
219,845	+		HMPREF1078_RS04840	0.80	-3.0
219,846	-		HMPREF1078_RS04840	0.80	-1.4
219,872	+		HMPREF1078_RS04840	0.81	-2.2
219,950	+		HMPREF1078_RS04840	0.84	-0.4
219,951	-		HMPREF1078_RS04840	0.84	-2.9
219,951	-		HMPREF1078_RS04840	0.84	-3.4
219,964	+		HMPREF1078_RS04840	0.84	-0.9
220,019	-		HMPREF1078_RS04840	0.86	-1.4
220,080	-		HMPREF1078_RS04840	0.87	-1.4
220,111	+		HMPREF1078_RS04840	0.88	+0.1
220,112	-		HMPREF1078_RS04840	0.88	-3.3
220,157	+		HMPREF1078_RS04840	0.90	-3.0
220,157	+		HMPREF1078_RS04840	0.90	-3.0
220,172	-				-4.3
220,228	+				-3.0
220,233	+				-3.3
220,255	+				-2.0
220,255	+				-0.9
220,255	+				-1.2
220,255	+				-1.3
220,256	-				-2.6
220,259	+				-2.9
220,259	+				-1.2
220,300	+				-3.6
220,300	+				-1.2
220,301	-				-3.4
220,301	-				-2.0
220,301	-				-1.9
220,363	+				-2.7
220,368	-				-1.7
220,368	-				-2.9
220,429	+				-3.1
220,429	+				-2.4
220,437	-				-3.6
220,488	+				-3.2
220,488	+				-3.3
220,488	+				-1.2
220,489	-				-2.6
220,489	-				-2.9
220,518	+				-0.4
220,518	+				-2.0
220,555	+				-0.9
220,555	+				+0.1
220,555	+				-3.0
220,558	-				+1.1
220,558	-				-2.2
220,629	-		HMPREF1078_RS04845	0.18	-2.5
220,629	-		HMPREF1078_RS04845	0.18	+0.9
220,656	+		HMPREF1078_RS04845	0.23	-0.9
220,656	+		HMPREF1078_RS04845	0.23	-1.4
220,687	+		HMPREF1078_RS04845	0.28	-3.1
220,688	-		HMPREF1078_RS04845	0.28	+0.0
220,697	-		HMPREF1078_RS04845	0.29	-2.5
220,723	+		HMPREF1078_RS04845	0.33	+1.7
220,946	+		HMPREF1078_RS04845	0.70	-1.2
221,045	-		HMPREF1078_RS04845	0.86	-0.2
221,054	-		HMPREF1078_RS04845	0.87	-2.1
221,104	-				+0.4
221,115	-				+1.4
221,132	-				-1.9
221,133	+				+0.5
221,133	+				-1.7
221,134	-				+0.7
221,184	+				-1.4
221,184	+				+0.7
221,184	+				+1.1
221,184	+				-1.4
221,185	-				-1.6
221,185	-				-1.2
221,185	-				-1.2
221,185	-				-0.3
221,189	-				-2.1
221,189	-				+0.1
221,189	-				+0.8
221,189	-				+2.8
221,189	-				+0.4
221,195	-				-0.5
221,195	-				-2.8
221,195	-				+0.9
221,195	-				+1.4
221,338	-		HMPREF1078_RS04850	0.31	-1.7